CaUC04G069090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G069090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Reverse transcriptase
Location	Ciama_Chr04: 9627881 .. 9628665 (+)
RNA-Seq Expression	CaUC04G069090
Synteny	CaUC04G069090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGAGCCAATATTTGTTACAATTGTGGACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGATAGTAAACCAGCCAAAGCAAGAGACAGGAACTGGTGATGCCAGTGGTGCTGGGAGACAAAGGGGTCAAGTAGGGAGACCTAGACAGTAGGGAAAGGTGTATGTCATGACTTAGCAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGACTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTTGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGATGCTTTACTAGTACATACTTCTGTTGGTGATCATGTGATTATTGAGCATGTTTAGCGTGATTGTGAGTAGTAGTTGATAATGTAGTTATGTTGGTTGATCTATTGCCTTTAGAGTTAGTAGAGTTTGATGTTATTCTAGGCATGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGCTGAGGTGGTGTTTCAGGGGAAAAGAAAGATTCTTCCTACCTGTGTAATCTCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAAGGTTGTGAAGCGTACCTAGCACATGTAATTAAGGTGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATTCTGCAAGTACACAAGTCAAGTTATAATATAA

mRNA sequence

ATGAGTGGAGCCAATATTTGTTACAATTGTGGACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGATAGTAAACCAGCCAAAGCAAGAGACAGGAACTGGTGATGCCAGTGGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGACTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTTGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGATGCTTTACTAGTACATACTTCTGTTGGCATGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGCTGAGGTGGTGTTTCAGGGGAAAAGAAAGATTCTTCCTACCTGTGTAATCTCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAAGGTTGTGAAGCGTACCTAGCACATGTAATTAAGGTGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATTCTGCAAGTACACAAGTCAAGTTATAATATAA

Coding sequence (CDS)

ATGAGTGGAGCCAATATTTGTTACAATTGTGGACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGATAGTAAACCAGCCAAAGCAAGAGACAGGAACTGGTGATGCCAGTGGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGACTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTTGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGATGCTTTACTAGTACATACTTCTGTTGGCATGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGCTGAGGTGGTGTTTCAGGGGAAAAGAAAGATTCTTCCTACCTGTGTAATCTCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAAGGTTGTGAAGCGTACCTAGCACATGTAATTAAGGTGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATTCTGCAAGTACACAAGTCAAGTTATAATATAA

Protein sequence

MSGANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRGQQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEPWLDALLVHTSVGMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVKFCKYTSQVII

Homology

[Close]

BLAST of CaUC04G069090 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 7.4e-40
Identity = 101/248 (40.73%), Postives = 136/248 (54.84%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G    
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+T T+ IC+  T VL+D GAT  FVS  F   +N+ LEP
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLLDSGATHSFVSSMFLTKINRMLEP 671

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L++ T V                                      GMDFL  ++A+
Sbjct: 672 LPEELVICTPVGDVLLVSEVLCDCEVVVEGLYMSVDLLPLELQTLDVILGMDFLFTHYAS 731

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 198
           ++  +KEV F+KPG  EV+F+G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL
Sbjct: 732 MNCHRKEVTFKKPGSTEVIFKGERNIIPTSLISALKAEKLLRKGCTAFLAHVVEVQEEKL 791

[Close]

BLAST of CaUC04G069090 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 7.4e-40
Identity = 101/248 (40.73%), Postives = 136/248 (54.84%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G    
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+T T+ IC+  T VL+D GAT  FVS  F   +N+ LEP
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLLDSGATHSFVSSMFLTKINRMLEP 671

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L++ T V                                      GMDFL  ++A+
Sbjct: 672 LPEELVICTPVGDVLLVSEVLCDCEVVVEGLYMSVDLLPLELQTLDVILGMDFLFTHYAS 731

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 198
           ++  +KEV F+KPG  EV+F+G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL
Sbjct: 732 MNCHRKEVTFKKPGSTEVIFKGERNIIPTSLISALKAEKLLRKGCTAFLAHVVEVQEEKL 791

[Close]

BLAST of CaUC04G069090 vs. NCBI nr
Match: TYK06319.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-39
Identity = 96/225 (42.67%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G    
Sbjct: 561 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGLFGR 620

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+ GT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 621 PRKQGKVYAMTQQEAEDAPDVIPGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 680

Query: 123 WLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKR 182
             + L ++T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +
Sbjct: 681 LSEGLAIYTPVGDVLLVNERLDVILGMDFLFAHYASMDCHRKEVVFRKPGFPEVVFRGMK 740

Query: 183 KILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK 199
           K++   +IS +KA K+L KGC  +LAH++ V+ EKL+PEDVP VK
Sbjct: 741 KVVSRSLISVLKAEKLLRKGCTTFLAHIVVVQREKLKPEDVPVVK 785

[Close]

BLAST of CaUC04G069090 vs. NCBI nr
Match: KAA0041696.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-39
Identity = 96/225 (42.67%), Postives = 129/225 (57.33%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G    
Sbjct: 561 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGLFGR 620

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+ GT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 621 PRKQGKVYAMTQQEAEDAPDVIPGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 680

Query: 123 WLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKR 182
             + L  +T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +
Sbjct: 681 LSEGLDTYTPVGDVLLVNERLDVILGMDFLFAHYASMDCHRKEVVFRKPGFPEVVFRGMK 740

Query: 183 KILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK 199
           K++   +IS +KA K+L KGC  +LAH++ V+ EKL+PEDVP VK
Sbjct: 741 KVVSRSLISVLKAEKLLRKGCTTFLAHIVVVQREKLKPEDVPVVK 785

[Close]

BLAST of CaUC04G069090 vs. NCBI nr
Match: KAA0060066.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-37
Identity = 104/249 (41.77%), Postives = 134/249 (53.82%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GA 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +       GT  A      G 
Sbjct: 349 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKVVVGR 408

Query: 63  GRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
            RQ+G      QQEAE  P+V+TGT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 409 PRQQGKVYAMTQQEAEDAPDVITGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 468

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L ++T V                                      GMDFL  ++A+
Sbjct: 469 LSEGLAIYTLVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYAS 528

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 199
           +D  +KEV F KPG AEVVF+G RK +   +IS +KA K+L KGC A+LAH++ V+ EKL
Sbjct: 529 MDCHRKEVVFRKPGFAEVVFRGLRKGVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKL 588

[Close]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 101/248 (40.73%), Postives = 136/248 (54.84%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G    
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+T T+ IC+  T VL+D GAT  FVS  F   +N+ LEP
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLLDSGATHSFVSSMFLTKINRMLEP 671

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L++ T V                                      GMDFL  ++A+
Sbjct: 672 LPEELVICTPVGDVLLVSEVLCDCEVVVEGLYMSVDLLPLELQTLDVILGMDFLFTHYAS 731

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 198
           ++  +KEV F+KPG  EV+F+G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL
Sbjct: 732 MNCHRKEVTFKKPGSTEVIFKGERNIIPTSLISALKAEKLLRKGCTAFLAHVVEVQEEKL 791

[Close]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-40
Identity = 101/248 (40.73%), Postives = 136/248 (54.84%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G    
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+T T+ IC+  T VL+D GAT  FVS  F   +N+ LEP
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLLDSGATHSFVSSMFLTKINRMLEP 671

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L++ T V                                      GMDFL  ++A+
Sbjct: 672 LPEELVICTPVGDVLLVSEVLCDCEVVVEGLYMSVDLLPLELQTLDVILGMDFLFTHYAS 731

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 198
           ++  +KEV F+KPG  EV+F+G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL
Sbjct: 732 MNCHRKEVTFKKPGSTEVIFKGERNIIPTSLISALKAEKLLRKGCTAFLAHVVEVQEEKL 791

[Close]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL
Match: A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 96/225 (42.67%), Postives = 130/225 (57.78%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G    
Sbjct: 561 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGLFGR 620

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+ GT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 621 PRKQGKVYAMTQQEAEDAPDVIPGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 680

Query: 123 WLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKR 182
             + L ++T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +
Sbjct: 681 LSEGLAIYTPVGDVLLVNERLDVILGMDFLFAHYASMDCHRKEVVFRKPGFPEVVFRGMK 740

Query: 183 KILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK 199
           K++   +IS +KA K+L KGC  +LAH++ V+ EKL+PEDVP VK
Sbjct: 741 KVVSRSLISVLKAEKLLRKGCTTFLAHIVVVQREKLKPEDVPVVK 785

[Close]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL
Match: A0A5A7TI15 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00260 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-39
Identity = 96/225 (42.67%), Postives = 129/225 (57.33%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---- 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G    
Sbjct: 561 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGLFGR 620

Query: 63  -----------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
                      QQEAE  P+V+ GT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 621 PRKQGKVYAMTQQEAEDAPDVIPGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 680

Query: 123 WLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKR 182
             + L  +T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +
Sbjct: 681 LSEGLDTYTPVGDVLLVNERLDVILGMDFLFAHYASMDCHRKEVVFRKPGFPEVVFRGMK 740

Query: 183 KILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK 199
           K++   +IS +KA K+L KGC  +LAH++ V+ EKL+PEDVP VK
Sbjct: 741 KVVSRSLISVLKAEKLLRKGCTTFLAHIVVVQREKLKPEDVPVVK 785

[Close]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL
Match: A0A5A7V0R0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00330 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 9.8e-38
Identity = 104/249 (41.77%), Postives = 134/249 (53.82%), Query Frame = 0


Query: 3   GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GA 62
           GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +       GT  A      G 
Sbjct: 349 GAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKVVVGR 408

Query: 63  GRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEP 122
            RQ+G      QQEAE  P+V+TGT+ IC+    VL DLGAT  FVS  F   +N+ LEP
Sbjct: 409 PRQQGKVYAMTQQEAEDAPDVITGTILICNVPADVLFDLGATHSFVSSIFLTKLNRMLEP 468

Query: 123 WLDALLVHTSV--------------------------------------GMDFLAKYHAT 182
             + L ++T V                                      GMDFL  ++A+
Sbjct: 469 LSEGLAIYTLVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRLDVILGMDFLFAHYAS 528

Query: 183 IDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKL 199
           +D  +KEV F KPG AEVVF+G RK +   +IS +KA K+L KGC A+LAH++ V+ EKL
Sbjct: 529 MDCHRKEVVFRKPGFAEVVFRGLRKGVSRSLISVLKAEKLLRKGCTAFLAHIVVVQREKL 588

The following BLAST results are available for this feature:

BLAST of CaUC04G069090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037581.1	7.4e-40	40.73	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03091.1	7.4e-40	40.73	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK06319.1	1.3e-39	42.67	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0041696.1	6.3e-39	42.67	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0060066.1	2.0e-37	41.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of CaUC04G069090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G069090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTP3	3.6e-40	40.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T7M6	3.6e-40	40.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3C7J1	6.1e-40	42.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59...	[more]
A0A5A7TI15	3.0e-39	42.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7V0R0	9.8e-38	41.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold16...	[more]

BLAST of CaUC04G069090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 59..118 e-value: 3.6E-8 score: 33.3
None	No IPR available	GENE3D	4.10.60.10		coord: 2..52 e-value: 1.4E-5 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..66
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 109..202
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 109..202
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 7..22 score: 9.965892
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 5..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G069090.1	CaUC04G069090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding