CaUC04G068220 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G068220
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMitochondrial ribosomal protein L37
LocationCiama_Chr04: 5612900 .. 5619050 (-)
RNA-Seq ExpressionCaUC04G068220
SyntenyCaUC04G068220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCACGTGTTTGGTTGCCATAAAAAATCAAATAATTTTCATATAAATGATTTGATTTGCCACAAATTTTACCCTTAAGTTTCTATATTTTAATCTGTATCAATTGTTTCGTCAAACTAAATCCATCTAATCTAAACATGAACATAATCTACACAAACAAAATTGGATTTTTTTTTTTGGTTACATTTCATTTCATAATGTATAAAAATGTTTTATAATTACTAATAAAACAATTTAGTATTAAATTATATAAGAGGCAAAAGAGTAAAATTATATTATATTTTTCATTTCCTTTGAGTATCCAAACAATAAAATTTAATTTGTATGATTTCAAATGAATTTGATTCAAAAGGCATTTAGGAATTTGAAATTATTTATATCTTTTAAAATCTTACCATTTGAAATGATTTTATTCAAATTATAATCCAAAAACAAACCATCAAGTTGATCTAGCAATAACATAAAAAAAGCCAAAAGGCTAAAAGGTCATTATCCCACAATTTTCATAAATATTTCAAATTACATATGAATTATAAATTCTTTAAAAATTCTAATTGAAATTAGAACTTATAATCATGTAAGAATGACCTAAAATAGTGTAGTGGTTCAATTTTTTTTCTTGTTCTATATCATCTGCTATACCATTTATATTTCAATTTCTATTCAAATTCTTTAGAATTTGTGGTTTTGAAATGTTTAGAAAATAATAGTGTCCAATGAAAAAGTTTTAAGGTTATTTTTTATAATTTAATATTAGAAAAACCTAACTCGCATAAGTCATACCCATCTCCATTTCCATCTCCCACCTCCCGCCGCAGTCGTCCGCCGCCGTACCTGATCGCCATTCCAGCCAGTTGCGCCGCTGATCTTCCTTGGATCTCCGGTAAGACTCTCTTTCTCTCTCCCACTATTTTACGGGGTTTTCCTCTCCTTCCACCAGTCCCTGTGGCGGCAAAAACCTCTGAAGCCCAAAAATTTTAGTTACTTGATAAATAGGAGGTTGTGCATATTTTGGAGTGGAATGCCATAAAATGGTTTCTTTGGAGTTGAATGCCAAAAAAATGGTTTGCTAGTACGCATTGTTTGGATGCATACCTCCAACCATTTCTCATATATTTTCAAGAAGTTAGATGAGTCATGACTAGATTTCAATTCAATATCTTCTATTTGATTCATTTTTAACTGTTTTGCAAGACTTTTTTTCTTTCATTTTATCAACATAAAAGGAGCCAATGCTTGATAAAACTACATCAGTGTAAAAGAAAATCCATCACGCTCAATTCACAATGGAACTTTTACTACTTCAACCACTAACCCATTCATATGCAAAATCCAAAAGGCGAGTAATTAGGAGAGAAATTATTGATTTTTCACAAAAACCTCATCAGCTAATGGTTAGTAGCGAAATCCCCAAAAATTCCAATCAAACTAATGCATTTCCTATTCATCGTTGTTCGTCATTTATAGGTGATCAAGTTGACTTCCTTTATTTATTTATTGGTAAGAGTTAGTTTCCTTTTGATTTTGTAGTTTTATTTGAATATTTTCTTTAATGCATAAGCCGTTTGTTCAAAATGATAATCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAATTAAAAGTTTCCTTAGAAGAGTCATAAGTCTCAAAGTAGAAGTTTGCAATTGTAGTTTTATAATCCAATAATCCATCCATTTGAAGAATGGAGTGAGCTGGTGCTGAGTTAATTTCTTTCTTTTGATCTCATAGGATGATATTAGTGTCATGCATCGATGCAAGTCTAATTTCTTTCTATCATGAATTGTTTGGATTTAGGATATCTTGATTAGATTGTAGACTGATCTGAATGTTCAAATTTTGTTCTAGGAAGATCGTATGTCATGAATGTTTTGGAGAAAGTATAGGTTGAAGGAATTGGCCCACATACAACAAACGCTCTCTCCACTCAGCTCACATACTTTCTTTCGTTCCCCTCCTCTTGCATGCATATACTTTAGTGATTGGGGGGTTATCATTACTTGCACCCAACAAGCCACCTTGTCCTCAAGGTGGAAGTCCAAATTTTGTGGTTGGATTGTCGAAGCAATCTCCCATGTAGCATCCTCAGGATTAGCATCCTCAGGATTAGAATGTTCTCATGGGATCAGTACCTCAAATTCACCCTTGTTGCAGGTCGATATTCATAGCCCCAAAAATCTGATGGTTTGTATTGCACAAAAAAGTCAATGAAAACCTGAAGGAACTGGAAACATGAACTGATATAGTCTTATAGCTTTGCAAGGAATCTAAATATGAATTTTCACCACCTCGGGTAAAGCCAATCTGTAAACCATGGGCCCAATCTTGGCCTTGATTTGGAAGGGGCCAACAAAACGTGGAGCTAACTTTGGATGCCTGTGGTGGAAAATAGAAAGTTGCTGATATGGCCTTAGGTTTTGATACATTTACTCATCAAGCTCAAAGCTCACATTCCTTCGTTTTAGATTAGCCATGTCACTCATTCGTTGTAGGCCTTCAATAAATAACATCTTGTTCAAAGTACGTAACATCACATTCTGATACTGGAGTTGGACGTCAACCTTTGCAACCACAGTAGAGTTAGTGTGTTAGCTAATGATAGGTGGGTGCCCAACCATAAACAATTTGAAAGGGAGTTGTTTTGGTGGAAGTATGGCAAGATGTATTGTATTGTAACTAAACTCAACCCAAGGGGCTATTCTATTTTGAAGGTGTGGACATAGCAAGACAGCTTAATGCCAAGCCTCTGATCCTATTTCTTGTTGGGATTACTGAGTGCAGGGTAGTAGATACTTAATAGTTTAACAAGAATAGATACTTAATAGTTTAACAAGAATAAATTGGGCATGCTTGGATAGACGATCAACCACCACCATGATTGTATCATTCACATTGGACTTAGGTAAAACCTTTGGCGGAATCCATTGATATAGTCTCCCATACTTGATTTGGTATCGGTAAAGCCTGAAGCAAACTAGGAGGTGTCAACATTAATGATTTAGCTTGTTGACAAACCATGCACTCCGCTCCAAACCTTCAGATGCTTGCCTTCATTATCGGCCAGAAAACTTCTTTATACATGCATTGGTATGTTTTTCAGGCCCCTTGATGGCCTCCTATTGAATTGTGAAAGTCATGCAAGTGTTAATTTCCCATTGACACACATCTCACCACGCAAGGAATAGCTGTTTTTGGCAGCTGACTGACCTTCCCTCAAAATTGCTTGAGTAGAATTTAACGTGCTTTCCTCCGAGATTTGATCTGTGAACATTGATTTTTTTTTTTTTTATATATATACATATATCTATATATCTGTCAGTGTCCGAGACAGTTTATGCACACCTTGACTAATCTCACGAGACAATTCACTTGATAGTTCAACATTTGGGTGTCAGAGGAAACACCTAAGATATTAAATCCTAGGTAGGTGGCCATTATGGAATGAGTCCATGACACCTTAGCAGTTTGGCCTTTTTTTTTTTTATGTTCCCACTACCACTAGGTCAACCCATGATATTTAAACCGCCATAATGCTCAACAAGCCAAACCCCAAAGCTGGTGGTAATCGAGATAAAACATTCACTGCAATGTTCTCTCTGCCTTATAACTTATTTTTATGCAATAGTAAAATCATACCCCAAAAGCTTCGCAATCCAACGTTGATATTCACTAGCAATTACCTGTAGCTTCAATAAGAACTTGAAATTTTTTTGGTGGATAGGGACACCACTTCTGAATGGTGAACACCATAGCCATCAATTCCTGCTCGCCCATGACCTTAAAATGAGTTGATGAGAAGGCACAACTGATATATGACAGAGGTTGCTGGCTCTGCATCAAAACAACTCCAACAAGCATCTACTCAATTATAAATGGTTTCAAGAAGTCTGGCATCCCAATATGGACATCGAAAACATAGCTAGGTTGAGGCTTTGAAAAGCGTCCTCAGCCTCTAAATGCCATCCAAAATGACCTTTTTTGAGAAGTTGGGTCAAGGGAAATACAATTGAGCCATAATTCACTACAAACTTCTGATAATACCTGGTCAACTCGAGAAATCCTCATAATTCCTTATGGTTTTGAGGGGCTGGCCAACCTCTAACTTGGAGAGGTCATCTGCCAAATGACATGGCTCAAGTACTCCATTCATTCGATTGGTGCGAAACTGACACTTCGAAATTAGCCACCAGTTGGTTGGAAACTCATTTATACTTGAGTAAGATAAAGACATGGTCCTGCGTAGAAGTACTACAAATCAAGGTGCCATTCATGAGACACTGAAATGTTGAAGGGGCGTCCCACAACTCAAAGGGGATAACCAAAAATTTCGGTGACTGTCATATGCTTTGAAAGCAATTTTGTGGACATTTGAGGGGTTCACCCGTATTTTATTGTACCACAACAGCCCAACTTGAGATCGATTTGGAAAACACTTTGGCACCAAATAGTTTGTCGAACAATTCATCCACAATCGGAATCGGGTACTTGTCAGGAATAGTTGGCTTGGTTGAGACCCCTATAATCCAGTCCACACTAAACACCAACCTTCTTCCTTCTTTTTTAGTAATAACCACTGGGTTAGAGAAGGATCTCTTACTTGGCTGAATTGTACTAGTTGTTAACGTTTCACAAACTAATCTTTCGATCTCATCTTTTGGAATTGAGAATGTCTATAAGGCTACACATTCATTGGACCCACTCTTGTTTCTAGTTCAATCGTTTGGTCACAACTCCTATGCATTTGCAGTCTAGCTGGATTCAAATATCATAACATACTGTTGGAGAACCATTCTTAACTCTACTGGTGCTTGTTGAAATGCCCCGTGGGGTAAGTTTGAATTTGCCGCTTCTACCACTGCTCCAGAACATTTATCTCACTTCTGTGGTTAAGAATCTGTGAATGAGGGAGATTCTCCAATATCAAACTAGGTGTACATACCCTTAGAGAGAGGGGATGTCTAAGCGATGCTTGTTGAATGAATTAATGACAGATTTTTCCTTACAGTATAAACTAGAATAAATACTAGTCTTCATTTGTAAACAAGCAGCTTCGTAATAATTAATATTTTGTTTACTGTTTGTTTGCACCCATATTGTTTAGTCATCATTTGATCCTAGTTTCAGCTGTCAAAGTAGAAACTTCATTACATAACACATTGTCCTGTGAATTAGTTCATCAGAACTAATGAATTTGTCTGTTTATGTGTTAGCAGAGGAAAAAAAAATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAAGATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGTGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCGGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

mRNA sequence

ATGAATTCACAAAAACCTAACTCGCATAAGTCATACCCATCTCCATTTCCATCTCCCACCTCCCGCCGCAGTCGTCCGCCGCCGTACCTGATCGCCATTCCAGCCAGTTGCGCCGCTGATCTTCCTTGGATCTCCGAGGAAAAAAAAATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAAGATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGTGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCGGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

Coding sequence (CDS)

ATGAATTCACAAAAACCTAACTCGCATAAGTCATACCCATCTCCATTTCCATCTCCCACCTCCCGCCGCAGTCGTCCGCCGCCGTACCTGATCGCCATTCCAGCCAGTTGCGCCGCTGATCTTCCTTGGATCTCCGAGGAAAAAAAAATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAAGATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGTGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCGGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA

Protein sequence

MNSQKPNSHKSYPSPFPSPTSRRSRPPPYLIAIPASCAADLPWISEEKKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
Homology
[Close]
BLAST of CaUC04G068220 vs. NCBI nr
Match: XP_016899597.1 (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >KAA0041217.1 39S ribosomal protein L54 [Cucumis melo var. makuwa] >TYK16020.1 39S ribosomal protein L54 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 4.6e-62
Identity = 125/137 (91.24%), Postives = 134/137 (97.81%), Query Frame = 0 

Query: 46  EEKKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKE 105
           ++KKMG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKE
Sbjct: 24  KKKKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKE 83

Query: 106 VKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFV 165
           VKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFV
Sbjct: 84  VKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFV 143

Query: 166 KLDTRARIKENNSIKAK 183
           KLDTRARIKENNSIKAK
Sbjct: 144 KLDTRARIKENNSIKAK 160

[Close]
BLAST of CaUC04G068220 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 48  KKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVK 107
           KKM MSQIRLFRRSI VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVK
Sbjct: 7   KKMVMSQIRLFRRSI-VNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVK 66

Query: 108 STTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKL 167
           STTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVE+LPY DLKRFVKL
Sbjct: 67  STTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKL 126

Query: 168 DTRARIKENNSIKAKN 184
           DTRA+IKENNS KAKN
Sbjct: 127 DTRAKIKENNSTKAKN 141

[Close]
BLAST of CaUC04G068220 vs. NCBI nr
Match: XP_008442187.1 (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-60
Identity = 123/133 (92.48%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 50  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 109
           MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 110 TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 169
           TVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 170 RARIKENNSIKAK 183
           RARIKENNSIKAK
Sbjct: 121 RARIKENNSIKAK 133

[Close]
BLAST of CaUC04G068220 vs. NCBI nr
Match: KAE8649745.1 (hypothetical protein Csa_012025 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 7.4e-60
Identity = 123/135 (91.11%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 48  KKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVK 107
           KK  MSQIRLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVK
Sbjct: 94  KKKNMSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVK 153

Query: 108 STTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKL 167
           STTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRKN ESLPYADLKRF+KL
Sbjct: 154 STTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKL 213

Query: 168 DTRARIKENNSIKAK 183
           DTRARIKENNSIKAK
Sbjct: 214 DTRARIKENNSIKAK 228

[Close]
BLAST of CaUC04G068220 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-59
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 50  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 109
           M MSQIRLFRRSI VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKST
Sbjct: 1   MVMSQIRLFRRSI-VNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKST 60

Query: 110 TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 169
           TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVE+LPY DLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDT 120

Query: 170 RARIKENNSIKAKN 184
           RA+IKENNS KAKN
Sbjct: 121 RAKIKENNSTKAKN 133

[Close]
BLAST of CaUC04G068220 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 0 

Query: 86  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHP 145
           KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  ++  P
Sbjct: 42  KGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYPTWLFQ-VNLGP 101

Query: 146 PLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI 180
           P  +L     ES  Y  L R   +    R+ +N  +
Sbjct: 102 P-KKLEELEPESREYWRLLRKQNIWRHNRLSKNKKL 135

[Close]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match: A0A5D3CXE8 (39S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00130 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.2e-62
Identity = 125/137 (91.24%), Postives = 134/137 (97.81%), Query Frame = 0 

Query: 46  EEKKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKE 105
           ++KKMG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKE
Sbjct: 24  KKKKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKE 83

Query: 106 VKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFV 165
           VKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFV
Sbjct: 84  VKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFV 143

Query: 166 KLDTRARIKENNSIKAK 183
           KLDTRARIKENNSIKAK
Sbjct: 144 KLDTRARIKENNSIKAK 160

[Close]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match: A0A1S4DUD4 (39S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.2e-62
Identity = 125/137 (91.24%), Postives = 134/137 (97.81%), Query Frame = 0 

Query: 46  EEKKMGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKE 105
           ++KKMG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKE
Sbjct: 24  KKKKMGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKE 83

Query: 106 VKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFV 165
           VKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFV
Sbjct: 84  VKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFV 143

Query: 166 KLDTRARIKENNSIKAK 183
           KLDTRARIKENNSIKAK
Sbjct: 144 KLDTRARIKENNSIKAK 160

[Close]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match: A0A1S3B544 (54S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486119 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.2e-61
Identity = 123/133 (92.48%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 50  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 109
           MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKST
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 110 TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 169
           TVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELRRKN ESLPYADL+RFVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 170 RARIKENNSIKAK 183
           RARIKENNSIKAK
Sbjct: 121 RARIKENNSIKAK 133

[Close]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match: A0A0A0KYS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.2e-59
Identity = 120/131 (91.60%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 52  MSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 111
           MSQ+RLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 112 VGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRA 171
           VGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRKN ESLPYADLKRF+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 172 RIKENNSIKAK 183
           RIKENNSIKAK
Sbjct: 121 RIKENNSIKAK 131

[Close]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0 

Query: 50  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKST 109
           M MSQIRLFRRS+ +NTKDLI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKST
Sbjct: 1   MAMSQIRLFRRSL-LNTKDLIKLTNVRTFAAGGK-KKGSKGGAATDAPKASILSKEVKST 60

Query: 110 TVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDT 169
           TVVGANILKEGADPK+MADSEYP WLW L+DK P LSELRRK+ ++LPY DLKRFVKLDT
Sbjct: 61  TVVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDT 120

Query: 170 RARIKENNSIKAKN 184
           RARIKENNS KAKN
Sbjct: 121 RARIKENNSSKAKN 132

[Close]
BLAST of CaUC04G068220 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-43
Identity = 92/133 (69.17%), Postives = 109/133 (81.95%), Query Frame = 0 

Query: 52  MSQIRLFRRSIVVNTKDLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTT 111
           M++I L R S   ++KD+++    RTF AA  K+KKG KGG A+DAPK S L+KE+KSTT
Sbjct: 1   MNRIGLIRGS---SSKDVVR----RTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTT 60

Query: 112 VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTR 171
           VVGAN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRRKNVE+LPY DLKRFVKLDTR
Sbjct: 61  VVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTR 120

Query: 172 ARIKENNSIKAKN 184
            +IKENNSIKAKN
Sbjct: 121 GKIKENNSIKAKN 126

[Close]
BLAST of CaUC04G068220 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 85/133 (63.91%), Postives = 104/133 (78.20%), Query Frame = 0 

Query: 52  MSQIRLFRRSIVVNTKDLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTT 111
           M+ IR+F  SI   +KD+++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ 
Sbjct: 1   MNLIRMFGDSI-SRSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 112 VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTR 171
           VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRRKNVE+L + DLKRFVKLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 172 ARIKENNSIKAKN 184
           ARIKEN+SIKAKN
Sbjct: 121 ARIKENHSIKAKN 132

The following BLAST results are available for this feature:
BLAST of CaUC04G068220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899597.14.6e-6291.24PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo] >K... [more]
XP_038883606.18.7e-6194.1239S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida][more]
XP_008442187.11.5e-6092.48PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo][more]
KAE8649745.17.4e-6091.11hypothetical protein Csa_012025 [Cucumis sativus][more]
XP_038883607.11.3e-5994.0354S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388... [more]
BLAST of CaUC04G068220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CPW34.1e-0537.5039S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1... [more]
BLAST of CaUC04G068220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CXE82.2e-6291.2439S ribosomal protein L54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S4DUD42.2e-6291.2439S ribosomal protein L54, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L... [more]
A0A1S3B5447.2e-6192.4854S ribosomal protein L37, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L... [more]
A0A0A0KYS45.2e-5991.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G539610 PE=4 SV=1[more]
A0A6J1JQ612.8e-5285.0754S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of CaUC04G068220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01740.13.9e-4369.17Mitochondrial ribosomal protein L37 [more]
AT5G14290.11.4e-3763.91Mitochondrial ribosomal protein L37 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013870Ribosomal protein L37, mitochondrialPFAMPF08561Ribosomal_L37coord: 102..142
e-value: 1.9E-12
score: 47.8
IPR013870Ribosomal protein L37, mitochondrialPANTHERPTHR2859539S RIBOSOMAL PROTEIN L54, MITOCHONDRIALcoord: 66..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G068220.1CaUC04G068220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome