CaUC04G067980 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G067980
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein TIC 214
Location	Ciama_Chr04: 4226737 .. 4228405 (+)
RNA-Seq Expression	CaUC04G067980
Synteny	CaUC04G067980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAAGGGAGGGGGTTTTGTTTTAAATTAAATATAGTATACCCAACCCGAATCAACATATTTTTTTGTTTAATGCCCCTAATTCTTCCTCAGCCAGGCTCAAGTAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCACGCTGTACTTGTGACCTATCGGGAGAATCGGATGACTGTATCAAAGATGCACTTGCTAGTACTAGTATATCTGAGAATTCTTAATTGTAAATAGATCCAAACTGTGGAACAAAGGATTATCCTTGACCTACATCGAGGTATTGATGGTGATTCTCAAGTATCGCATAACAGAACTTGATACGATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGAGTTACCTACTCTTAACGGTCAAAGTGAACCCTTTCATTTTGAATTCTATAATTCAAAATGAATCAAATCTCCCCAAGTAGGATTCGAAGCTACGACCAATTGGTTAATAGTCGACTGCTCTACCACTGAGCTACTAAGGAACAACGATAAATTAGGTCTCAGAGAATTCAATTCCCAACCCATGACTAATATGAGCTTGAGGTTTCCTTCGTAACTCCCGAAACTTCTTCATAGTGGCTTCATTCCATGCCTCATTTCATAAAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATGCCAATTCCATTCATTTAATATCCATGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATTTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCAGAAAATGCAATAGAAAAGAAAAAGGGAGGTTTGTGATGATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGAGACAACTCATGATGTTCATATTCATCTATTATGCGTCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTATCTCTACCATATCTTTTGTTTCATTTCTTCTGAAACAATCAGAAACATTTTTTTTTTTACCATGGATCTACTACCAAAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTTATTTTTCAATTATTCAACAATTTCATTTTACCAAGTTCAATGTTAGTCAAATTAGTCAACATTTCTATATTTCGATGCAACAACAAGATGTTATTTGTAACATGTAGTTTCATTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGAGTTGGATTGATATTAGTTTGGATACAGCAAAATAATTTTATAGAGAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAAAATACTGTCACCCATTGTTACTAAGAAATTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAACCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTTCGAAACGAACGGGACTAAATAG

mRNA sequence

ATGGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGAGACAACTCATGATGTTCATATTCATCTATTATGCGTCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTAAACATTTTTTTTTTTACCATGGATCTACTACCAAAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTTATTTTTCAATTATTCAACAATTTCATTTTACCAAGTTCAATGTTAGTCAAATTAGTCAACATTTCTATATTTCGATGCAACAACAAGATGTTATTTAGAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAAAATACTGTCACCCATTGTTACTAAGAAATTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAACCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTTCGAAACGAACGGGACTAAATAG

Coding sequence (CDS)

ATGGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTTGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGTCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTCATGGAAGAAGGAGCCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGAGACAACTCATGATGTTCATATTCATCTATTATGCGTCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTAAACATTTTTTTTTTTACCATGGATCTACTACCAAAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTTATTTTTCAATTATTCAACAATTTCATTTTACCAAGTTCAATGTTAGTCAAATTAGTCAACATTTCTATATTTCGATGCAACAACAAGATGTTATTTAGAAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAAAATACTGTCACCCATTGTTACTAAGAAATTGAAAGAAACCTCAGAAATGGAGGAAAAGGGGGAAACCGAGGAAGAAACAGATGTAGAAATAGAAATCACTTTCGAAACGAACGGGACTAAATAG

Protein sequence

MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITRQLMMFIFIYYASLHLALGRPHTITKHFFFYHGSTTKNSMRNLSIQCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLFRKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKLKETSEMEEKGETEEETDVEIEITFETNGTK

Homology

[Close]

BLAST of CaUC04G067980 vs. NCBI nr
Match: YP_009752542.1 (Ycf1 protein [Trichosanthes tubiflora] >QIT04938.1 Ycf1 protein [Trichosanthes tubiflora])

HSP 1 Score: 330.9 bits (847), Expect = 8.3e-87
Identity = 193/269 (71.75%), Postives = 203/269 (75.46%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 68

Query: 61  QLMMFIFIYYASLHLALGRPHTITK--------HF-------FFYHGSTTKNSMRNLSIQ 120
           QLMMFI IYYA LHLALGRPHTIT         HF       FFY+GSTT+NSMRNLSIQ
Sbjct: 69  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFYYGSTTRNSMRNLSIQ 128

Query: 121 CVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF--------------------- 180
           CVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                     
Sbjct: 129 CVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGL 188

Query: 181 -------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKLK 215
                               KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKLK
Sbjct: 189 ILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKLK 248

[Close]

BLAST of CaUC04G067980 vs. NCBI nr
Match: YP_009752554.1 (Ycf1 protein [Trichosanthes tubiflora] >QIT04950.1 Ycf1 protein [Trichosanthes tubiflora])

HSP 1 Score: 330.9 bits (847), Expect = 8.3e-87
Identity = 193/269 (71.75%), Postives = 203/269 (75.46%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 68

Query: 61  QLMMFIFIYYASLHLALGRPHTITK--------HF-------FFYHGSTTKNSMRNLSIQ 120
           QLMMFI IYYA LHLALGRPHTIT         HF       FFY+GSTT+NSMRNLSIQ
Sbjct: 69  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFYYGSTTRNSMRNLSIQ 128

Query: 121 CVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF--------------------- 180
           CVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                     
Sbjct: 129 CVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGL 188

Query: 181 -------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKLK 215
                               KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKLK
Sbjct: 189 ILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKLK 248

[Close]

BLAST of CaUC04G067980 vs. NCBI nr
Match: YP_009753666.1 (Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes wallichiana])

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-85
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 68

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 69  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 128

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 129 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 188

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 189 LILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 248

[Close]

BLAST of CaUC04G067980 vs. NCBI nr
Match: QJD26342.1 (Ycf1 [Trichosanthes kirilowii] >QJD26429.1 Ycf1 [Trichosanthes kirilowii])

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-85
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. NCBI nr
Match: YP_009430686.1 (photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photosystem I assembly protein Ycf1 [Gynostemma cardiospermum])

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-85
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot
Match: Q06GT8 (Protein TIC 214 OS=Drimys granadensis OX=224735 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 8.1e-85
Identity = 186/270 (68.89%), Postives = 197/270 (72.96%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNL+SLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTGFIT 
Sbjct: 8   LGNLLSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LH+ALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHIALGRPHTITVLVLPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSS L +LVNI +FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTSSFIGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFI CVYYLG+I SPIVTKKL
Sbjct: 188 LVLFWIRQKNSIRSNVLIRSNKYLVSELRNSMARIFSILLFIICVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot
Match: A6MM95 (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.4e-84
Identity = 185/270 (68.52%), Postives = 197/270 (72.96%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNL+SLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLLSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSS L +LVNI +FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG++ +PIVTKKL
Sbjct: 188 LVLFWIRQNHSIKSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRMPAPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot
Match: A6MMG9 (Protein TIC 214 OS=Chloranthus spicatus OX=13006 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.0e-84
Identity = 185/270 (68.52%), Postives = 196/270 (72.59%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNL+SLCMKIINSVVVVGLYYGFLTTFS+G SYLFLLRARVMEEG EK+VSATTGFIT 
Sbjct: 8   LGNLLSLCMKIINSVVVVGLYYGFLTTFSVGPSYLFLLRARVMEEGTEKEVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLVLPYLLFHFFWKNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSS L +LVNI +FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIF ILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LVLFWIRQNNSIRSNVLIRSNKYLVSELRNSMARIFRILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot
Match: Q0G9G1 (Protein TIC 214 OS=Liriodendron tulipifera OX=3415 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-83
Identity = 185/270 (68.52%), Postives = 195/270 (72.22%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNL+SLCMKIINSVV VGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTGFIT 
Sbjct: 8   LGNLLSLCMKIINSVVGVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLAL RPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALDRPHTITVLVLPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSS L +LVNI +FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNKMLFVTSSFVGWLIGHIFFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LVLFWIRQNHSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot
Match: Q09FQ2 (Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.8e-83
Identity = 185/266 (69.55%), Postives = 196/266 (73.68%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNL+SLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EK+VSATTGFIT 
Sbjct: 8   LGNLLSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLVLPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPS  L +LVNI +FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSPTLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------RKYLVSELRNSMA--RIFSILLFITCVYYLGKILSPIVTKKLKETS 215
                          KYLVSELRNSMA  RIFSILLFITCVYYLG+I SPIVTKKLKETS
Sbjct: 188 LVLFWIRQNRSIRSNKYLVSELRNSMARIRIFSILLFITCVYYLGRIPSPIVTKKLKETS 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL
Match: A0A6H0ESD4 (Protein TIC 214 OS=Trichosanthes tubiflora OX=1144424 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.0e-87
Identity = 193/269 (71.75%), Postives = 203/269 (75.46%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 68

Query: 61  QLMMFIFIYYASLHLALGRPHTITK--------HF-------FFYHGSTTKNSMRNLSIQ 120
           QLMMFI IYYA LHLALGRPHTIT         HF       FFY+GSTT+NSMRNLSIQ
Sbjct: 69  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFYYGSTTRNSMRNLSIQ 128

Query: 121 CVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF--------------------- 180
           CVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                     
Sbjct: 129 CVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGL 188

Query: 181 -------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKLK 215
                               KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKLK
Sbjct: 189 ILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKLK 248

[Close]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL
Match: A0A6H0ERF2 (Protein TIC 214 OS=Trichosanthes tubiflora OX=1144424 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.0e-87
Identity = 193/269 (71.75%), Postives = 203/269 (75.46%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 68

Query: 61  QLMMFIFIYYASLHLALGRPHTITK--------HF-------FFYHGSTTKNSMRNLSIQ 120
           QLMMFI IYYA LHLALGRPHTIT         HF       FFY+GSTT+NSMRNLSIQ
Sbjct: 69  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFYYGSTTRNSMRNLSIQ 128

Query: 121 CVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF--------------------- 180
           CVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                     
Sbjct: 129 CVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGL 188

Query: 181 -------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKLK 215
                               KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKLK
Sbjct: 189 ILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKLK 248

[Close]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL
Match: A0A6M3S424 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.6e-86
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL
Match: A0A6M3RWE9 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.6e-86
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LILVWIQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL
Match: A0A1P8LE53 (Ycf1 OS=Citrullus mucosospermus OX=519315 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.6e-86
Identity = 193/270 (71.48%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVMEEGAEKKVSATTGFITR 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVMEEG EKKVSATTGFIT 
Sbjct: 8   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITG 67

Query: 61  QLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRNLSI 120
           QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+NSMRNLSI
Sbjct: 68  QLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNSMRNLSI 127

Query: 121 QCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF-------------------- 180
           QCVFLNNLIFQLFN+FILPSSMLV+LVNIS+FRCNNKMLF                    
Sbjct: 128 QCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVG 187

Query: 181 --------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPIVTKKL 215
                                KYLVSELRNSMARIFSILLFITCVYYLG+I SPIVTKKL
Sbjct: 188 LILVWIQQNNSIRSNGLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIVTKKL 247

[Close]

BLAST of CaUC04G067980 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-73
Identity = 170/266 (63.91%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGF 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTGF
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGF 68

Query: 61  ITRQLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRN 120
           I  QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+N MRN
Sbjct: 69  IAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNEMRN 128

Query: 121 LSIQCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF----------------- 180
           L IQCVFLNNLIFQLFN+FILPSSML +LVNI +FRCNNKMLF                 
Sbjct: 129 LRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 188

Query: 181 -------------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPI 206
                                     K+LVSELRNSMARIFSILLFITCVYYLG+I SPI
Sbjct: 189 WVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLGRIPSPI 248

[Close]

BLAST of CaUC04G067980 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-73
Identity = 170/266 (63.91%), Postives = 181/266 (68.05%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGF 60
           +GNLVSLCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTGF
Sbjct: 9   LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGF 68

Query: 61  ITRQLMMFIFIYYASLHLALGRPHTIT----------------KHFFFYHGSTTKNSMRN 120
           I  QLMMFI IYYA LHLALGRPHTIT                KHFF Y GSTT+N MRN
Sbjct: 69  IAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDY-GSTTRNEMRN 128

Query: 121 LSIQCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF----------------- 180
           L IQCVFLNNLIFQLFN+FILPSSML +LVNI +FRCNNKMLF                 
Sbjct: 129 LRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMK 188

Query: 181 -------------------------RKYLVSELRNSMARIFSILLFITCVYYLGKILSPI 206
                                     K+LVSELRNSMARIFSILLFITCVYYLG+I SPI
Sbjct: 189 WVGLVLVWIQQNNSIRSNVVIRSNKYKFLVSELRNSMARIFSILLFITCVYYLGRIPSPI 248

[Close]

BLAST of CaUC04G067980 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 215.7 bits (548), Expect = 3.6e-56
Identity = 122/163 (74.85%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGF 60
           +GNLV LCMKIINSVVVVGLYYGFLTTFSIG SYLFLLRARVM   EEG EKKVSATTGF
Sbjct: 8   LGNLVYLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGF 67

Query: 61  ITRQLMMFIFIYYASLHLALGRPHTITK--------HFFFY--------HGSTTKNSMRN 120
           I  QLMMFI IYYA LHLALGRPHTIT         HFFF+        +GSTT+N MRN
Sbjct: 68  IAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNHKHFFDYGSTTRNEMRN 127

Query: 121 LSIQCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF 145
           L IQCVF NNLIF+LFN+ ILPSSML +LVNI +FRCNNKMLF
Sbjct: 128 LRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLF 170

[Close]

BLAST of CaUC04G067980 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-55
Identity = 121/163 (74.23%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 1   MGNLVSLCMKIINSVVVVGLYYGFLTTFSIGSSYLFLLRARVM---EEGAEKKVSATTGF 60
           +GNLV LCMKIINSVVVVGLYYGFLTTFSIG  YLFLLRARVM   EEG EKKVSATTGF
Sbjct: 8   LGNLVYLCMKIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGF 67

Query: 61  ITRQLMMFIFIYYASLHLALGRPHTITK--------HFFFY--------HGSTTKNSMRN 120
           I  QLMMFI IYYA LHLALGRPHTIT         HFFF+        +GSTT+N MRN
Sbjct: 68  IAGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFFWNNHKHFFDYGSTTRNEMRN 127

Query: 121 LSIQCVFLNNLIFQLFNNFILPSSMLVKLVNISIFRCNNKMLF 145
           L IQCVF NNLIF+LFN+ ILPSSML +LVNI +FRCNNKMLF
Sbjct: 128 LRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLF 170

The following BLAST results are available for this feature:

BLAST of CaUC04G067980 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752542.1	8.3e-87	71.75	Ycf1 protein [Trichosanthes tubiflora] >QIT04938.1 Ycf1 protein [Trichosanthes t...	[more]
YP_009752554.1	8.3e-87	71.75	Ycf1 protein [Trichosanthes tubiflora] >QIT04950.1 Ycf1 protein [Trichosanthes t...	[more]
YP_009753666.1	1.6e-85	71.48	Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes...	[more]
QJD26342.1	1.6e-85	71.48	Ycf1 [Trichosanthes kirilowii] >QJD26429.1 Ycf1 [Trichosanthes kirilowii]	[more]
YP_009430686.1	1.6e-85	71.48	photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photo...	[more]

BLAST of CaUC04G067980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06GT8	8.1e-85	68.89	Protein TIC 214 OS=Drimys granadensis OX=224735 GN=TIC214 PE=3 SV=1	[more]
A6MM95	2.4e-84	68.52	Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1	[more]
A6MMG9	4.0e-84	68.52	Protein TIC 214 OS=Chloranthus spicatus OX=13006 GN=TIC214 PE=3 SV=1	[more]
Q0G9G1	2.0e-83	68.52	Protein TIC 214 OS=Liriodendron tulipifera OX=3415 GN=TIC214 PE=3 SV=1	[more]
Q09FQ2	5.8e-83	69.55	Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1	[more]

BLAST of CaUC04G067980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ESD4	4.0e-87	71.75	Protein TIC 214 OS=Trichosanthes tubiflora OX=1144424 GN=ycf1 PE=3 SV=1	[more]
A0A6H0ERF2	4.0e-87	71.75	Protein TIC 214 OS=Trichosanthes tubiflora OX=1144424 GN=ycf1 PE=3 SV=1	[more]
A0A6M3S424	7.6e-86	71.48	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6M3RWE9	7.6e-86	71.48	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A1P8LE53	7.6e-86	71.48	Ycf1 OS=Citrullus mucosospermus OX=519315 GN=ycf1 PE=4 SV=1	[more]

BLAST of CaUC04G067980 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	3.3e-73	63.91	Ycf1 protein	[more]
ATCG01000.1	3.3e-73	63.91	Ycf1 protein	[more]
ATMG00370.1	3.6e-56	74.85	Ycf1 protein	[more]
AT2G07739.1	1.8e-55	74.23	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 146..214 e-value: 1.7E-29 score: 102.4 coord: 14..144 e-value: 4.6E-66 score: 223.4
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 145..214 coord: 1..144
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 145..214 coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G067980.1	CaUC04G067980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009528	plastid inner membrane