CaUC04G067570 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G067570
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein
Location	Ciama_Chr04: 2664062 .. 2665390 (+)
RNA-Seq Expression	CaUC04G067570
Synteny	CaUC04G067570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATAAGTGGAGTAGCTGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGACAGCGGTCTTTGTTTGAGATGAAAAAAAAACAATTGCAGATTTCTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCGTGAGATAGTTATAGTATTTGAATGAAATTAATTAGTAGATTGTGTATCACGTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGACTGTTGATTAGATCAAAATTTAAAGTAACCAATAATTTTCGTTTATCATGGGTAAGGAAGCTAAGGTAGTGGCCCAAGGTAAGAGCTTCATTGAGGTTAATTTTGGTGGTTTTGAGCGCCTAGCGGGCAAGTTGATAAGCCACTGACACTAGGTATGTGCAAGAATTGAGGGCCGAAATAAGTCTTGCTAGTGAGTAGGAGACGGCGCAGTGCATGTGTTGAATGAGACAAGTCTCGCTAGTCGCATTAGTCTCACAGATCTCGCTGATCACGCATGTATCACTAGTCTCGCTAGACACATTAGCCTCACAGATCTCCCTAGACACGTGAATCTTACTCGTCTCACTAGGCCTCGTTAG

mRNA sequence

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGAGACGGCGCAGTGCATGTGTTGAATGAGACAAGTCTCGCTAGTCGCATTAGTCTCACAGATCTCGCTGATCACGCATGTATCACTAGTCTCGCTAGACACATTAGCCTCACAGATCTCCCTAGACACGTGAATCTTACTCGTCTCACTAGGCCTCGTTAG

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGAGACGGCGCAGTGCATGTGTTGAATGAGACAAGTCTCGCTAGTCGCATTAGTCTCACAGATCTCGCTGATCACGCATGTATCACTAGTCTCGCTAGACACATTAGCCTCACAGATCTCCCTAGACACGTGAATCTTACTCGTCTCACTAGGCCTCGTTAG

Protein sequence

MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGDGAVHVLNETSLASRISLTDLADHACITSLARHISLTDLPRHVNLTRLTRPR

Homology

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BLAST of CaUC04G067570 vs. NCBI nr
Match: TYK15676.1 (50S ribosomal protein L14 [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 6.4e-90
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIV VIKK VP
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVPVIKKVVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
           NTPLERSEVI AVI+RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG
Sbjct: 121 NTPLERSEVIIAVIIRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 172

[Close]

BLAST of CaUC04G067570 vs. NCBI nr
Match: XP_022728609.1 (uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharacterized protein LOC111286845 [Durio zibethinus] >XP_022735748.1 uncharacterized protein LOC111289142 [Durio zibethinus] >XP_022735765.1 uncharacterized protein LOC111289179 [Durio zibethinus])

HSP 1 Score: 339.3 bits (869), Expect = 2.4e-89
Identity = 168/188 (89.36%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           R TETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGASNRRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG--DGAVHV 180
             PLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQ+GNPKGTRIFG   G +  
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAIAGELRQ 417

Query: 181 LNETSLAS 187
           LN T + S
Sbjct: 418 LNFTKIVS 425

[Close]

BLAST of CaUC04G067570 vs. NCBI nr
Match: KAF3449786.1 (hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis])

HSP 1 Score: 335.1 bits (858), Expect = 4.6e-88
Identity = 169/189 (89.42%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKG++YRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGMAYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPE+WVAVVKP DNSGARELMCIRIIGASNRRYA IGDVIVAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEFWVAVVKPADNSGARELMCIRIIGASNRRYAQIGDVIVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGDGA--VH 180
           PNTPLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFG  A  + 
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 VLNETSLAS 187
            LN T + S
Sbjct: 181 QLNFTKIVS 189

[Close]

BLAST of CaUC04G067570 vs. NCBI nr
Match: XP_034910603.1 (50S ribosomal protein L14, chloroplastic [Populus alba])

HSP 1 Score: 334.0 bits (855), Expect = 1.0e-87
Identity = 167/188 (88.83%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGIS RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           RP+ETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIG SNRRYAHIGDVI+AVIK+AVP
Sbjct: 61  RPSETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGTSNRRYAHIGDVIIAVIKEAVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGDGA--VHV 180
           N+PLERSEVIRAVIVRT KELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFG  A  +  
Sbjct: 121 NSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQ 180

Query: 181 LNETSLAS 187
           LN T + S
Sbjct: 181 LNFTKIVS 188

[Close]

BLAST of CaUC04G067570 vs. NCBI nr
Match: KAD7117008.1 (hypothetical protein E3N88_04276 [Mikania micrantha])

HSP 1 Score: 329.7 bits (844), Expect = 1.9e-86
Identity = 162/179 (90.50%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FG
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFG 179

[Close]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot
Match: Q8WKP4 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFGDGA--VHVLNETSLAS 187
           ENGMIIRYDDNAAVVIDQEGNPKGTRIFG  A  +  LN T + S
Sbjct: 72  ENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIIS 116

[Close]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-43
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17 MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RPTETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPTETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot
Match: A0ZZ72 (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RPTETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPTETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RPTETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPTETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 80/83 (96.39%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          MKGI++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17 MKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RPTETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPTETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL
Match: A0A5D3CZ11 (50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001730 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.1e-90
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIV VIKK VP
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVPVIKKVVP 120

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
           NTPLERSEVI AVI+RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG
Sbjct: 121 NTPLERSEVIIAVIIRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 172

[Close]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL
Match: A0A6P5XJN5 (30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111284164 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 168/188 (89.36%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 238 MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 297

Query: 61  RPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVP 120
           R TETRMGSGKGSPEYWVAVVKPDNSGARELMCIR+IGASNRRYAHIGDVIVAVIKKAVP
Sbjct: 298 RSTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRVIGASNRRYAHIGDVIVAVIKKAVP 357

Query: 121 NTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG--DGAVHV 180
             PLERSEVIRAVIVRTCKELKR+NGMIIRYDDNAAVVIDQ+GNPKGTRIFG   G +  
Sbjct: 358 KAPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQKGNPKGTRIFGAIAGELRQ 417

Query: 181 LNETSLAS 187
           LN T + S
Sbjct: 418 LNFTKIVS 425

[Close]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL
Match: A0A5N6PW49 (Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_04276 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 9.4e-87
Identity = 162/179 (90.50%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFG+YA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVA 120
           RP ETRMGSGKGSPEYWVAVVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVA
Sbjct: 61  RPAETRMGSGKGSPEYWVAVVKPGRILYELDNSGARELMCIRIIGASNRRYAHIGDVIVA 120

Query: 121 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
           VIK AVPN PLERSEV+RAVIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FG
Sbjct: 121 VIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFG 179

[Close]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL
Match: A0A385G255 (Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 6.1e-86
Identity = 158/173 (91.33%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITI 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGASNRRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFG
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIHYNDNAAVVIDQEGNPKGTRIFG 173

[Close]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL
Match: A0A394DIF1 (Ribosomal_L16 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_32007 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.9e-86
Identity = 163/189 (86.24%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKP+T+
Sbjct: 1   MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPITV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAV 120
           RPTETRMGSGKGSPEYWVAVVKP DNSGARELMCIRIIGASNRRYA+IGD++VAVIK+AV
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKEAV 120

Query: 121 PNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGDGA--VH 180
           PNTPLERSEVIRAVIVRTCKELKR NGMII Y+DNAAVVIDQEGNPKGTRIFG  A  + 
Sbjct: 121 PNTPLERSEVIRAVIVRTCKELKRSNGMIIYYNDNAAVVIDQEGNPKGTRIFGAIARELR 180

Query: 181 VLNETSLAS 187
            LN T + S
Sbjct: 181 QLNFTKIVS 189

[Close]

BLAST of CaUC04G067570 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-42
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIFG 173
            NG IIRYDDNAAVVIDQEGNPKGTR+FG
Sbjct: 72  NNGTIIRYDDNAAVVIDQEGNPKGTRVFG 100

[Close]

BLAST of CaUC04G067570 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-41
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          +KGIS RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17 LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RP ETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPAETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of CaUC04G067570 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-26
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PTETRMGSGKGSPEYWVAVVKP 84
           P ETRMG GKG+P +WVAVVKP
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKP 926

[Close]

BLAST of CaUC04G067570 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-15
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 2   KGISYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIF 61
           +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F
Sbjct: 54  RGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVF 113

Query: 62  PDKPVTLRPTETRMGSGKGSPEYWVAVV 82
            D P+T +PTE RMG GKG+P  W+A V
Sbjct: 114 ADLPITGKPTEVRMGRGKGNPTGWIARV 141

[Close]

BLAST of CaUC04G067570 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +  R
Sbjct: 58  DNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGR 117

Query: 144 ENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGDGAVHVLNETSLASRISLTDLADH 197
            +G  +R+DDNA V++D        +  P GTR+FG     V +E      + +  LA H
Sbjct: 118 VDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGP----VPHELRKKKHLKILALAQH 171

The following BLAST results are available for this feature:

BLAST of CaUC04G067570 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15676.1	6.4e-90	97.09	50S ribosomal protein L14 [Cucumis melo var. makuwa]	[more]
XP_022728609.1	2.4e-89	89.36	uncharacterized protein LOC111284164 [Durio zibethinus] >XP_022732752.1 uncharac...	[more]
KAF3449786.1	4.6e-88	89.42	hypothetical protein FNV43_RR05864 [Rhamnella rubrinervis]	[more]
XP_034910603.1	1.0e-87	88.83	50S ribosomal protein L14, chloroplastic [Populus alba]	[more]
KAD7117008.1	1.9e-86	90.50	hypothetical protein E3N88_04276 [Mikania micrantha]	[more]

BLAST of CaUC04G067570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WKP4	1.6e-43	89.52	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
Q4VZN1	6.1e-43	98.80	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=...	[more]
A0ZZ72	1.4e-42	96.39	50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl1...	[more]
Q2L940	1.4e-42	96.39	50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ...	[more]
B1NWI7	1.4e-42	96.39	50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P...	[more]

BLAST of CaUC04G067570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ11	3.1e-90	97.09	50S ribosomal protein L14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6P5XJN5	1.2e-89	89.36	30S ribosomal protein S3, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC11128...	[more]
A0A5N6PW49	9.4e-87	90.50	Ribosomal_L16 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_...	[more]
A0A385G255	6.1e-86	91.33	Ribosomal protein L14 OS=Ammopiptanthus mongolicus OX=126911 GN=rpl14 PE=3 SV=1	[more]
A0A394DIF1	7.9e-86	86.24	Ribosomal_L16 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tanj...	[more]

BLAST of CaUC04G067570 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00780.1	1.4e-42	94.38	ribosomal protein L14	[more]
ATCG00790.1	2.6e-41	91.57	ribosomal protein L16	[more]
AT2G28830.1	1.4e-26	71.95	PLANT U-BOX 12	[more]
ATMG00080.1	5.5e-15	44.32	ribosomal protein L16	[more]
AT5G46160.1	1.4e-13	35.00	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 42..71 score: 67.87 coord: 8..20 score: 47.85 coord: 26..37 score: 71.5 coord: 72..101 score: 28.53
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..83 e-value: 6.1E-38 score: 127.8
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 80..189 e-value: 8.7E-39 score: 144.8
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 84..177 e-value: 3.7E-34 score: 117.3
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 83..176
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 60..207 score: 18.762848
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..84 e-value: 2.6E-30 score: 105.1
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 7..83 e-value: 6.88438E-38 score: 126.067
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 84..190 e-value: 5.8E-36 score: 121.0
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 83..189 e-value: 8.1E-37 score: 127.9
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 83..173
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..82 e-value: 5.7E-39 score: 135.8
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..84
None	No IPR available	PANTHER	PTHR11761:SF28	RIBOSOMAL PROTEIN L14B/L23E-RELATED	coord: 83..176
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 43..54
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 132..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G067570.1	CaUC04G067570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome