CaUC04G070580 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G070580
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Copper-transporting ATPase RAN1
Location	Ciama_Chr04: 17781005 .. 17784588 (+)
RNA-Seq Expression	CaUC04G070580
Synteny	CaUC04G070580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGACGGGATCAAAGACTCACCGGCACTAGTGGCTGCAGACGTTGGAATGGCAATTGGTGCAGGCACAGACATTGTCATTGAGGCAGCTAACATAGTTCTCATGAAAATTAACTTGGAGGATATCATAACTCTCCCTCATCATTGGGTTGGCTTGGCCAAACCCAGTGAAGGCCCAAGCTCGACCTAGGCCCAAGCCCCTAGGCCTAAGCCATTGTTTGGGCTTGAATCGGGCCGACCCAACCTTCAATAACCAAAATCATGGCCCTAACCTTGGGCTCGGCTCTTTGGATCAAAGTTTGGGTCGAGCTTGAGTCAAGCTTGGGTCGGCCCATTGAATATTAATTATTTAATTATTTAAATATGTATGTGTACATTTTAAATTGTCTTAATGAAATGTTATTAAAATTTATTTATTTTGAGTTGGTTTAGTGATAGGTTTAATAGGTCAGCTCGTTTGGGCCATATTTAGATCTGCCCATGGGTCAACCCGATTATAAAAAGGGTGATTCATATCCAATCCAATGAATAAATTGTTGGGTTGGGCTAGGGCGGCCACACATTGACTTTGGGTCGAGTTTGGATCGGCTAGGCTTGCGCCGACCTTTGGGCTTCGAGCTTGTTGATGATGTGAGGGGGACATGTGCCCCCCTTGGCCCCTTGATATATCTGCCCGTTTTGGAATATGTTTTGCCAAAAGAAAAATTTGTAGGTTTGCTTACGCCCTTACACAGGCCGTGGATGTGGTTGTGCTTACTTCTGCCGTCGTTCTTGGGCGTTATCTTTGGAGGGCAGAGTCGAGGGTGTGGGAGGCAGTTGTTTGAAAACCTGAGGGGGGTTTGCAGTTGAACATTGAGCACGTCAAAGAGAGAAATATATTATTGGTGCTTTAGTTTTTTTTTAAGATATTAATTTAAACCAACCCTAAACTTTCTTAAAGTACAGTATTTGGGGGCATTTAGTTGAGTTATAAAATCTTAAATTAATATGTTGAAGTCAGAAAATGTGTTTGGAGTATAGAGTTATAAGATGAAATTCTTCGATAAATATACAAAATAGAGAAATATAAGAAGATGGAGTTTCTCGATAGTATGCAAACTTCAATAGTGTTTACTATTGAAGTTAAGTTACTTAGCACCAACTTATTTAGTTTGTGGGCCAAATACCCCTAAGTGTATTAATCTACACTCTTCATTAATTGTACGAGGTTTATAATTGTATTAATTAAAACCTTAAACTTTCATAAGCAAATCAATTTAGACTCTCAATTAAGATTTTCTTTTAAATTATTCGTATGCAAACTTCAATAATGTTTACTATTGAAGTCAAGTTACTTAGCACCAACTTATTTAGTTTGTAGGCCAAACACCCCTAAGTGTATTAATTTACACTCTTCATTAATTGTGCGAGGTTTATAATTGTATTAATTAAAACATTAAACTTTCATAAGCAAATCAATTTAGACTCTTAATTAAGATTTTCTTTTAAATTATTCGTATGCACTAATTCTAATCATCTATTTTATTAATTTAACATTCAAAAAAGTCTAATAACATATAAGAATTGATGCAGTGATGATTTTCGAATGTAATCTTAATAGATGGCTTAAGTTGATTTACTTATAACGATTTTGAAGTTTAATTTAAAAAAATGATATGTTACACACTCAAACTATGTCTGAAGGAGAATGTTACTTAATACATTTATGAAAGTTCAAGATTTAAATTGATAAAATAATTAGTTTAAATTTTAAATTAATACACAAAAAAAAAGAATTAAAATATTTATAAAAAGAAAGTAAAAAACTTGCCACATGCATGTATGTATTGTCACAACGTCATCGCGACGCGGAGCGGCCGACGTTGAGCATAGGGAAGGTATTAGCACCCTACAACGTAACACCCGTTTGATTTTTTTTTTTTTTTTTGTTATCCAATTCATTTTATTAAAGCTAGTCTTTAATTGAAAAAAAATGCTTACTTTAGAAAAAAAATTAAATAAAATATGACTAATTGAATAGTTCCCAAGTAGAGGTGTTCCCTTACGGTCAACTTAAGTATCCAGCCTAGACAGAACTATTATTTATAGTCACTTTTATTTGAAATTCATAGTCAAACTTTATTTTTATATCATAAATTCAATTGAAATGGAGAAAATCAATTAACACCTAAATGTTACAATTGAATTTGAACAATGTCTCACTACATCTCACTCTAACTTTAAAATTAAAGTAGAGTCGCATTTTATGGGCGAACAAGCGTCCATCAATATATTATCATGTTAATGTTTGAAATCTCTAGTTAGAGAAAACATTTACATCAAGAATTTGAGACATTTGGCAATCTCAACTTCGTCATAAGATTAGAACGATAATTAAAGGATTGTCTTATGTAGATCTCAACTCATATTTTAGAAGTAAAATATGAATCAACCCTTATGAGTGGTGTAAGCCCTTCAAAAGAAGATTGGAATTCATTTTGTAAATCAAGGTGAAAACCAAATGGAAATTTCATTTAAAATATTCAAATTTGAATGAAATTGATATTCATTTGAAAACTTTAAATTAAAATCGAGTTTTAAATCATAAAAAAAAAAAGAATCATTTTTATTTTGAGAATTCAAATTAAAACAAATTTGGAATATTTGGAAATGAAACTTGAAAAAGAAATTGAAATTCAATTGATAAATATGAATTAAAACCAAGTTAAAAATCTATGACAATTTCAAATTAAAGTTGAAATTGAGATGTTGTTTTTTTTAAATAAATAAAAAAAATCAAAACTAAAGTTATACAAAATTCATTTAAAATCAAATTGAAGGGCTCGATACTATAATGATTTTGGAATTTCTTTTAGTATTTTTAATTGAAATTAAAATGAAATTTGGGAAACTTCTACGAAAACTAATTGAAACTAAAAGCCAAATACAATTTATTTAGAAATATCAAATTAGAAAATTAGATTAAAACTTTTTTCTAAAACCTAATTAAAACTAAATTGAAATTCAACCTAAATATTATAACTAAACCCAATTTAGACTTTTTTAACTACGACCAATATAAGATTGGTATAGAAATTTCTAATTAAAGCGAATTAAGTAATGGAAATTTGGAAGTAATATCATATTGGGTTTTAAAATAATGAAAAGAAATAGTGAATAATAAGTGAATAAATAAATTAAATGAATAATTGGCGGGTCACCATTTTACTTTACCAATTTTACTCTCTCTTTCTTTCCTTCTTCCCCATAATTCTTCTCTTCCTCTTCTCCTCCTTCTTCAACTTTTAACTTTCTTCTTCTTCCACCATGCAAGCTGCAATAGGTGTTTAGAGCTTCGTCGTAGTCACCGTCGTTCCAGTCTTCGTTGCCATAATCGTTGCGAGCAGAAGGTTGGATCTCCACTGGAGTTCACACTGTGTGGGTTTTGAAGACGGGCTTTTAGTCGTCGTGGTTTGCTGCAGGGCATCTGATTCGCGATGGATATCCATCGTGCGCCGCACAAGGAGTTCGCCGGAATCGTCGGTGGTAGCTCGGGGTGAATACTCATCAGATCTTGCTACCTCTTGCCTTGAACATTGA

mRNA sequence

ATGGTGGGAGACGGGATCAAAGACTCACCGGCACTAGTGGCTGCAGACGTTGGAATGGCAATTGGTGCAGGCACAGACATTGTTTGCTTACGCCCTTACACAGGCCGTGGATGTGGTTGTGCTTACTTCTGCCGTCGTTCTTGGGCGTTATCTTTGGAGGGCAGAGTCGAGGTCTTCGTTGCCATAATCGTTGCGAGCAGAAGGTTGGATCTCCACTGGAGTTCACACTGTGTGGGTTTTGAAGACGGGCTTTTAGTCGTCGTGGTTTGCTGCAGGGCATCTGATTCGCGATGGATATCCATCGTGCGCCGCACAAGGAGTTCGCCGGAATCGTCGGTGGTAGCTCGGGGTGAATACTCATCAGATCTTGCTACCTCTTGCCTTGAACATTGA

Coding sequence (CDS)

ATGGTGGGAGACGGGATCAAAGACTCACCGGCACTAGTGGCTGCAGACGTTGGAATGGCAATTGGTGCAGGCACAGACATTGTTTGCTTACGCCCTTACACAGGCCGTGGATGTGGTTGTGCTTACTTCTGCCGTCGTTCTTGGGCGTTATCTTTGGAGGGCAGAGTCGAGGTCTTCGTTGCCATAATCGTTGCGAGCAGAAGGTTGGATCTCCACTGGAGTTCACACTGTGTGGGTTTTGAAGACGGGCTTTTAGTCGTCGTGGTTTGCTGCAGGGCATCTGATTCGCGATGGATATCCATCGTGCGCCGCACAAGGAGTTCGCCGGAATCGTCGGTGGTAGCTCGGGGTGAATACTCATCAGATCTTGCTACCTCTTGCCTTGAACATTGA

Protein sequence

MVGDGIKDSPALVAADVGMAIGAGTDIVCLRPYTGRGCGCAYFCRRSWALSLEGRVEVFVAIIVASRRLDLHWSSHCVGFEDGLLVVVVCCRASDSRWISIVRRTRSSPESSVVARGEYSSDLATSCLEH

Homology

[Close]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot
Match: Q9SH30 (Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana OX=3702 GN=HMA5 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPALVAADVGMAIGAGTDI
Sbjct: 863 MVGDGINDSPALVAADVGMAIGAGTDI 889

[Close]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot
Match: Q9S7J8 (Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana OX=3702 GN=RAN1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPAL AADVGMAIGAGTD+
Sbjct: 874 MVGDGINDSPALAAADVGMAIGAGTDV 900

[Close]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot
Match: A3AWA4 (Copper-transporting ATPase HMA5 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA5 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPALV+ADVG+AIGAGTD+
Sbjct: 882 MVGDGINDSPALVSADVGLAIGAGTDV 908

[Close]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot
Match: Q6H7M3 (Copper-transporting ATPase HMA4 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA4 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPAL AADVG+AIGAGTD+
Sbjct: 845 MVGDGINDSPALAAADVGLAIGAGTDV 871

[Close]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot
Match: A0A0P0X004 (Cation-transporting ATPase HMA5 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA9 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPAL AADVGMAIG GTDI
Sbjct: 876 MVGDGINDSPALAAADVGMAIGGGTDI 902

[Close]

BLAST of CaUC04G070580 vs. TAIR 10
Match: AT1G63440.1 (heavy metal atpase 5 )

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPALVAADVGMAIGAGTDI
Sbjct: 863 MVGDGINDSPALVAADVGMAIGAGTDI 889

[Close]

BLAST of CaUC04G070580 vs. TAIR 10
Match: AT5G44790.1 (copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) )

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1   MVGDGIKDSPALVAADVGMAIGAGTDI 28
           MVGDGI DSPAL AADVGMAIGAGTD+
Sbjct: 874 MVGDGINDSPALAAADVGMAIGAGTDV 900

The following BLAST results are available for this feature:

BLAST of CaUC04G070580 vs.


Match Name	E-value	Identity	Description

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH30	3.5e-06	96.30	Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana OX=3702 GN=HMA5...	[more]
Q9S7J8	1.3e-05	88.89	Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana OX=3702 GN=RAN1 PE=1 SV=...	[more]
A3AWA4	2.3e-05	85.19	Copper-transporting ATPase HMA5 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA5...	[more]
Q6H7M3	2.9e-05	85.19	Copper-transporting ATPase HMA4 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA4...	[more]
A0A0P0X004	2.9e-05	88.89	Cation-transporting ATPase HMA5 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA9...	[more]

BLAST of CaUC04G070580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CaUC04G070580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63440.1	2.5e-07	96.30	heavy metal atpase 5	[more]
AT5G44790.1	9.4e-07	88.89	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPas...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023214	HAD superfamily	GENE3D	3.40.50.1000		coord: 1..27 e-value: 1.1E-7 score: 33.9
IPR036412	HAD-like superfamily	SUPERFAMILY	56784	HAD-like	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G070580.1	CaUC04G070580.1	mRNA