CaUC04G069150 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G069150
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	PHD finger protein
Location	Ciama_Chr04: 10257790 .. 10258233 (+)
RNA-Seq Expression	CaUC04G069150
Synteny	CaUC04G069150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTTAACGCTCGTCCCCTCAAGAGAATGAAGAGACGTGTCACTGCTGATCTTTACGATTTCCTTTCCTTCCCTTCTTCCTCCATGTCCGCCGCCTCTCCAGATGATTCCGACCACGACCATCTCTTCACCGGCCCTTTCCGGACCAACGTTCGCACCTTCCTTTCTAAGCATGCTCTCCTTCCTCCTCCCTCTTCCTTGTTCCCTCACCTTCTCACATGGCAGATCCTCTTCCGCATCGGCGACCTTGTCGATGGCCCTGATTCTCAACCTGCCGTTGTTTATCTCGATATCGTCGAGGAAGACGTCCCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGTGTTGTTGGTGAGTCTCTCCTTTCTTTCACTTTTTCCGATGGTTTTTCTCTACCTCTTCTCGCCGGCGATCGATCTTTGAAAATCTCGCGAATTTGA

mRNA sequence

ATGGTCGTTAACGCTCGTCCCCTCAAGAGAATGAAGAGACGTGTCACTGCTGATCTTTACGATTTCCTTTCCTTCCCTTCTTCCTCCATGTCCGCCGCCTCTCCAGATGATTCCGACCACGACCATCTCTTCACCGGCCCTTTCCGGACCAACGTTCGCACCTTCCTTTCTAAGCATGCTCTCCTTCCTCCTCCCTCTTCCTTGTTCCCTCACCTTCTCACATGGCAGATCCTCTTCCGCATCGGCGACCTTGTCGATGGCCCTGATTCTCAACCTGCCGTTGTTTATCTCGATATCGTCGAGGAAGACGTCCCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGTGTTGTTGGTGAGTCTCTCCTTTCTTTCACTTTTTCCGATGGTTTTTCTCTACCTCTTCTCGCCGGCGATCGATCTTTGAAAATCTCGCGAATTTGA

Coding sequence (CDS)

ATGGTCGTTAACGCTCGTCCCCTCAAGAGAATGAAGAGACGTGTCACTGCTGATCTTTACGATTTCCTTTCCTTCCCTTCTTCCTCCATGTCCGCCGCCTCTCCAGATGATTCCGACCACGACCATCTCTTCACCGGCCCTTTCCGGACCAACGTTCGCACCTTCCTTTCTAAGCATGCTCTCCTTCCTCCTCCCTCTTCCTTGTTCCCTCACCTTCTCACATGGCAGATCCTCTTCCGCATCGGCGACCTTGTCGATGGCCCTGATTCTCAACCTGCCGTTGTTTATCTCGATATCGTCGAGGAAGACGTCCCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGTGTTGTTGGTGAGTCTCTCCTTTCTTTCACTTTTTCCGATGGTTTTTCTCTACCTCTTCTCGCCGGCGATCGATCTTTGAAAATCTCGCGAATTTGA

Protein sequence

MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPDDSDHDHLFTGPFRTNVRTFLSKHALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVGESLLSFTFSDGFSLPLLAGDRSLKISRI

Homology

[Close]

BLAST of CaUC04G069150 vs. NCBI nr
Match: XP_038881975.1 (PHD finger protein At1g33420 [Benincasa hispida])

HSP 1 Score: 228.8 bits (582), Expect = 3.1e-56
Identity = 116/128 (90.62%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMS---AASPDDS----DHDHLFTGPFRTNVR 60
           MVVNARPLKRMKRRVTADLYDFLSFPSSSMS   AA+ DDS    DHDHLFT PFRTNVR
Sbjct: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSTAAAAASDDSDHDHDHDHLFTAPFRTNVR 60

Query: 61  TFLSKHALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCD 120
           TFLSKHALLPPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCD
Sbjct: 61  TFLSKHALLPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCD 120

Query: 121 QCRVVGES 122
           QCRVVG S
Sbjct: 121 QCRVVGWS 128

[Close]

BLAST of CaUC04G069150 vs. NCBI nr
Match: KAG6595711.1 (PHD finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. NCBI nr
Match: KAG7027672.1 (PHD finger protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. NCBI nr
Match: XP_022925287.1 (PHD finger protein At1g33420-like [Cucurbita moschata])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. NCBI nr
Match: XP_022966209.1 (PHD finger protein At1g33420 [Cucurbita maxima])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. ExPASy Swiss-Prot
Match: Q9C810 (PHD finger protein At1g33420 OS=Arabidopsis thaliana OX=3702 GN=At1g33420 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 6   RPLKRMKR--RVTADLYDFLSFPSSSMSAASPDDSDHDHLFTGPFRTNVRTFLSKHALLP 65
           R  KR +R  R++ADLYDF +FP++ ++  S            PFR  VRTFL+ HA + 
Sbjct: 8   RATKRARRSNRISADLYDFSTFPTAEINGESTT--------LPPFRDGVRTFLATHARVT 67

Query: 66  -PPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPR-SRSVYCDQCRVVGES 122
            PPS+LF  L+TWQI+ R GD  DG D    +V LD+VEEDV R SRSVYC+ C VVG S
Sbjct: 68  FPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWS 119

[Close]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL
Match: A0A6J1HT23 (PHD finger protein At1g33420 OS=Cucurbita maxima OX=3661 GN=LOC111465948 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL
Match: A0A6J1EBC4 (PHD finger protein At1g33420-like OS=Cucurbita moschata OX=3662 GN=LOC111432570 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASPD-DSDHDHLFTGPFRTNVRTFLSKH 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSSMS ++ D DSDHDHLFTGPFRTNV TFL+ H
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSMSTSATDHDSDHDHLFTGPFRTNVHTFLTNH 60

Query: 61  ALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVVG 120
           AL PPPSSLFPHLLTWQILFR+GDLVDGPDSQPAVVYLDIVEEDV RSRSVYCDQCRVVG
Sbjct: 61  ALPPPPSSLFPHLLTWQILFRVGDLVDGPDSQPAVVYLDIVEEDVARSRSVYCDQCRVVG 120

Query: 121 ES 122
            S
Sbjct: 121 WS 122

[Close]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL
Match: A0A5D3DVQ3 (PHD finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00360 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASP-DDSDH-DHLFTGPFRTNVRTFLSK 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSS S++SP  DSDH DH+FT PFR+NVRTFLSK
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSSSSSSPMSDSDHSDHVFTAPFRSNVRTFLSK 60

Query: 61  HALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV 120
           HALLPPPSSLFPHLLTWQILFR+GDLV GPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV
Sbjct: 61  HALLPPPSSLFPHLLTWQILFRVGDLVHGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV 120

Query: 121 GES 122
           G S
Sbjct: 121 GWS 123

[Close]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL
Match: A0A1S3BNE7 (PHD finger protein At1g33420 OS=Cucumis melo OX=3656 GN=LOC103491542 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASP-DDSDH-DHLFTGPFRTNVRTFLSK 60
           MVVNARPLKRMKRRVTADL+DFLSFPSSS S++SP  DSDH DH+FT PFR+NVRTFLSK
Sbjct: 1   MVVNARPLKRMKRRVTADLFDFLSFPSSSSSSSSPMSDSDHSDHVFTAPFRSNVRTFLSK 60

Query: 61  HALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV 120
           HALLPPPSSLFPHLLTWQILFR+GDLV GPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV
Sbjct: 61  HALLPPPSSLFPHLLTWQILFRVGDLVHGPDSQPAVVYLDIVEEDVPRSRSVYCDQCRVV 120

Query: 121 GES 122
           G S
Sbjct: 121 GWS 123

[Close]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL
Match: A0A0A0L117 (PHD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G443130 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.5e-53
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MVVNARPLKRMKRRVTADLYDFLSFPSSSMSAASP---DDSDH-DHLFTGPFRTNVRTFL 60
           MVVN+RPLKRMKRRVTADL+DFLSFPSSS S++S     DSDH DHLFT PFR+NVRTFL
Sbjct: 1   MVVNSRPLKRMKRRVTADLFDFLSFPSSSSSSSSSSPMSDSDHSDHLFTAPFRSNVRTFL 60

Query: 61  SKHALLPPPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPRSRSVYCDQCR 120
           SKHALLPPPSSLFPHLLTWQILFR+GDLV GPDSQPAVVYLDIVEEDVPRSRSVYCDQCR
Sbjct: 61  SKHALLPPPSSLFPHLLTWQILFRVGDLVHGPDSQPAVVYLDIVEEDVPRSRSVYCDQCR 120

Query: 121 VVGES 122
           VVG S
Sbjct: 121 VVGWS 125

[Close]

BLAST of CaUC04G069150 vs. TAIR 10
Match: AT1G33420.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-22
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 6   RPLKRMKR--RVTADLYDFLSFPSSSMSAASPDDSDHDHLFTGPFRTNVRTFLSKHALLP 65
           R  KR +R  R++ADLYDF +FP++ ++  S            PFR  VRTFL+ HA + 
Sbjct: 8   RATKRARRSNRISADLYDFSTFPTAEINGESTT--------LPPFRDGVRTFLATHARVT 67

Query: 66  -PPSSLFPHLLTWQILFRIGDLVDGPDSQPAVVYLDIVEEDVPR-SRSVYCDQCRVVGES 122
            PPS+LF  L+TWQI+ R GD  DG D    +V LD+VEEDV R SRSVYC+ C VVG S
Sbjct: 68  FPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKLVSLDVVEEDVTRSSRSVYCEHCCVVGWS 119

The following BLAST results are available for this feature:

BLAST of CaUC04G069150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881975.1	3.1e-56	90.63	PHD finger protein At1g33420 [Benincasa hispida]	[more]
KAG6595711.1	2.2e-54	89.34	PHD finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7027672.1	2.2e-54	89.34	PHD finger protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925287.1	2.2e-54	89.34	PHD finger protein At1g33420-like [Cucurbita moschata]	[more]
XP_022966209.1	2.2e-54	89.34	PHD finger protein At1g33420 [Cucurbita maxima]	[more]

BLAST of CaUC04G069150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C810	1.5e-21	50.00	PHD finger protein At1g33420 OS=Arabidopsis thaliana OX=3702 GN=At1g33420 PE=1 S...	[more]

BLAST of CaUC04G069150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HT23	1.1e-54	89.34	PHD finger protein At1g33420 OS=Cucurbita maxima OX=3661 GN=LOC111465948 PE=4 SV...	[more]
A0A6J1EBC4	1.1e-54	89.34	PHD finger protein At1g33420-like OS=Cucurbita moschata OX=3662 GN=LOC111432570 ...	[more]
A0A5D3DVQ3	3.1e-54	89.43	PHD finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0...	[more]
A0A1S3BNE7	3.1e-54	89.43	PHD finger protein At1g33420 OS=Cucumis melo OX=3656 GN=LOC103491542 PE=4 SV=1	[more]
A0A0A0L117	4.5e-53	87.20	PHD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G443130 PE=4 SV...	[more]

BLAST of CaUC04G069150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33420.1	1.1e-22	50.00	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46201	PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED	coord: 1..121
None	No IPR available	PANTHER	PTHR46201:SF3	OS01G0877500 PROTEIN	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G069150.1	CaUC04G069150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding