CaUC04G070980 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G070980
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDAO domain-containing protein
LocationCiama_Chr04: 18504161 .. 18506201 (+)
RNA-Seq ExpressionCaUC04G070980
SyntenyCaUC04G070980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTTAATAACGAAGTGGTTAAATCTGACATGTTCATAAAATAGAAACTTGAAACGAAACTTTTCTTTTATTCTGTTCCTTCTCTTTTCCTTTTTCTCTTATCTCCAAATTTATTGTGTTATTCGATTTTCCACCTAATTGTCCAACAGATGTAAACATTCCAAGAGTTTCGCTAAAATTCCACAGGAAATCTCGTCACAACACCATCAGTTTGTTGAAAGAACAAATCCTTTGACATTATCCAGAATTTAAATTTGTAGTAAAGAACAAATTTCTAACAAATTTCAAAGTAAACAGGGGAGTAAGTCTCTTTGTATACCTGTGTTTCATTGTGGACAGAGGCAAGTGCCAGATTTCAATGAACTACTTCAGACTACATTTTGAACATTGCAATGTTATCTTGTTTTCTAGAAAATCTCACTTGGTGTTAATGTCATTCGGTGTGAAGTATGGAATCACTATGATATTATGCAGGGAGAGGATATTCATAAGGTTTCTGGTCTCGTCAACCTTTTTGGAATCGAATCACCTGGGCTGACTTCAAGCCTGGCAATTGCAGAGCATATAGCTGCAAGATATATGTAAAGGTAAGACTCCATTTGATATGATTTTCTTTTAGCTTTCAGTTTTTTAAAATTAAAACGACTTGATTAGCTATTTCTTTGTTTGGAACATTTTTTTTTAAAACAAAAAGTTTTAATCTTGAATAAGTTGTATTGGTAACCCTGAGATGAGTTGTGCTTCTATTTTCTATGAAGAAAAAATCAAGTTAAGCTTTTCAATGTAACGAAATAGGGACCTATCTATGAAAAGACAAACCAAATTGTAATAGAAAACAAAATAATTGCTTGAGAAGTCAAATTATATTTTACAATATGCGTTTTCACACCAGGAATTGAAACCAAGAAATTAGAAGAAAAAAGGGTTCCCTTTGATAGTGTTTACCAAAAGGTCCAAAACCAAGAATGAGAAGCAAACGTGAGACTCACTCGTAATTTGGCAATTTCTTTCTCTCAAAGGTCGTTTGGAGCGAGAATGCTATTCATTTGATGCTGTTGACTGAGAGTTGTCTGGAATTAGAATCAGAAATCCATTGATGTTGTTTACGTTCATCTAGAGTCGGAGTGAAATATAAATGATTACTAAAATGTTATTTTAAAATAAAACAAATAATTACTACAAAAATTTTGTGTTCTACTGCGCAATTACCTTACTGCTCTTAGTTATTAAACAAAAAACTTCCCTCCCTTGATTCATTTCCTTTCTCTTTCCTTATTTCCTTTCTGTATTCTCTGTGTTTTTTACTAATAAGTGTTGTATTTTGTCTTTGTGATTCACCTCAGAATACTTGCTTTAGCGTTTCACATGGTCGAACTTCACCCAGGTAATGTATCGCTCCTCTTTCCCTTCCATTTTCGTTTCTATTATTTTTTGAAATTGTTTTGGTTCAATCTATTTGATGTTCTGCAAATCCCTTGATATCAATGGATTTTGAGGTTTGTTTGAGGGTTGAATGTTGTTTTTGAGGGCGTAGGTATGTTGTATGTTGTTTGTGTCATGTCATCTGGTTAATCACGAGTTAGGGTTAGGGTTTAGTTGTTTGATTGCTGGTATTGCATGTACCTAAACCTTCATGGAATGATTGAGATTGACAGGCTAAGCTTAGAAGGGAGAATTTGCGAGAGGTAGAATACAATTGAAAAAAAAAAAAAAAGAATTTAAGGAGATGTTTGGAGTGAGAAGATGAGATGAGATGAGTTAGATATGAACTCAACTCATTGTTTGGGAGGCCAACATCGTATGTCACCTACATTTTATACCATGCCCACCGACAGTGTACTCAACCTTCATCACAAGCGATCACCTCTGAAGACCAATTTCAGGGACCACCTTCGACATCCAACTTCGACGACCACCTCGGACGGCCAACTACGACGACCACCTCCAAGGGCCAACTTCGGCGACTACCTCCGATAGCCTACTCCGGCAACATCCAACCACCACTATTGATGGGTAACTCCGACGACCACCCCTAA

mRNA sequence

ATGATGGGAGAGGATATTCATAAGGTTTCTGGTCTCGTCAACCTTTTTGGAATCGAATCACCTGGGCTGACTTCAAGCCTGGCAATTGCAGAGCATATAGCTGCAAGATATATATATGAACTCAACTCATTGTTTGGGAGGCCAACATCGTATGTCACCTACATTTTATACCATGCCCACCGACAGTGTACTCAACCTTCATCACAAGCGATCACCTCTGAAGACCAATTTCAGGGACCACCTTCGACATCCAACTTCGACGACCACCTCGGACGGCCAACTACGACGACCACCTCCAAGGGCCAACTTCGGCGACTACCTCCGATAGCCTACTCCGGCAACATCCAACCACCACTATTGATGGGTAACTCCGACGACCACCCCTAA

Coding sequence (CDS)

ATGATGGGAGAGGATATTCATAAGGTTTCTGGTCTCGTCAACCTTTTTGGAATCGAATCACCTGGGCTGACTTCAAGCCTGGCAATTGCAGAGCATATAGCTGCAAGATATATATATGAACTCAACTCATTGTTTGGGAGGCCAACATCGTATGTCACCTACATTTTATACCATGCCCACCGACAGTGTACTCAACCTTCATCACAAGCGATCACCTCTGAAGACCAATTTCAGGGACCACCTTCGACATCCAACTTCGACGACCACCTCGGACGGCCAACTACGACGACCACCTCCAAGGGCCAACTTCGGCGACTACCTCCGATAGCCTACTCCGGCAACATCCAACCACCACTATTGATGGGTAACTCCGACGACCACCCCTAA

Protein sequence

MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYIYELNSLFGRPTSYVTYILYHAHRQCTQPSSQAITSEDQFQGPPSTSNFDDHLGRPTTTTTSKGQLRRLPPIAYSGNIQPPLLMGNSDDHP
Homology
[Close]
BLAST of CaUC04G070980 vs. NCBI nr
Match: XP_011653836.1 (L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis sativus] >XP_031739823.1 L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis sativus] >KGN54649.1 hypothetical protein Csa_012767 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IHKVSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 383 IQGEEIHKVSGLINLFGIESPGLTSSLAIAEHIAARYM 420

[Close]
BLAST of CaUC04G070980 vs. NCBI nr
Match: XP_008455774.1 (PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial [Cucumis melo] >XP_008455776.1 PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IHKVSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 382 IQGEEIHKVSGLINLFGIESPGLTSSLAIAEHIAARYM 419

[Close]
BLAST of CaUC04G070980 vs. NCBI nr
Match: XP_022154533.1 (L-2-hydroxyglutarate dehydrogenase, mitochondrial [Momordica charantia] >XP_022154534.1 L-2-hydroxyglutarate dehydrogenase, mitochondrial [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IH+VSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 381 IQGEEIHRVSGLINLFGIESPGLTSSLAIAEHIAARYV 418

[Close]
BLAST of CaUC04G070980 vs. NCBI nr
Match: XP_038882694.1 (L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Benincasa hispida] >XP_038882695.1 L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAA Y+
Sbjct: 381 IQGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAAIYM 418

[Close]
BLAST of CaUC04G070980 vs. NCBI nr
Match: XP_023913849.1 (L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Quercus suber])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GED H V GLVNLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 399 IQGEDAHGVPGLVNLFGIESPGLTSSLAIAEHIAARYL 436

[Close]
BLAST of CaUC04G070980 vs. ExPASy Swiss-Prot
Match: Q9LES4 (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=L2HGDH PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+ H V GLVNLFGIESPGLTSSLAIAEHIA +++
Sbjct: 445 IQGEETHGVPGLVNLFGIESPGLTSSLAIAEHIANKFL 482

[Close]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match: A0A1S3C1T2 (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495875 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IHKVSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 382 IQGEEIHKVSGLINLFGIESPGLTSSLAIAEHIAARYM 419

[Close]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match: A0A0A0L0R8 (DAO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G416450 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IHKVSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 383 IQGEEIHKVSGLINLFGIESPGLTSSLAIAEHIAARYM 420

[Close]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match: A0A6J1DKK0 (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021786 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-09
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IH+VSGL+NLFGIESPGLTSSLAIAEHIAARY+
Sbjct: 381 IQGEEIHRVSGLINLFGIESPGLTSSLAIAEHIAARYV 418

[Close]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match: D7TQ69 (DAO domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g00210 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GEDIH V GLVNLFGIESPGLTSS+AIAEHI ARY+
Sbjct: 386 IQGEDIHGVPGLVNLFGIESPGLTSSMAIAEHIVARYL 423

[Close]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match: A0A2P5EW18 (FAD dependent oxidoreductase OS=Trema orientale OX=63057 GN=TorRG33x02_144130 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+IH VSGLVNLFGIESPGLTSSLAIAEH+A R++
Sbjct: 378 IQGEEIHGVSGLVNLFGIESPGLTSSLAIAEHVATRFL 415

[Close]
BLAST of CaUC04G070980 vs. TAIR 10
Match: AT3G56840.1 (FAD-dependent oxidoreductase family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MMGEDIHKVSGLVNLFGIESPGLTSSLAIAEHIAARYI 39
           + GE+ H V GLVNLFGIESPGLTSSLAIAEHIA +++
Sbjct: 445 IQGEETHGVPGLVNLFGIESPGLTSSLAIAEHIANKFL 482

The following BLAST results are available for this feature:
BLAST of CaUC04G070980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653836.19.3e-0986.84L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis sativus] >... [more]
XP_008455774.19.3e-0986.84PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial [Cucumis melo] >XP_... [more]
XP_022154533.11.2e-0884.21L-2-hydroxyglutarate dehydrogenase, mitochondrial [Momordica charantia] >XP_0221... [more]
XP_038882694.12.1e-0889.47L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Benincasa hispida]... [more]
XP_023913849.11.7e-0784.21L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Quercus suber][more]
BLAST of CaUC04G070980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LES42.1e-0873.68L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of CaUC04G070980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C1T24.5e-0986.84L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0L0R84.5e-0986.84DAO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G416450 PE=4 SV... [more]
A0A6J1DKK05.9e-0984.21L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Momordica charantia OX=3673... [more]
D7TQ691.1e-0781.58DAO domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g00210 PE... [more]
A0A2P5EW181.9e-0778.95FAD dependent oxidoreductase OS=Trema orientale OX=63057 GN=TorRG33x02_144130 PE... [more]
BLAST of CaUC04G070980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56840.11.5e-0973.68FAD-dependent oxidoreductase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 1..39
e-value: 2.3E-10
score: 42.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G070980.1CaUC04G070980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
molecular_function GO:0047545 2-hydroxyglutarate dehydrogenase activity
molecular_function GO:0003973 (S)-2-hydroxy-acid oxidase activity