CaUC03G066650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G066650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	C3H1-type domain-containing protein
Location	Ciama_Chr03: 32457463 .. 32458376 (-)
RNA-Seq Expression	CaUC03G066650
Synteny	CaUC03G066650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCCGGGCTTTTGTAATCGATTCCTCACTACGGTAATTCTTCTCTTCCCTTTGCATCGCATCACATCACATCGCATCGCTTCGCTTCCATTTTCTTTTAACCTAATTTTTGCTTCTCCTTCGCCTTCTTTTCAAAGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACGTACAACTCCACTTCCCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAACTTGAACTGAACTCGTTGCTGCGTATTTTGATGCTTGAAACCATCGGACAGCTTTATGTGTTCCACACTTCATTTGTTTATTATTTACCAACAGCACTGCATTTTTTCATTCATAGGAACAATCGACCTATTCCCATCTCCATTCCTCTTTCATTGACCCATTTTGAACAGGACCTTTGAACTTTTACGTAGTGCTTGTTATATGAATCTGCAAATCATTCTGAGTTATGAACAGCACCCATCATTGTTTACGAACCAACCTATAAATCATTCTGAGTTCTACATATTATTTGAATCATTTAGTTTTAAGGTTTCTGTCGCTTACATTTGATAATCTTTACCTTCAGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

mRNA sequence

ATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCCGGGCTTTTGTAATCGATTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACGTACAACTCCACTTCCCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Coding sequence (CDS)

ATGCCACTGGGAAAATATTATTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGAAAACGCCATCTTCAAAGCCTTTCCCATCAGAAAGCCAAAGCTCTCTGGTTCGACTCCTTCAATCAACCTTTCTCTGATTCCTTCCACTTCCGGCCGGGCTTTTGTAATCGATTCCTCACTACGGGTTTCTGCCAGTACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATACTACGTACAACTCCACTTCCCACCCCATTGCAAATATTCCGGAAAATAATCAACCCCCAAATATTCCGGTGAATCCATTCGCAGACGGCAGCTCTTTCACTGGTAGTTTAGTTAGCGATAGCATGGGAAGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCACTCCCTTTTGTTGATTGGGGATAA

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFRPGFCNRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

[Close]

BLAST of CaUC03G066650 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 140/156 (89.74%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFH-FRPGFCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF  P    FH FRPGFCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDPNQPLFHAFRPGFCNR 60

Query: 61  FLTTGFCQYGDSCKYFHPN---NNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTG 120
           FLTTGFCQYGDSCKYFHPN   NNN T+NSTSHPIA  PENNQPPN PVN FADGSSFTG
Sbjct: 61  FLTTGFCQYGDSCKYFHPNNNYNNNNTHNSTSHPIAGFPENNQPPNFPVNQFADGSSFTG 120

Query: 121 SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 156

[Close]

BLAST of CaUC03G066650 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFRP  C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHP--NNNNTTYNSTSHPIANIPENNQPPNIPVNPFADG-SSF 120
           NRFL+TGFCQYGDSCKYFHP  N+N+ T+NS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CaUC03G066650 vs. NCBI nr
Match: XP_004135569.1 (zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypothetical protein Csa_007019 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 129/157 (82.17%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS---FNQPFSDSFHFRPGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDS   FNQ F  SFHFRP  C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTYNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  TYNS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CaUC03G066650 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 124/155 (80.00%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQPFSD+F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTR--VC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 120
           NRFLTTGFCQYGDSCKYFH  NN     S+S PIA  PENNQ PN+PVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKNN--LQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGS 120

Query: 121 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CaUC03G066650 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 123/155 (79.35%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF   NQP S +F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTR--LC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 120
           NRFLTTGFCQYGDSC YFH NNN     S+SHPIA  PENNQ PNIPVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNNN--PQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGS 120

Query: 121 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-38
Identity = 86/174 (49.43%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS----------------FNQ 60
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+                 +Q
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQ 60

Query: 61  PFSDSFHFRPGFCNRFLTTGFCQYGDSCKYFHP-----NNNNTTYNSTSHPIANIPE-NN 120
           P + +     G C  F+ TG C++GDSC+YFHP     N         S P+A       
Sbjct: 61  PGAAAI----GVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQG 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
             PN      ADGSSF+G+++    G TSWGNLPPSL PPPEGGYPP PFVDWG
Sbjct: 121 SQPNFVGYQAADGSSFSGNILG---GHTSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRPGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F    +   D  + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTYNSTS-----------HPIANIPE-------NNQPPNI 124
            TG C +G +C++ H +  +    S               +A +PE         +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPLDVAELPEVCLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-14
Identity = 52/169 (30.77%), Postives = 78/169 (46.15%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRPGFCNRFL 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  TTGFCQYGDSCKYFHPNNNNTTYNST---------SHPI--ANIPENN-------QPPNI 124
            TG C +G +C++ H +  +    S            P+  A +PE +       +   +
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRL 123

Query: 125 PVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
              P +       ++    +G      LPPSL  PP GG+  L  V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 5  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFS---DSFHFRPGFCNRFL 64
          +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F    +   D  + RP  C +FL
Sbjct: 4  RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65 TTGFCQYGDSCKYFH 77
           TG C +G +C++ H
Sbjct: 64 LTGQCDFGSNCRFSH 76

[Close]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-11
Identity = 51/186 (27.42%), Postives = 75/186 (40.32%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSDSFHFR-PGFCNRFLTT 64
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F    +     R    C +F+ T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCQYGDSCKYFH----------------------PNNNNTTYNS--------------- 124
           G C +G SC++ H                      P+ + ++  S               
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 125 TSHPIANIPENNQPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPL 153
           TS  +  + E     NI + P+                  S  +LPPSL PPP GG+   
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYL----------------LSIPDLPPSLHPPPAGGWRVT 173

[Close]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.8e-69
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFRP  C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHP--NNNNTTYNSTSHPIANIPENNQPPNIPVNPFADG-SSF 120
           NRFL+TGFCQYGDSCKYFHP  N+N+ T+NS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL
Match: A0A0A0M1B0 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.8e-69
Identity = 129/157 (82.17%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS---FNQPFSDSFHFRPGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDS   FNQ F  SFHFRP  C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNN-TTYNSTSHPIANIPENNQPPNIPVNPFADG-SSFT 120
           NRFL+TGFCQYGDSCKYFHPNNNN  TYNS+S+P+A  PEN QPPN+PVN F DG SS T
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           GSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.8e-69
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQ F  SFHFRP  C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLTTGFCQYGDSCKYFHP--NNNNTTYNSTSHPIANIPENNQPPNIPVNPFADG-SSF 120
           NRFL+TGFCQYGDSCKYFHP  N+N+ T+NS+SHPIA  PENNQPPN+P N F DG SS 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           TGSLVSD +G TSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLG-TSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.3e-62
Identity = 124/155 (80.00%), Postives = 129/155 (83.23%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF   NQPFSD+F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTR--VC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 120
           NRFLTTGFCQYGDSCKYFH  NN     S+S PIA  PENNQ PN+PVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKNN--LQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGS 120

Query: 121 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.0e-61
Identity = 123/155 (79.35%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF---NQPFSDSFHFRPGFC 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF   NQP S +F  R   C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTR--LC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 120
           NRFLTTGFCQYGDSC YFH NNN     S+SHPIA  PENNQ PNIPVN F +GSS TGS
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNNN--PQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGS 120

Query: 121 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           L  D + RTSWGNLPPSLMPPPEGGYPPLPFVDWG
Sbjct: 121 L--DRL-RTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CaUC03G066650 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-37
Identity = 79/155 (50.97%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRPGFC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S     G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFLTTGFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENNQPPNIPVNPFADGSSFTGS 120
           NRF+T+ FC +GDSC+YFHPNNN  +   T++    +   NQ           GS+    
Sbjct: 61  NRFITSNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLNQ-------QHIQGSTLNRD 120

Query: 121 LVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
            VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 FVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 147

[Close]

BLAST of CaUC03G066650 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-34
Identity = 79/174 (45.40%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFNQPFSD---SFHFRPGFC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S +    +   S     G C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFLTT-------------------GFCQYGDSCKYFHPNNNNTTYNSTSHPIANIPENN 120
           NRF+T+                    FC +GDSC+YFHPNNN  +   T++    +   N
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGSTGFTNNTQLRVDMLN 120

Query: 121 QPPNIPVNPFADGSSFTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 153
           Q           GS+     VS   G T W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 Q-------QHIQGSTLNRDFVSGRPG-TGWFDLPPSLKPPPEQGYPQLPFIDWG 166

The following BLAST results are available for this feature:

BLAST of CaUC03G066650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879279.1	7.2e-77	89.74	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]
XP_008450521.1	1.6e-68	82.28	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_004135569.1	1.6e-68	82.17	zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypot...	[more]
XP_022989487.1	1.9e-61	80.00	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_022931617.1	1.2e-60	79.35	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]

BLAST of CaUC03G066650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	1.8e-38	49.43	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2TA39	1.3e-15	31.36	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9CQR5	5.3e-14	30.77	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]
Q9UDW3	2.2e-12	42.67	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]
Q6AXL8	5.5e-11	27.42	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]

BLAST of CaUC03G066650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFN3	7.8e-69	82.28	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0M1B0	7.8e-69	82.17	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 P...	[more]
A0A1S3BQ25	7.8e-69	82.28	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1JFY8	9.3e-62	80.00	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1EU59	6.0e-61	79.35	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CaUC03G066650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	2.7e-37	50.97	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	8.1e-34	45.40	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 3..38 e-value: 1.2E-4 score: 31.4
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 53..78 e-value: 0.0066 score: 25.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 57..77 e-value: 1.8E-6 score: 27.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 52..79 score: 12.811992
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 5..36 e-value: 3.8E-9 score: 36.2
None	No IPR available	GENE3D	4.10.1000.10		coord: 50..108 e-value: 1.2E-5 score: 27.2
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..49 e-value: 1.8E-8 score: 36.3
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 1..152
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 4..46
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 50..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G066650.1	CaUC03G066650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding