CaUC04G067610 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G067610
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
LocationCiama_Chr04: 2775701 .. 2775922 (+)
RNA-Seq ExpressionCaUC04G067610
SyntenyCaUC04G067610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGCGGTGGTAGTAGAGGTGGAGGAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCGGAGGCGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGAGCAATTCAAGAGGTTACATTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

mRNA sequence

ATGGCCGGCGGTGGTAGTAGAGGTGGAGGAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCGGAGGCGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGAGCAATTCAAGAGGTTACATTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

Coding sequence (CDS)

ATGGCCGGCGGTGGTAGTAGAGGTGGAGGAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCGGAGGCGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGAGCAATTCAAGAGGTTACATTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

Protein sequence

MAGGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYIQDYRAAEKGGK
Homology
BLAST of CaUC04G067610 vs. NCBI nr
Match: XP_008465297.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 60/91 (65.93%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 1  MAGGGSRGGGGGGRD-----------GKSSGGGGGNGGSG----GKGGGG---GTMVAPG 60
          MAGGG  GGGGGG             G S  GGGG GGSG    GKGGGG   GTMVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 SGGAVHISREGFESNSRGYIQDYRAAEKGGK 74
          +GGAVHISR+ FESNSRGY QD+RAAEKGGK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

BLAST of CaUC04G067610 vs. NCBI nr
Match: XP_038900902.1 (uncharacterized protein LOC120087950 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 30 GKGGGGGTMVAPGSGGAVHISREGFESNSRGYIQDYRAAEKGGK 74
          G   G GTMVAPGSGGA HISREGFESN+RGY QD  A++KGGK
Sbjct: 2  GAACGSGTMVAPGSGGAAHISREGFESNARGYFQDLHASQKGGK 45

BLAST of CaUC04G067610 vs. ExPASy TrEMBL
Match: A0A1S3CQ14 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103502951 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 60/91 (65.93%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 1  MAGGGSRGGGGGGRD-----------GKSSGGGGGNGGSG----GKGGGG---GTMVAPG 60
          MAGGG  GGGGGG             G S  GGGG GGSG    GKGGGG   GTMVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 SGGAVHISREGFESNSRGYIQDYRAAEKGGK 74
          +GGAVHISR+ FESNSRGY QD+RAAEKGGK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

BLAST of CaUC04G067610 vs. ExPASy TrEMBL
Match: A0A6J1DFA1 (LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like OS=Momordica charantia OX=3673 GN=LOC111019548 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.4e-04
Identity = 49/77 (63.64%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 1   MAGGGSRGGGGGGRDGKSSGGGGGNGGSGGK--GGGG--GTMVAPGSGGAVHISREGFES 60
           MAGGG  GGGGGG  G   GGGGG GG GG   GGGG  G MVAPGSGG+ +ISR GFES
Sbjct: 60  MAGGGKGGGGGGGGKGGGGGGGGGGGGGGGSKVGGGGNSGMMVAPGSGGSSYISRGGFES 119

Query: 61  NSRGYIQDYRAAEKGGK 74
           N  GY  +   AEK GK
Sbjct: 120 NPGGYFSNLHGAEKSGK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008465297.13.4e-0865.93PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
XP_038900902.13.2e-0675.00uncharacterized protein LOC120087950 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CQ141.7e-0865.93glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1DFA19.4e-0463.64LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like OS=Momordica charantia... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G067610.1CaUC04G067610.1mRNA