CaUC03G066420 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G066420
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Exonuclease domain-containing protein
Location	Ciama_Chr03: 32092132 .. 32093910 (+)
RNA-Seq Expression	CaUC03G066420
Synteny	CaUC03G066420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGTGGAAAATAAATTCAACTTTTTTGTCTTTGACGTGATTTTGCTTGTTCTTTTGAGATCATTCGGAGCTCTTAACTTTGTTGTTTTGTTTATTATTCTGGTTTTCCTGTTTGATAATCAATGTGAAGAAATTAAAGTTCATCTCTTTTTGTTTCTTGGTCTGATTTGGTCTTATACATTGTTTGTCACCCCATTATCTACAGGTTGAAGAAAAGATTGCTTCCGATGCTGGATTTTCTCGGGTTTTCTGTCTAGATTTCCTCTTGTGTTGTAAATTCAAATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCAGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGATTTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGTATCAAAATGTTCGTTGTGGTCTCATTTCTCTTATATATTATCCATTCAGTTCAGTGCTTGTTATAGTCATTTATCAATCATACATATTCAGACTTTTCTTTTCTATGTTCATATAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGGTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGATATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAATCCTCCGGTTAGTTTTCCCTTTTCACATATTATCTTGCGCTAGTTTCTCTGTGAATAAAAGGATTGATGTGATGTAATGTAATATTGTTGGCAATATCATGATCAGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGCGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAGTGTCTTAAGTTATGTGCACAAATCAATCATAACATAGTGATCAAGCTGTGCTTTTGTTGTAATGCTATTTGCTAATTGTTGTAACCTCAGTTCATTCTTATTAGCAAAATGTTGGGCCATTTTATTTATGGTCAGCAGATGTGCTTGATGTCCATATTCTCCAAAAACTAGTGCCTGAATTGGGATGTCATGACATATAGTTTTGTTTTCTTCTTTGAATGGATACTGAGATAAAAGTTGTTTATGAAGAAATATGAAAGGAAGATCTGTGTTCTGTATTGA

mRNA sequence

TCGTGGAAAATAAATTCAACTTTTTTGTCTTTGACGTGATTTTGCTTGTTCTTTTGAGATCATTCGGAGCTCTTAACTTTGTTGTTTTGTTTATTATTCTGGTTTTCCTGTTTGATAATCAATGTGAAGAAATTAAAGTTCATCTCTTTTTGTTTCTTGGTCTGATTTGGTCTTATACATTGTTTGTCACCCCATTATCTACAGGTTGAAGAAAAGATTGCTTCCGATGCTGGATTTTCTCGGGTTTTCTGTCTAGATTTCCTCTTGTGTTGTAAATTCAAATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCAGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGATTTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGGTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGATATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAATCCTCCGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGCGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAGTGTCTTAAGTTATGTGCACAAATCAATCATAACATAGTGATCAAGCTGTGCTTTTGTTGTAATGCTATTTGCTAATTGTTGTAACCTCAGTTCATTCTTATTAGCAAAATGTTGGGCCATTTTATTTATGGTCAGCAGATGTGCTTGATGTCCATATTCTCCAAAAACTAGTGCCTGAATTGGGATGTCATGACATATAGTTTTGTTTTCTTCTTTGAATGGATACTGAGATAAAAGTTGTTTATGAAGAAATATGAAAGGAAGATCTGTGTTCTGTATTGA

Coding sequence (CDS)

ATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCAGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGATTTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGGTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGATATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAATCCTCCGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGCGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAG

Protein sequence

MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRLTFDLKLRIPDLIEGSFTALDLINKKKN

Homology

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BLAST of CaUC03G066420 vs. NCBI nr
Match: XP_038878496.1 (exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP_038878497.1 exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 596.7 bits (1537), Expect = 1.3e-166
Identity = 304/334 (91.02%), Postives = 314/334 (94.01%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MI APMCFSILR PKFGVPTLANLWRENFHPLNRN  HSSW++QLGFRIYNLEGGQNKRW
Sbjct: 1   MILAPMCFSILRFPKFGVPTLANLWRENFHPLNRNCYHSSWHDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
            RKS+TTKAGRKAKANPSSKPTNIRNEILEES+STSCTVSINKSEKSETQKLQYCDIQQ 
Sbjct: 61  IRKSMTTKAGRKAKANPSSKPTNIRNEILEESISTSCTVSINKSEKSETQKLQYCDIQQL 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           IIKNK+LARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV
Sbjct: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSR--QKPDGDVLLVAHNGRTFDVPFLVKEFS 240
           VHGITN MVSRPDVPRMKELIPILLQFV+SR  QKPDG VLLVAHN RTFDVPFL+KEFS
Sbjct: 181 VHGITNHMVSRPDVPRMKELIPILLQFVESRQKQKPDGYVLLVAHNARTFDVPFLLKEFS 240

Query: 241 RCSIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSL 300
           RCS DIPPNWRFFDSIPLARQLMKSSDSKITKI+LQALREYY I +VGSAHRAMSDV SL
Sbjct: 241 RCSFDIPPNWRFFDSIPLARQLMKSSDSKITKISLQALREYYDIQLVGSAHRAMSDVRSL 300

Query: 301 SLIFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           SLI QRLTF+LKL I DLIE SFTA DLINKKKN
Sbjct: 301 SLILQRLTFELKLGISDLIERSFTASDLINKKKN 334

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BLAST of CaUC03G066420 vs. NCBI nr
Match: KAG6590475.1 (Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024006.1 Exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 590.1 bits (1520), Expect = 1.2e-164
Identity = 294/332 (88.55%), Postives = 317/332 (95.48%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFRIYNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           I+K+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHN RTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

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BLAST of CaUC03G066420 vs. NCBI nr
Match: XP_022961373.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 588.2 bits (1515), Expect = 4.5e-164
Identity = 293/332 (88.25%), Postives = 316/332 (95.18%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFR YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           I+K+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHN RTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CaUC03G066420 vs. NCBI nr
Match: XP_023515555.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 587.8 bits (1514), Expect = 5.9e-164
Identity = 293/332 (88.25%), Postives = 315/332 (94.88%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFRIYNLEGGQNKRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCT+SINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTISINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           I K+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 ITKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHN RTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKI KI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKIKKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CaUC03G066420 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 585.5 bits (1508), Expect = 2.9e-163
Identity = 295/331 (89.12%), Postives = 313/331 (94.56%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITA MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFRIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVSINKSEK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           IIK+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQFVKSRQKPDG VLLVAHN R FDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKK 332
           I QRLTFDLKL IPDLIE SFT  DLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot
Match: Q682U6 (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.9e-63
Identity = 139/323 (43.03%), Postives = 203/323 (62.85%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGI 185
           DL++ +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHNG++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot
Match: Q895K2 (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-14
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 134 ITFDIETTGFSRNLDRIVEI-ALQDLSGGENSTFQTLINPECYIPNSVVH--GITNRMVS 193
           + FDIETTGFS   D+I+EI A++   G     + T +NPE  IP  ++   GI + MV 
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 194 RPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIPPNWRF 253
             D P+++E++P  + F++       D +LVAHN   FDV F+ K      I    N   
Sbjct: 474 --DAPKIEEVLPKFIDFIE-------DSILVAHNA-NFDVSFIKKNCKDFGIHF--NNPI 533

Query: 254 FDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRLTFDLK 311
            D+IPL + L      ++ +  L  + ++  IP++ + HRA+ D  +   I  +   DLK
Sbjct: 534 LDTIPLCKFLY----PELKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFEDLK 576

[Close]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot
Match: Q8XJR3 (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-11
Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 134 ITFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GITNRMVS 193
           + FDIETTGFS   D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495

Query: 194 RPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIPPNWR- 253
               P + E++P  ++FV       G+ +LVAHN   FDV F+ K      +D+    + 
Sbjct: 496 --GQPTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNL----MDMGKTLKN 555

Query: 254 -FFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSD 295
              D++PLAR L       + K+ L  + ++  I  + + HRA+ D
Sbjct: 556 PVMDTVPLARYLYPD----LKKVKLNLVAKHLGIS-LENHHRAVDD 582

[Close]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot
Match: Q4L5W6 (DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=polC PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-09
Identity = 52/190 (27.37%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 124 NKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH 183
           ++DL +  T + FD+ETTG S   D+I+E+A   +  GE    F+   NP   +  ++++
Sbjct: 414 DRDL-KEATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIIN 473

Query: 184 --GITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 243
              IT+ M++  D P ++E++    ++V       GD + VAHN  +FD+ F+   + R 
Sbjct: 474 LTHITDDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERL 533

Query: 244 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 303
               P      D++ L+R +    +++  K  L  L + Y + +    HRA+ D  S + 
Sbjct: 534 GFG-PSTNGVIDTLELSRTI----NTEYGKHGLNFLAKKYGVELT-QHHRAIYDTESTAY 586

Query: 304 IFQRLTFDLK 311
           IF ++   +K
Sbjct: 594 IFIKMVQQMK 586

[Close]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot
Match: Q5HPS7 (DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=polC PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-09
Identity = 49/185 (26.49%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 129 RPVTVITFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GIT 188
           +  T + FD+ETTG S   D+I+E+A   +  GE    F+   NP   +  ++++   IT
Sbjct: 418 KDATYVVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHIT 477

Query: 189 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIP 248
           + M++  D P ++E++    ++V       GD + VAHN  +FD+ F+   + R     P
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFG-P 537

Query: 249 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 308
                 D++ L+R +    +++  K  L  L + Y + +    HRA+ D  + + IF ++
Sbjct: 538 STNGVIDTLELSRTI----NTEYGKHGLNFLAKKYGVELT-QHHRAIYDTEATAYIFIKM 586

Query: 309 TFDLK 311
              +K
Sbjct: 598 VQQMK 586

[Close]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL
Match: A0A6J1HDU6 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461962 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.2e-164
Identity = 293/332 (88.25%), Postives = 316/332 (95.18%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFR YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           I+K+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHN RTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL
Match: A0A6J1HUD7 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467897 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.4e-163
Identity = 295/331 (89.12%), Postives = 313/331 (94.56%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MITA MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLGFRIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVSINKSEK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
           IIK+K+LARPVTVITFDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+V
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQFVKSRQKPDG VLLVAHN R FDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKK 332
           I QRLTFDLKL IPDLIE SFT  DLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL
Match: A0A6J1C1V8 (exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007515 PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.4e-155
Identity = 280/332 (84.34%), Postives = 299/332 (90.06%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWY+QL FRIYNLEGGQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K NPSSKP++IRNEILE SVSTSCTVSINK+EKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 IIKNKDLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180
             K K+L RPVTVI FDIETTGFSR  DRIVEIA QDLSGGENSTFQTLINPECYIPNS+
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMK+LIPILLQFV SRQKPDG +LLVAHN RTFDVPFL+ EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S DIP +W F D++ LARQLM SSDSK++KI+LQALREYYSIP+VGSAHRAMSDV SLSL
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFTA DLI K K+
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL
Match: A0A0A0LVY3 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 2.1e-143
Identity = 260/326 (79.75%), Postives = 284/326 (87.12%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WY+QL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           TTKAG KAK NPSSKPTNIRNEIL+ES+  SCTV+INKSEKSETQKLQYCDIQ TIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGIT 185
           + A  VTVITFDIETTGFSRNLDRIVEIA QDLSGGENSTFQTLINP+CYI NS +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIP 245
           NRMV  P VPRM+ELIPI+LQFVKSRQKP G VLLVAHN RTFDVPFL+ EFSR S+DIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 305
            NW FFD++ LARQLMK SDSKITKITLQAL EYY I + G AHRA+SDV  LS I QRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLRIPDLIEGSFTALDLINKKK 332
           TFDLKL I DL+E +FT LDLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL
Match: A0A0N9LRH7 (Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 4.7e-143
Identity = 260/326 (79.75%), Postives = 283/326 (86.81%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WY+QL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           TTKAG KAK NPSSKPTNIRNEIL+ESV  SCTV+INKSEKSETQKLQYCDIQ TIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGIT 185
           + A  VTVITFDIETTGFSRNLDRIVEIA QDLSGGENSTFQTLINP+CYI NS +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDIP 245
           NRMV  P VP M+ELIPI+LQFVKSRQKP G VLLVAHN RTFDVPFL+ EFSR S+DIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 305
            NW FFD++ LARQLMK SDSKITKITLQAL EYY I + G AHRA+SDV  LS I QRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLRIPDLIEGSFTALDLINKKK 332
           TFDLKL I DL+E +FT LDLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of CaUC03G066420 vs. TAIR 10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-64
Identity = 139/323 (43.03%), Postives = 203/323 (62.85%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGI 185
           DL++ +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHNG++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CaUC03G066420 vs. TAIR 10
Match: AT5G26940.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-64
Identity = 139/323 (43.03%), Postives = 203/323 (62.85%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGI 185
           DL++ +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHNG++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CaUC03G066420 vs. TAIR 10
Match: AT5G26940.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-64
Identity = 139/323 (43.03%), Postives = 203/323 (62.85%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGI 185
           DL++ +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHNG++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CaUC03G066420 vs. TAIR 10
Match: AT5G26940.4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.6e-64
Identity = 139/323 (43.03%), Postives = 203/323 (62.85%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGFRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 DLARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGI 185
           DL++ +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNGRTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHNG++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

The following BLAST results are available for this feature:

BLAST of CaUC03G066420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878496.1	1.3e-166	91.02	exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP...	[more]
KAG6590475.1	1.2e-164	88.55	Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_022961373.1	4.5e-164	88.25	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374...	[more]
XP_023515555.1	5.9e-164	88.25	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022968752.1	2.9e-163	89.12	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1...	[more]

BLAST of CaUC03G066420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682U6	7.9e-63	43.03	Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q895K2	6.8e-14	32.78	DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ...	[more]
Q8XJR3	3.2e-11	33.13	DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=...	[more]
Q4L5W6	2.3e-09	27.37	DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain JCSC1435) OX...	[more]
Q5HPS7	3.9e-09	26.49	DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain ATCC 35984 / ...	[more]

BLAST of CaUC03G066420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDU6	2.2e-164	88.25	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUD7	1.4e-163	89.12	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1C1V8	2.4e-155	84.34	exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LVY3	2.1e-143	79.75	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080...	[more]
A0A0N9LRH7	4.7e-143	79.75	Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1	[more]

BLAST of CaUC03G066420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26940.1	5.6e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.2	5.6e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.3	5.6e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.4	5.6e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 132..311 e-value: 2.1E-29 score: 113.7
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 135..295 e-value: 1.1E-19 score: 71.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 131..311 e-value: 4.1E-43 score: 149.5
None	No IPR available	PANTHER	PTHR13058:SF23	POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED	coord: 3..329
None	No IPR available	CDD	cd06127	DEDDh	coord: 136..303 e-value: 4.34248E-40 score: 136.662
IPR040393	Three-prime repair exonuclease 1/2	PANTHER	PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	coord: 3..329
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G066420.1	CaUC03G066420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000738	DNA catabolic process, exonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity