CaUC04G070300 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G070300
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDUF4283 domain-containing protein
LocationCiama_Chr04: 16029860 .. 16030459 (+)
RNA-Seq ExpressionCaUC04G070300
SyntenyCaUC04G070300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGAGTGTAGGAGTGGTCCCGTCTAGGGAGGCTCCTAGGTTAGTGGAGTAGGCCTTGGTAGTTTCCAACCTTATAGCTCCTGATATTGCTAATGGGGAGGAGGAGAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGGTAGGAAGGGGGCTTAGGTTTGGTGGTTCATAACCTTTTTCATAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG

mRNA sequence

ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG

Coding sequence (CDS)

ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG

Protein sequence

MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSRQDEVLEVALTTKGNKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALVDSGPSSLLVVGDLGDQGGPLGEFVVVWWDSLSHD
Homology
BLAST of CaUC04G070300 vs. NCBI nr
Match: TYK01660.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 6   DFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR--QDEVLEVALTTKG 65
           D  MP  +   +RG D I+PV Y WKP KC  C +FGH  G+C R  + ++ E  +    
Sbjct: 84  DSHMPVEITANLRGVDFIIPVNYKWKPRKCNLCCAFGHSSGKCPRSVESKLEEGEIRNSP 143

Query: 66  NKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALVDSGPSSLLVV 125
           N+    V       + K D+FI V+  KR++   +S+++    SL + + +S   SLL V
Sbjct: 144 NRPSRQVKK----EVGKRDEFILVTHKKREL---VSVRD-RGKSLEVTIPNSF-GSLLKV 197

Query: 126 GDL 127
           GD+
Sbjct: 204 GDV 197

BLAST of CaUC04G070300 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR-------QDE 60
           +++ GD  MP+ + V +RG D IV + Y+WKP KC  C  FGH GG+C R       Q+E
Sbjct: 240 VKLDGDSHMPAEITVSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEE 299

Query: 61  VLEVALTTKGN 65
           V+     +KG+
Sbjct: 300 VVSKVSPSKGD 310

BLAST of CaUC04G070300 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR-------QDE 60
           +++ G+F M + + V +RG D  V V Y+WKP+KC  C + GH GG+C R       Q+E
Sbjct: 106 VKLEGEFNMRAEITVNLRGVDFNVSVNYEWKPQKCNLCCAIGHSGGKCPRSVESKIIQEE 165

Query: 61  VLEVALTTKGNKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALV 120
           V+   +  KG  V +   A  V    K+ +   +       G  +  +  + D     LV
Sbjct: 166 VVSKIIPGKGEGVDSEPCAKVVLESFKQLEEGEIRSSPNRHGSHVEKEVGKRDE--FTLV 225

Query: 121 DSGPSSLLVVGDLG 128
               S L+ V D G
Sbjct: 226 TRKKSELVSVRDRG 237

BLAST of CaUC04G070300 vs. NCBI nr
Match: XP_038876497.1 (uncharacterized protein LOC120068928 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSRQ 52
           ++V  D   PS++ VR++G++ I+PV Y+WKP +C  C SFGH G  C +Q
Sbjct: 88  VQVDDDLLFPSTVTVRMQGQEFIIPVVYEWKPRRCTFCGSFGHPGAVCEKQ 138

BLAST of CaUC04G070300 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-06
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSRQDE--VLEVA 60
           +E+ G   MPS + V +RG +  V V Y+WKP KC  C +FGH   +CSR +E   ++  
Sbjct: 326 VELEGGSNMPSEITVNLRGVEFNVSVNYEWKPRKCNLCGAFGHSSSKCSRSEESKTIQEE 385

Query: 61  LTTKGNKV 67
           +  KG+ V
Sbjct: 386 VVHKGDDV 393

BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5D3BRD2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00270 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.7e-08
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 6   DFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR--QDEVLEVALTTKG 65
           D  MP  +   +RG D I+PV Y WKP KC  C +FGH  G+C R  + ++ E  +    
Sbjct: 84  DSHMPVEITANLRGVDFIIPVNYKWKPRKCNLCCAFGHSSGKCPRSVESKLEEGEIRNSP 143

Query: 66  NKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALVDSGPSSLLVV 125
           N+    V       + K D+FI V+  KR++   +S+++    SL + + +S   SLL V
Sbjct: 144 NRPSRQVKK----EVGKRDEFILVTHKKREL---VSVRD-RGKSLEVTIPNSF-GSLLKV 197

Query: 126 GDL 127
           GD+
Sbjct: 204 GDV 197

BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR-------QDE 60
           +++ GD  MP+ + V +RG D IV + Y+WKP KC  C  FGH GG+C R       Q+E
Sbjct: 240 VKLDGDSHMPAEITVSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEE 299

Query: 61  VLEVALTTKGN 65
           V+     +KG+
Sbjct: 300 VVSKVSPSKGD 310

BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-07
Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR-------QDE 60
           +++ G+F M + + V +RG D  V V Y+WKP+KC  C + GH GG+C R       Q+E
Sbjct: 106 VKLEGEFNMRAEITVNLRGVDFNVSVNYEWKPQKCNLCCAIGHSGGKCPRSVESKIIQEE 165

Query: 61  VLEVALTTKGNKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALV 120
           V+   +  KG  V +   A  V    K+ +   +       G  +  +  + D     LV
Sbjct: 166 VVSKIIPGKGEGVDSEPCAKVVLESFKQLEEGEIRSSPNRHGSHVEKEVGKRDE--FTLV 225

Query: 121 DSGPSSLLVVGDLG 128
               S L+ V D G
Sbjct: 226 TRKKSELVSVRDRG 237

BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSRQDE--VLEVA 60
           +E+ G   MPS + V +RG +  V V Y+WKP KC  C +FGH   +CSR +E   ++  
Sbjct: 326 VELEGGSNMPSEITVNLRGVEFNVSVNYEWKPRKCNLCGAFGHSSSKCSRSEESKTIQEE 385

Query: 61  LTTKGNKV 67
           +  KG+ V
Sbjct: 386 VVHKGDDV 393

BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 38/134 (28.36%), Postives = 60/134 (44.78%), Query Frame = 0

Query: 1   MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSR--QDEVLEVA 60
           +E+     MP+ + V +RG D  V V Y+WKP KC  C +FGH G  CSR  + + ++  
Sbjct: 472 VELEAGSNMPAEITVSLRGVDFNVSVNYEWKPRKCNLCCAFGHSGSNCSRSVESKTIQEE 531

Query: 61  LTTKGNKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALVDSGPS 120
           +  KG+ V +      V    K+ +   +         ++     + D     LV    S
Sbjct: 532 VVHKGDDVDSEPCGEVVLESFKQLEEGEIRNSPNRHNSQVEKGVGKSDE--FTLVTRRKS 591

Query: 121 SLLVVGDLGDQGGP 133
            L+ V D G +G P
Sbjct: 592 ELVSVRDRGKKGSP 603

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK01660.12.0e-0734.15DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0060724.11.0e-0640.85hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466... [more]
KAA0062888.11.7e-0629.85non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
XP_038876497.12.2e-0645.10uncharacterized protein LOC120068928 [Benincasa hispida][more]
TYK26656.12.9e-0639.71DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BRD29.7e-0834.15DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V0844.8e-0740.85Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc... [more]
A0A5A7V5J28.2e-0729.85Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3DSG91.4e-0639.71DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TWG51.8e-0628.36Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G070300.1CaUC04G070300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity