CaUC04G070300 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGAGTGTAGGAGTGGTCCCGTCTAGGGAGGCTCCTAGGTTAGTGGAGTAGGCCTTGGTAGTTTCCAACCTTATAGCTCCTGATATTGCTAATGGGGAGGAGGAGAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGGTAGGAAGGGGGCTTAGGTTTGGTGGTTCATAACCTTTTTCATAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG ATGGAGGTTGCTGGTGATTTTGAGATGCCCTCTTCTATGATAGTGAGGATTAGGGGCAAAGATTCTATTGTTCCGGTTACTTATGATTGGAAGCCTGAAAAATGTGTGAAGTGTAATTCTTTTGGGCATGGAGGTGGGCAATGTAGTAGGCAGGATGAAGTGTTGGAGGTGGCTCTAACTACTAAGGGGAATAAGGTGGGGACAGGAGTTATGGCTCTGGGTGTTGGTAACCTTGTTAAGGAGGATGACTTCATTCCTGTGTCGAGGTGTAAGAGGGATATGGGGAGGAAGATCAGTCTACAAGAGGCGGAGGATGATTCCTTGGTGTTGGCTTTAGTTGATTCAGGCCCCTCTTCGTTGTTGGTGGTTGGTGACTTGGGTGATCAAGGAGGTCCTTTGGGTGAGTTTGTTGTGGTCTGGTGGGATAGTTTGTCTCATGATTAG MEVAGDFEMPSSMIVRIRGKDSIVPVTYDWKPEKCVKCNSFGHGGGQCSRQDEVLEVALTTKGNKVGTGVMALGVGNLVKEDDFIPVSRCKRDMGRKISLQEAEDDSLVLALVDSGPSSLLVVGDLGDQGGPLGEFVVVWWDSLSHD Homology
BLAST of CaUC04G070300 vs. NCBI nr
Match: TYK01660.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07 Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 0
BLAST of CaUC04G070300 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of CaUC04G070300 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06 Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 0
BLAST of CaUC04G070300 vs. NCBI nr
Match: XP_038876497.1 (uncharacterized protein LOC120068928 [Benincasa hispida]) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06 Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 0
BLAST of CaUC04G070300 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 62.8 bits (151), Expect = 2.9e-06 Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5D3BRD2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00270 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 9.7e-08 Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 0
BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 8.2e-07 Identity = 40/134 (29.85%), Postives = 62/134 (46.27%), Query Frame = 0
BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06 Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of CaUC04G070300 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06 Identity = 38/134 (28.36%), Postives = 60/134 (44.78%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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