CaUC03G066900 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G066900
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPre-rRNA-processing protein ESF2
LocationCiama_Chr03: 32739075 .. 32739731 (-)
RNA-Seq ExpressionCaUC03G066900
SyntenyCaUC03G066900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACCAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAAATCGATGCTTTGGAGCTGGAAGCCGAGAGGGATGGTATAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATACGACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAGTCCGGTGGTGACATAAAAAGACGAGAAAAATCTTACCAAACTTGAGAGGGTAGCAGAAACCAGTGGAGGTGGGTTTTGGTGCAGATGGACATGAAACTCATAAAACTTGAGGTGAGAAACAAGAGGGATCCAAACCCCAAAGTTCACAAACCCTAACTGCCCCAAGCAAAAGAACCAGAACTCTGATATCATGCACTCAGTGTCGGAAAAAAACTCAATTGGATTTTAGATTCGAGTCACATATATATAGGTGTACATAAATTAAGAATTGAATCATTACAATAAAGGACAGCTAGACATGATAGTGGATATTATAATAACACCATGTATGCTTATATATGTTGAATTCTAATGTATAGAATAAGTGAGGAGTTCTCTCGTATTGCCGTCTAA

mRNA sequence

ATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACCAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAAATCGATGCTTTGGAGCTGGAAGCCGAGAGGGATGGTATAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATACGACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAAATAAGTGAGGAGTTCTCTCGTATTGCCGTCTAA

Coding sequence (CDS)

ATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACCAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAAATCGATGCTTTGGAGCTGGAAGCCGAGAGGGATGGTATAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATACGACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAAATAAGTGAGGAGTTCTCTCGTATTGCCGTCTAA

Protein sequence

MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAERDGIKGIFVDLIRKESISWLHVWLTYDSCQTLGFFKLKDGLPLEISEEFSRIAV
Homology
BLAST of CaUC03G066900 vs. NCBI nr
Match: TYK04731.1 (UHRF1-binding protein 1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAERDGIKGIF 60
          MGKLR L+GN++V +R+VFGD++ RKKEIL R+EEI  LE        L  ER+ +K +F
Sbjct: 2  MGKLRRLQGNLKVWNRDVFGDIRLRKKEILGRIEEIHCLELGGPLERSLRVEREDLKRVF 61

Query: 61 VDLIRKESISWLH----VWLTYDSCQTLGFFKL 82
          V+LIRKE++SW       W+    C T  F ++
Sbjct: 62 VELIRKENVSWNRKAKIKWVKEGDCNTSFFHRV 94

BLAST of CaUC03G066900 vs. NCBI nr
Match: KAA0057384.1 (hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK30082.1 hypothetical protein E5676_scaffold216G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-08
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELE--------AERDGIKGIF 60
           M KLRALK  +RV + EVFGD++ + KEI+ R+E+IDA EL+         ERD +K  F
Sbjct: 30  MEKLRALKIKLRVWNNEVFGDIQVKMKEIIKRIEKIDAFELDVPSDGSLKGERDCLKEDF 89

Query: 61  VDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL 86
            ++I+ E+ISW       W    +C T  F++  +G+
Sbjct: 90  TEVIKNENISWNKKAKVKWAKVGACSTGFFYRAANGI 126

BLAST of CaUC03G066900 vs. NCBI nr
Match: KAA0037601.1 (pre-rRNA-processing protein ESF2 [Cucumis melo var. makuwa] >TYK09343.1 pre-rRNA-processing protein ESF2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAERDGIKGIF 60
           MG LRALKGN RV +REVF +V TRKKEI A +E+        +  +  + ER+ +KG F
Sbjct: 174 MGNLRALKGNCRVWNREVFENVNTRKKEITAGIEDTMSWSWKILWIVLWKGERNVLKGEF 233

Query: 61  VDLIRKESISW 64
            DLIRKESISW
Sbjct: 234 ADLIRKESISW 244

BLAST of CaUC03G066900 vs. NCBI nr
Match: TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEA--------ERDGIKGIF 60
           M KLRAL   +R  +R+VFGD++ +KKE++AR+ EIDALELE         ER   KG  
Sbjct: 409 MDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEERVSSKGDL 468

Query: 61  VDLIRKESISW 64
            ++IRKE++SW
Sbjct: 469 AEMIRKENVSW 479

BLAST of CaUC03G066900 vs. NCBI nr
Match: KAA0031794.1 (hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAERD-GIKG 51
           M KLRALKGN++V SRE F +++T+KK I+AR++EID LELE   D  +KG
Sbjct: 227 MEKLRALKGNLKVWSREAFRNIRTKKKNIIARIDEIDTLELEGPLDSSLKG 277

BLAST of CaUC03G066900 vs. ExPASy TrEMBL
Match: A0A5D3BYG6 (UHRF1-binding protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00240 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.7e-12
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAERDGIKGIF 60
          MGKLR L+GN++V +R+VFGD++ RKKEIL R+EEI  LE        L  ER+ +K +F
Sbjct: 2  MGKLRRLQGNLKVWNRDVFGDIRLRKKEILGRIEEIHCLELGGPLERSLRVEREDLKRVF 61

Query: 61 VDLIRKESISWLH----VWLTYDSCQTLGFFKL 82
          V+LIRKE++SW       W+    C T  F ++
Sbjct: 62 VELIRKENVSWNRKAKIKWVKEGDCNTSFFHRV 94

BLAST of CaUC03G066900 vs. ExPASy TrEMBL
Match: A0A5A7UQK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00550 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELE--------AERDGIKGIF 60
           M KLRALK  +RV + EVFGD++ + KEI+ R+E+IDA EL+         ERD +K  F
Sbjct: 30  MEKLRALKIKLRVWNNEVFGDIQVKMKEIIKRIEKIDAFELDVPSDGSLKGERDCLKEDF 89

Query: 61  VDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL 86
            ++I+ E+ISW       W    +C T  F++  +G+
Sbjct: 90  TEVIKNENISWNKKAKVKWAKVGACSTGFFYRAANGI 126

BLAST of CaUC03G066900 vs. ExPASy TrEMBL
Match: A0A5A7T7P5 (Pre-rRNA-processing protein ESF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00240 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAERDGIKGIF 60
           MG LRALKGN RV +REVF +V TRKKEI A +E+        +  +  + ER+ +KG F
Sbjct: 174 MGNLRALKGNCRVWNREVFENVNTRKKEITAGIEDTMSWSWKILWIVLWKGERNVLKGEF 233

Query: 61  VDLIRKESISW 64
            DLIRKESISW
Sbjct: 234 ADLIRKESISW 244

BLAST of CaUC03G066900 vs. ExPASy TrEMBL
Match: A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEA--------ERDGIKGIF 60
           M KLRAL   +R  +R+VFGD++ +KKE++AR+ EIDALELE         ER   KG  
Sbjct: 409 MDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEERVSSKGDL 468

Query: 61  VDLIRKESISW 64
            ++IRKE++SW
Sbjct: 469 AEMIRKENVSW 479

BLAST of CaUC03G066900 vs. ExPASy TrEMBL
Match: A0A5A7SKV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00350 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-05
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 1   MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAERD-GIKG 51
           M KLRALKGN++V SRE F +++T+KK I+AR++EID LELE   D  +KG
Sbjct: 227 MEKLRALKGNLKVWSREAFRNIRTKKKNIIARIDEIDTLELEGPLDSSLKG 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK04731.12.0e-1146.24UHRF1-binding protein 1-like protein [Cucumis melo var. makuwa][more]
KAA0057384.16.0e-0840.21hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK300... [more]
KAA0037601.13.0e-0754.93pre-rRNA-processing protein ESF2 [Cucumis melo var. makuwa] >TYK09343.1 pre-rRNA... [more]
TYK03178.13.0e-0749.30hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa][more]
KAA0031794.11.1e-0458.82hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BYG69.7e-1246.24UHRF1-binding protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UQK02.9e-0840.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7P51.4e-0754.93Pre-rRNA-processing protein ESF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3BW321.4e-0749.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SKV15.1e-0558.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G066900.1CaUC03G066900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane