CaUC03G066680 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G066680
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein transport protein Sec24-like
Location	Ciama_Chr03: 32490183 .. 32492641 (-)
RNA-Seq Expression	CaUC03G066680
Synteny	CaUC03G066680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGCGGCAATAGAACCCATGTGCACTGAAAATCTTGCTCACTATAACTTTCCTACTAAACTTGCTGCCACTCAGACCACGTCACCCTTTTCAACCTCTGGTCTTATAGTTGAATCAAACACCATTTGTTCCAGACCTGCCTCTCCTGCTATGCCCCTAAACACAATGCCTTTTCCTCTATCTTCTAGTCCTACAGTTACATCAGGGTGTCGTGGGTTTAGACTTGTGCTACTAGGTAGGTTCTCTGATTCATCTATTATACCACCACCATATCAAATGTCTCAGCAACTGCTGGATATTTCTAGCGTTTTCTAGCCCCACAATTTACCCACCATCCCAACCACCTCCTCACAAATTCCATCAATGGGGCAACCCCCTGCAACTTCCCCACTTTCCTTTAACTAGCAAAGTTGGATTGCTTCCGTGCATATACAAATAGTTTGTACAAGATTGAACCACACAATAATTAATCTCTCTTTTTAAATCAATTAATGAAGAGATTTATATTTCATAGGATGATCATATGCGACTCGAAGTGAGTTATGAACTCCTGCCTGTGAGGGGCTGTCCTTTGATTTGTATGAGTGAAAGTGGCTTGAGTCACCGACTCAATATGCCTACTATTTTGGGAGATTTGACCAAATAGTGGTGTCGGGAATGTAATTTCTCAAGATGGAATTCACTTATTCCCATATAGGAAAAATAGATGAGTAGTTCCTTAAGTACTGACTCTAAGACTTGAACAACAAAACCTACCCTCTCATTAGCTTGAAATAGACTTGATTTATGGTTTAACCATAAATAAATTGTTCATTAGAGTACCAATGGTACTTAAGAAGACAACAAACTTTTTACCCCGCTATATTTACGAACTCGTGAATGATCAACTTGCTTGCAATGATTATATCCACTGATGCAATTTGTCATGCAACGCATAAAAGCGCAACTATAAGTATATAGTATTTTGCCCTATAGTTAATGAATGAAGATTAATTAATTAAAAAGTAATTAGTCTTGTATAATTAGAGATTATAATCTATAGGTTTATAAGATCCCCCTACTAGCTCACAATGGACAAAGATCAACGATATTAAAAGAAAATTTGAAACGTTCAAATTTATTGAATGAAAAATATATTTATAATACAAATTAATATAAGTATTAATGTATTATGATACATTAATATAAAATTAATTTGGATAAGATTTAAATTTAAAACTTTATTATATGAGGTAATTAATGTATTTGAATATAATTAAAAAATAATAATAATTTTTTAAATAAGATTTAAATTAAACTCTATAATATGAGATAATTAATGTATTTGAATATGATACAAATAATTAATAATTTTAATACAAGATATTAAAATGGATAATTATAATTAATTAATTTTTATACTAATTAGGTCCTATAAATAGGACATTGTAGGGAACGATAGAGTGATTTTATAGTTCATGTATCTTATAAAAAATTCTTCCAAAATACATAAAAACGTTCTCTAGTTTTCTTTTTCATTTACGAAAGCTTTTAGCGTTTCTACATAGGTACGATTTGACTGTGTTAATTATCATTGGCACATCACACAAAATTGATTCTATTAGATTTGTGATTCAAATTTGTGGATTATAAAGCAATTAGTTTTTTAAGATTTCATATTCGTCAAAATAACCTATTAAGTACAAAATTGAACGTTTAGGACCTACATATTAAACCCAATAGAAACTAACTTGCTAAAATGAGTAAATCTAAAGTGCTCGTATTATGAACTTCAAAATTAGAAGTTTGATCTCCCACCCCATATATTGTGAAAAGAAAAAAGCACATACCTCCAACTTAATAAATTTCATATTTTTTCTTTGGTAAAATATCAACTTAATTAATAATAACGGTTGTTTTCAAATATAGGAGAATGAACAAAAATATTTACAAATGTAACAAATTTTTCCTGTCTATTAACCGTGATAGACTACTATATATGTCATAGACACATATAGTAGTCTATTGTAATTTATCGCAGATAAACGATAATATTTTGCTATTATCTATGTCACAATAGACATAATATCTATCGCCATCTATCGCAGTCTGACTCTTTATTTCACTATTAATTAGTGAATATTTTGAGCAGTTATCTTATTTAAGATAATTTCTTAAGAATTTTTGCCGTCGTGAACTTAGAATAAAGTTATTTATGTTATTCTTAGCAATTTCCTAAGGCCAAGGGTATGGTTTTTGGGGGTAAAAATTCGAGGGAATTGACTTCAATTAATTTTGTGAATGAATCGGAAGGGAGAGGCGTTGGCTTTCTAAGATCACTGATCTCTCCTCTCCTCTTCTCTCTCTCCTCTCTTCTCTCCCTCTCACTTGCATTGCAGGCTTTCGTTGTTTCCCACTTCGGATCCGCCCAGCTCTTCGATCCCACTGTGTTCGTTACTGCTTGCAGACCCTCCTACACA

mRNA sequence

AGTGCGGCAATAGAACCCATGTGCACTGAAAATCTTGCTCACTATAACTTTCCTACTAAACTTGCTGCCACTCAGACCACGTCACCCTTTTCAACCTCTGGTCTTATAGTTGAATCAAACACCATTTGTTCCAGACCTGCCTCTCCTGCTATGCCCCTAAACACAATGCCTTTTCCTCTATCTTCTAGTCCTACAGTTACATCAGGGTGTCGTGGGTTTAGACTTGTGCTACTAGGTAGGTTCTCTGATTCATCTATTATACCACCACCATATCAAATGTCTCAGCAACTGCTGGATATTTCTAGCCAATTTCCTAAGGCCAAGGGTATGGTTTTTGGGGGTAAAAATTCGAGGGAATTGACTTCAATTAATTTTGTGAATGAATCGGAAGGGAGAGGCGTTGGCTTTCTAAGATCACTGATCTCTCCTCTCCTCTTCTCTCTCTCCTCTCTTCTCTCCCTCTCACTTGCATTGCAGGCTTTCGTTGTTTCCCACTTCGGATCCGCCCAGCTCTTCGATCCCACTGTGTTCGTTACTGCTTGCAGACCCTCCTACACA

Coding sequence (CDS)

AGTGCGGCAATAGAACCCATGTGCACTGAAAATCTTGCTCACTATAACTTTCCTACTAAACTTGCTGCCACTCAGACCACGTCACCCTTTTCAACCTCTGGTCTTATAGTTGAATCAAACACCATTTGTTCCAGACCTGCCTCTCCTGCTATGCCCCTAAACACAATGCCTTTTCCTCTATCTTCTAGTCCTACAGTTACATCAGGGTGTCGTGGGTTTAGACTTGTGCTACTAGGTAGGTTCTCTGATTCATCTATTATACCACCACCATATCAAATGTCTCAGCAACTGCTGGATATTTCTAGCCAATTTCCTAAGGCCAAGGGTATGGTTTTTGGGGGTAAAAATTCGAGGGAATTGACTTCAATTAATTTTGTGAATGAATCGGAAGGGAGAGGCGTTGGCTTTCTAAGATCACTGATCTCTCCTCTCCTCTTCTCTCTCTCCTCTCTTCTCTCCCTCTCACTTGCATTGCAGGCTTTCGTTGTTTCCCACTTCGGATCCGCCCAGCTCTTCGATCCCACTGTGTTCGTTACTGCTTGCAGACCCTCCTACACA

Protein sequence

SAAIEPMCTENLAHYNFPTKLAATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLSSSPTVTSGCRGFRLVLLGRFSDSSIIPPPYQMSQQLLDISSQFPKAKGMVFGGKNSRELTSINFVNESEGRGVGFLRSLISPLLFSLSSLLSLSLALQAFVVSHFGSAQLFDPTVFVTACRPSYT

Homology

[Close]

BLAST of CaUC03G066680 vs. NCBI nr
Match: XP_004135758.1 (protein transport protein Sec24-like At3g07100 [Cucumis sativus] >KGN65983.1 hypothetical protein Csa_007069 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-16
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQTTSPFS+SG +V S+T   RP +P MP NTMPFP S
Sbjct: 1  MGTENPAHPNFPTRPAGTPFTATQTTSPFSSSGPVVGSDTTRFRPGAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V SG  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGSGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. NCBI nr
Match: XP_008450519.1 (PREDICTED: protein transport protein Sec24-like At3g07100 isoform X1 [Cucumis melo] >XP_016900966.1 PREDICTED: protein transport protein Sec24-like At3g07100 isoform X1 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. NCBI nr
Match: XP_016900967.1 (PREDICTED: protein transport protein Sec24-like At3g07100 isoform X2 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. NCBI nr
Match: KAA0050961.1 (protein transport protein Sec24-like [Cucumis melo var. makuwa] >TYK10308.1 protein transport protein Sec24-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. NCBI nr
Match: XP_038878991.1 (protein transport protein Sec24-like At3g07100 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-15
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTK-----LAATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+      AATQTTSPFS+SG +V S+    RPASPAMP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAATPFAATQTTSPFSSSGPVVGSDNTRFRPASPAMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V S   GFR +   R+SD S+ PPP
Sbjct: 61 SGPAVGSTVPGFRPMQPSRYSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL
Match: A0A0A0LW45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560670 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-16
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQTTSPFS+SG +V S+T   RP +P MP NTMPFP S
Sbjct: 1  MGTENPAHPNFPTRPAGTPFTATQTTSPFSSSGPVVGSDTTRFRPGAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V SG  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGSGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL
Match: A0A1S4DYA6 (protein transport protein Sec24-like At3g07100 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492101 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL
Match: A0A5A7UBK7 (Protein transport protein Sec24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004610 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL
Match: A0A1S4DYB0 (protein transport protein Sec24-like At3g07100 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492101 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 7  MCTENLAHYNFPTKLA-----ATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
          M TEN AH NFPT+ A     ATQT SPFS+SG +V S+T   RPA+P MP NTMPFP S
Sbjct: 1  MGTENPAHQNFPTRPAGTPFTATQTASPFSSSGPVVGSDTTRFRPAAPVMPPNTMPFPPS 60

Query: 67 SSPTVTSGCRGFRLVLLGRFSDSSIIPPP 91
          S P V  G  GFR +  GRFSD S+ PPP
Sbjct: 61 SGPAVGPGVPGFRPMQPGRFSDPSVPPPP 89

[Close]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL
Match: A0A6J1HAI1 (protein transport protein Sec24-like At3g07100 OS=Cucurbita moschata OX=3662 GN=LOC111462103 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 54/104 (51.92%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 7   MCTENLAHYNFP-----TKLAATQTTSPFSTSGLIVESNTICSRPASPAMPLNTMPFPLS 66
           M TEN A  NFP     T   ATQTTSPFS+SG +V S+    RPASPAMP  TMPFP S
Sbjct: 1   MGTENPAQQNFPARPAGTPFTATQTTSPFSSSGPVVGSDATRFRPASPAMPPYTMPFPPS 60

Query: 67  SSPTVTSGCRGFRLVLLGRFSDSSIIPPPYQMSQQLLDISSQFP 106
           S+P V SG  GFR +   RFSD S+ PPP        +   +FP
Sbjct: 61  SAPAVGSGVPGFRPMQPSRFSDPSVPPPPTSSVPAATESFQRFP 104

The following BLAST results are available for this feature:

BLAST of CaUC03G066680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135758.1	5.1e-16	60.67	protein transport protein Sec24-like At3g07100 [Cucumis sativus] >KGN65983.1 hyp...	[more]
XP_008450519.1	1.5e-15	59.55	PREDICTED: protein transport protein Sec24-like At3g07100 isoform X1 [Cucumis me...	[more]
XP_016900967.1	1.5e-15	59.55	PREDICTED: protein transport protein Sec24-like At3g07100 isoform X2 [Cucumis me...	[more]
KAA0050961.1	1.5e-15	59.55	protein transport protein Sec24-like [Cucumis melo var. makuwa] >TYK10308.1 prot...	[more]
XP_038878991.1	2.5e-15	59.55	protein transport protein Sec24-like At3g07100 [Benincasa hispida]	[more]

BLAST of CaUC03G066680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G066680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW45	2.5e-16	60.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560670 PE=3 SV=1	[more]
A0A1S4DYA6	7.2e-16	59.55	protein transport protein Sec24-like At3g07100 isoform X1 OS=Cucumis melo OX=365...	[more]
A0A5A7UBK7	7.2e-16	59.55	Protein transport protein Sec24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4DYB0	7.2e-16	59.55	protein transport protein Sec24-like At3g07100 isoform X2 OS=Cucumis melo OX=365...	[more]
A0A6J1HAI1	1.0e-14	51.92	protein transport protein Sec24-like At3g07100 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CaUC03G066680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G066680.1	CaUC03G066680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006996	organelle organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005488	binding