CaUC04G067460 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G067460
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S11, chloroplastic
Location	Ciama_Chr04: 2646108 .. 2647034 (+)
RNA-Seq Expression	CaUC04G067460
Synteny	CaUC04G067460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACNNNNNNNNNNAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSEEPRFQMNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Homology

[Close]

BLAST of CaUC04G067460 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 7.8e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 119 MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 178
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 179 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 238
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 239 HIVRGTLDAVGVKDRQQGRSSAL 262
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CaUC04G067460 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 119 MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 178
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 179 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 238
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

Query: 239 HIVRGTLDAVGVKDRQQGRSSAL 262
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CaUC04G067460 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-67
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 119 MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 178
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 179 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 238
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP VRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRY 120

Query: 239 HIVRGTLDAVGVKDRQQGRSSAL 262
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CaUC04G067460 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 252.3 bits (643), Expect = 4.6e-63
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of CaUC04G067460 vs. NCBI nr
Match: KAF8091090.1 (hypothetical protein N665_0454s0031, partial [Sinapis alba])

HSP 1 Score: 245.0 bits (624), Expect = 7.3e-61
Identity = 126/142 (88.73%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +ENVTE + VTLRDG+EEGRRF+NEE+DPMTSKELNEEPYE         SGSKGDLSVN
Sbjct: 6   HENVTEFILVTLRDGVEEGRRFANEERDPMTSKELNEEPYE---------SGSKGDLSVN 65

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH
Sbjct: 66  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 125

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 126 IVRGTLDAVGVKDRQQGRSSAL 138

[Close]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRS
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot
Match: Q0ZIY6 (30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.4e-53
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIPRIGSRRNGRI SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MAKPIPRIGSRRNGRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           F+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRS
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-53
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-53
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot
Match: Q0G9S9 (30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.7e-52
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPRIGSR+NGRI SRK+TRRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MAKTIPRIGSRKNGRIGSRKNTRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRS
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.8e-71
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 119 MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 178
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 179 NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 238
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 239 HIVRGTLDAVGVKDRQQGRSSAL 262
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 127/142 (89.44%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL
Match: U5CU38 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 120 NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 179
           +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENATELVLVTPRDGVEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 180 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 239
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 240 IVRGTLDAVGVKDRQQGRSSAL 262
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of CaUC04G067460 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 198.0 bits (502), Expect = 9.6e-51
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS 113
           F+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRS
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRS 112

[Close]

BLAST of CaUC04G067460 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 182 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 241
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 242 RGTLDAVGVKDRQQGRS 259
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G067460 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 182 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 241
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 242 RGTLDAVGVKDRQQGRS 259
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G067460 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 182 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 241
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 242 RGTLDAVGVKDRQQGRS 259
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CaUC04G067460 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-22
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 156 EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 215
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 216 NLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 259
           N QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 73  NSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of CaUC04G067460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	7.8e-71	99.30	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038896566.1	1.2e-68	96.50	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	1.8e-67	95.80	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RWR98012.1	4.6e-63	92.96	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]
KAF8091090.1	7.3e-61	88.73	hypothetical protein N665_0454s0031, partial [Sinapis alba]	[more]

BLAST of CaUC04G067460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK2	1.1e-54	99.11	30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=...	[more]
Q0ZIY6	3.4e-53	95.54	30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=...	[more]
A0ZZ68	4.5e-53	95.54	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L937	4.5e-53	95.54	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ...	[more]
Q0G9S9	1.7e-52	94.64	30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 ...	[more]

BLAST of CaUC04G067460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	3.8e-71	99.30	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A3S3NSS0	2.2e-63	92.96	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	1.0e-60	90.14	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5I9	1.8e-60	89.44	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
U5CU38	1.3e-58	87.32	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290...	[more]

BLAST of CaUC04G067460 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	9.6e-51	91.96	ribosomal protein S11	[more]
ATCG00065.1	2.4e-38	100.00	ribosomal protein S12A	[more]
ATCG01230.1	2.4e-38	100.00	ribosomal protein S12B	[more]
ATCG00905.1	2.4e-38	100.00	ribosomal protein S12C	[more]
AT2G07675.1	1.1e-22	51.46	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 185..200 score: 91.32 coord: 237..253 score: 64.3 coord: 253..261 score: 32.37 coord: 201..220 score: 75.14 coord: 220..237 score: 88.58
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 176..256 e-value: 2.3E-29 score: 101.3
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 186..193
None	No IPR available	GENE3D	2.40.50.140		coord: 132..260 e-value: 1.3E-45 score: 156.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 1..127
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 24..113
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..113 e-value: 2.1E-35 score: 121.4
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..127
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 11..142 score: 23.530115
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 170..258 e-value: 1.0E-45 score: 152.6
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 182..253 e-value: 4.81126E-51 score: 160.762
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 13..131 e-value: 5.1E-33 score: 116.0
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 178..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G067460.1	CaUC04G067460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome