CaUC04G069530 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G069530
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	Ciama_Chr04: 11661303 .. 11662315 (+)
RNA-Seq Expression	CaUC04G069530
Synteny	CaUC04G069530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

mRNA sequence

ATGACATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

Coding sequence (CDS)

ATGACATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA

Protein sequence

MTFQMNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK

Homology

[Close]

BLAST of CaUC04G069530 vs. NCBI nr
Match: RZC88934.1 (hypothetical protein C5167_030630 [Papaver somniferum])

HSP 1 Score: 382.1 bits (980), Expect = 3.6e-102
Identity = 196/209 (93.78%), Postives = 196/209 (93.78%), Query Frame = 0


Query: 35  MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 94
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 95  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 154
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 155 SKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 214
           SKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 180

Query: 215 FDESRMYGLEGDLSYLSRSTLQYGVKKPK 244
           FDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 181 FDESRMYGLEGDLSYLSRSTLQYGVKKPK 200

[Close]

BLAST of CaUC04G069530 vs. NCBI nr
Match: RZC70923.1 (hypothetical protein C5167_034128 [Papaver somniferum])

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-87
Identity = 172/185 (92.97%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 35  MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 94
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 95  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 154
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 155 SKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 214
           SKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

Query: 215 FDESR 220
           FDESR
Sbjct: 181 FDESR 176

[Close]

BLAST of CaUC04G069530 vs. NCBI nr
Match: BBN70001.1 (Ribosomal protein S7p/S5e family protein, partial [Prunus dulcis])

HSP 1 Score: 304.7 bits (779), Expect = 7.2e-79
Identity = 162/207 (78.26%), Postives = 166/207 (80.19%), Query Frame = 0


Query: 55  SSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 114
           +SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG
Sbjct: 31  ASGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 90

Query: 115 RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS----------------------------- 174
           RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS                             
Sbjct: 91  RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSYHETKDLLSKEILFGTIICPRSNIEIISE 150

Query: 175 ALSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 233
             SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLID
Sbjct: 151 NRSESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLID 210

[Close]

BLAST of CaUC04G069530 vs. NCBI nr
Match: RZC64142.1 (hypothetical protein C5167_025901, partial [Papaver somniferum])

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-76
Identity = 155/189 (82.01%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 55  SSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 114
           +S SKGDLSVNFS+ITP KPNSALRKV RVRLTSGFEITAYI G+GHN QEHSVVLVRG 
Sbjct: 27  ASDSKGDLSVNFSSITPNKPNSALRKVVRVRLTSGFEITAYIHGVGHNSQEHSVVLVRGV 86

Query: 115 RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSNDSKHLFLHYFGNPRTQSYGYV 174
           RVKDLPGVRYHIVRGTLD VGVK R+QGRSSALSESNSNDSKH FLHYFGNPRTQSYGYV
Sbjct: 87  RVKDLPGVRYHIVRGTLDVVGVKYRKQGRSSALSESNSNDSKHFFLHYFGNPRTQSYGYV 146

Query: 175 KYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRST 234
           KYRISNPSRK           +   IL+L    +ILWKAVFDESRMYGLEGDLSYLSRST
Sbjct: 147 KYRISNPSRK-----------RGKQILNL----KILWKAVFDESRMYGLEGDLSYLSRST 200

Query: 235 LQYGVKKPK 244
           LQYGVKKPK
Sbjct: 207 LQYGVKKPK 200

[Close]

BLAST of CaUC04G069530 vs. NCBI nr
Match: RZC92595.1 (hypothetical protein C5167_029533 [Papaver somniferum])

HSP 1 Score: 287.0 bits (733), Expect = 1.6e-73
Identity = 156/209 (74.64%), Postives = 160/209 (76.56%), Query Frame = 0


Query: 35  MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 94
           MTSKELNEEPYE         S SKGDLSV F    P K  +A                 
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVTFPLSPPPKTKTA----------------- 60

Query: 95  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 154
                       +++LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND
Sbjct: 61  ------------ALLLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 155 SKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 214
           SKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 171

Query: 215 FDESRMYGLEGDLSYLSRSTLQYGVKKPK 244
           FDESRMYGLEGDLSYLSRSTLQYGVKKPK
Sbjct: 181 FDESRMYGLEGDLSYLSRSTLQYGVKKPK 171

[Close]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-43
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 52  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLV 111
           T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 112 RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 145
           RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 95  RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 59  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 118
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 119 LPGVRYHIVRGTLDAVGVKDRQQGRS 145
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.4e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRSSAL 148
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.4e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRSSAL 148
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.4e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRSSAL 148
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL
Match: A0A4Y7KC21 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 5.4e-88
Identity = 172/185 (92.97%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 35  MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 94
           MTSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MTSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 95  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 154
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND
Sbjct: 61  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSND 120

Query: 155 SKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAV 214
           SKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLIDTYRILWKAV
Sbjct: 121 SKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAV 176

Query: 215 FDESR 220
           FDESR
Sbjct: 181 FDESR 176

[Close]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL
Match: A0A5H2Y3L6 (Ribosomal protein S7p/S5e family protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_1328S000100 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.5e-79
Identity = 162/207 (78.26%), Postives = 166/207 (80.19%), Query Frame = 0


Query: 55  SSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 114
           +SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG
Sbjct: 31  ASGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 90

Query: 115 RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS----------------------------- 174
           RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS                             
Sbjct: 91  RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSYHETKDLLSKEILFGTIICPRSNIEIISE 150

Query: 175 ALSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSILDLID 233
             SESNSNDSKH FLHYFGNPRTQSYGYVKYRISNPSRK RETDTQFKVSKQNSILDLID
Sbjct: 151 NRSESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLID 210

[Close]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL
Match: A0A4Y7JVR4 (Uncharacterized protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_025901 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.2e-76
Identity = 155/189 (82.01%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 55  SSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG 114
           +S SKGDLSVNFS+ITP KPNSALRKV RVRLTSGFEITAYI G+GHN QEHSVVLVRG 
Sbjct: 27  ASDSKGDLSVNFSSITPNKPNSALRKVVRVRLTSGFEITAYIHGVGHNSQEHSVVLVRGV 86

Query: 115 RVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALSESNSNDSKHLFLHYFGNPRTQSYGYV 174
           RVKDLPGVRYHIVRGTLD VGVK R+QGRSSALSESNSNDSKH FLHYFGNPRTQSYGYV
Sbjct: 87  RVKDLPGVRYHIVRGTLDVVGVKYRKQGRSSALSESNSNDSKHFFLHYFGNPRTQSYGYV 146

Query: 175 KYRISNPSRKGRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRST 234
           KYRISNPSRK           +   IL+L    +ILWKAVFDESRMYGLEGDLSYLSRST
Sbjct: 147 KYRISNPSRK-----------RGKQILNL----KILWKAVFDESRMYGLEGDLSYLSRST 200

Query: 235 LQYGVKKPK 244
           LQYGVKKPK
Sbjct: 207 LQYGVKKPK 200

[Close]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL
Match: A0A6N2NH77 (Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS516037 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.6e-71
Identity = 151/205 (73.66%), Postives = 158/205 (77.07%), Query Frame = 0


Query: 21  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 80
           ++EGR FS +EK PMTSKELNEEPYE         SGSKGDLSVNF TITPKKPNSALRK
Sbjct: 283 LDEGRSFSTDEKGPMTSKELNEEPYE---------SGSKGDLSVNFYTITPKKPNSALRK 342

Query: 81  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 140
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P                    
Sbjct: 343 VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGEGLRIYP-------------------- 402

Query: 141 QGRSSALSESNSNDSKHLFLHYFGNPRTQSYGYVKYRISNPSRKGRETDTQFKVSKQNSI 200
                + SESNSNDSKH FLHYFGNPRTQSYGY KYRISNPSRK RETDTQFKVSKQNSI
Sbjct: 403 -----SRSESNSNDSKHFFLHYFGNPRTQSYGYGKYRISNPSRKRRETDTQFKVSKQNSI 453

Query: 201 LDLIDTYRILWKAVFDESRMYGLEG 226
           L+LIDTYRILWKAVFDESRMYGLEG
Sbjct: 463 LNLIDTYRILWKAVFDESRMYGLEG 453

[Close]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.0e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 5   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 64
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 65  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 124
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 125 HIVRGTLDAVGVKDRQQGRSSAL 148
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CaUC04G069530 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRS 145
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G069530 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRS 145
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G069530 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 68  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 127
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 128 RGTLDAVGVKDRQQGRS 145
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G069530 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 42  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 101
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 102 NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 145
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of CaUC04G069530 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 42  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 101
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 102 NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 145
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of CaUC04G069530 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC88934.1	3.6e-102	93.78	hypothetical protein C5167_030630 [Papaver somniferum]	[more]
RZC70923.1	1.1e-87	92.97	hypothetical protein C5167_034128 [Papaver somniferum]	[more]
BBN70001.1	7.2e-79	78.26	Ribosomal protein S7p/S5e family protein, partial [Prunus dulcis]	[more]
RZC64142.1	2.6e-76	82.01	hypothetical protein C5167_025901, partial [Papaver somniferum]	[more]
RZC92595.1	1.6e-73	74.64	hypothetical protein C5167_029533 [Papaver somniferum]	[more]

BLAST of CaUC04G069530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	3.0e-43	95.70	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	4.9e-38	91.86	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	6.4e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	6.4e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	6.4e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of CaUC04G069530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7KC21	5.4e-88	92.97	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_034128 PE=3 SV=1	[more]
A0A5H2Y3L6	3.5e-79	78.26	Ribosomal protein S7p/S5e family protein (Fragment) OS=Prunus dulcis OX=3755 GN=...	[more]
A0A4Y7JVR4	1.2e-76	82.01	Uncharacterized protein (Fragment) OS=Papaver somniferum OX=3469 GN=C5167_025901...	[more]
A0A6N2NH77	1.6e-71	73.66	Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS...	[more]
A0A6J1F0L1	6.0e-71	99.30	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]

BLAST of CaUC04G069530 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	3.0e-38	100.00	ribosomal protein S12A	[more]
ATCG01230.1	3.0e-38	100.00	ribosomal protein S12B	[more]
ATCG00905.1	3.0e-38	100.00	ribosomal protein S12C	[more]
AT2G07675.1	1.0e-22	51.46	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.0e-22	51.46	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 106..123 score: 88.58 coord: 123..139 score: 64.3 coord: 87..106 score: 75.14 coord: 71..86 score: 91.32 coord: 139..151 score: 34.19
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 62..142 e-value: 1.7E-29 score: 101.7
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 37..147
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 72..79
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 56..145 e-value: 6.7E-46 score: 153.2
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 68..139 e-value: 1.15708E-53 score: 166.54
None	No IPR available	GENE3D	2.40.50.140		coord: 15..158 e-value: 3.4E-46 score: 158.1
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 37..147
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 64..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G069530.1	CaUC04G069530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome