CaUC03G065930 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G065930
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Nuclear transcription factor Y subunit B
Location	Ciama_Chr03: 31636503 .. 31636958 (-)
RNA-Seq Expression	CaUC03G065930
Synteny	CaUC03G065930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAATGCAAGACTCATATTAGATCAAAAAAGAATACATTGAGGTTAAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATCGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGCAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATACAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

mRNA sequence

ATGAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATCGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGCAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATACAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

Coding sequence (CDS)

ATGAGAATGGGAGATCAGCATAATGGGGATGAGTTTGTTGAGCTACCAATCGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAGTGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAAAGAGAATCGAAGAACTCTGAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTATGCTGAGATTTCTGCAAAGTACTTGCTCAAGTATAGGGAAGTTGAGAGAATCAAGGCTGATCAATACAAATGCAAAATTACTCAACAACTACAACAAGGAGAAGAAGAAGATGATGATGATGATGAACAAGAACACAATAATCAATTTTAA

Protein sequence

MRMGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDDDDDEQEHNNQF

Homology

[Close]

BLAST of CaUC03G065930 vs. NCBI nr
Match: KAA0050890.1 (nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 104/132 (78.79%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAKKTMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+ AKYLLKYREVERIK D+YKCKITQ+L     +
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLL---PQ 120

Query: 123 DDDDDEQEHNNQ 135
           DDDD EQE N++
Sbjct: 121 DDDDKEQEDNHR 129

[Close]

BLAST of CaUC03G065930 vs. NCBI nr
Match: XP_008451142.1 (PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 103/132 (78.03%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAKKTMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+ AKYL KYREVERIK D+YKCKITQ+L     +
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL---PQ 120

Query: 123 DDDDDEQEHNNQ 135
           DDDD EQE N++
Sbjct: 121 DDDDKEQEDNHR 129

[Close]

BLAST of CaUC03G065930 vs. NCBI nr
Match: XP_023546470.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 6.7e-42
Identity = 94/130 (72.31%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDDD 125
           RRTLNGDDICWAFGS+GLDNYAE SAKYLLKYR+VERI A Q+K  I  + Q+ +++ + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQRHDQDQEQ 122

Query: 126 DDEQEHNNQF 136
             EQE   +F
Sbjct: 123 KQEQEQELEF 130

[Close]

BLAST of CaUC03G065930 vs. NCBI nr
Match: XP_022961414.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 8.8e-42
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
           RRTLNGDDICWAFGS+GLDNYAE SAKYLLKYR+VERI A Q+K  I  + Q+ ++E
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of CaUC03G065930 vs. NCBI nr
Match: XP_022968852.1 (nuclear transcription factor Y subunit B-4-like [Cucurbita maxima])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 93/129 (72.09%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDDD 125
           RRTLNGDDICWAFGS+GLDNYAE SAKYLLKYR++ERI A Q+K  I ++ Q+  +E + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQEREQ 122

Query: 126 DDEQEHNNQ 135
           + EQE   +
Sbjct: 123 EQEQEQEQE 129

[Close]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-31
Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 10  DEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTL 69
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA+EFISFVT EA++KCH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 70  NGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYK 110
           NGDDI WA  + GLDNYA+   ++L KYRE ER + +  K
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK 102

[Close]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-29
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC SEFISFVT EA+ KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 75  CWAFGSYGLDNYAEISAKYLLKYREVERIKADQY 109
           CWA  + G D+YA    KYL +YR +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-25
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK+TMQEC SEFISFVT EA+ KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 75  CWAFGSYGLDNYAEISAKYLLKYREVE 102
            WA  + G ++Y E    YL ++RE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-25
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   DQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKE 64
           + +N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC SEFISFVT EA+ KC +E
Sbjct: 31  NNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQRE 90

Query: 65  NRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDD 124
            R+T+NGDDI WA  + G ++Y      YL KYR+ E  K +  K     Q QQ +++  
Sbjct: 91  KRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK-----QQQQRQQQQQ 150

Query: 125 DDDEQEHNNQF 136
              +  HN QF
Sbjct: 151 IQQQNHHNYQF 156

[Close]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   GDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHK 63
           G     D F  LPIAN+ RIMKK +P   KI+K+AK+T+QEC SEFISF+TSEA+ KC +
Sbjct: 27  GSVREQDRF--LPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQR 86

Query: 64  ENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVE 102
           E R+T+NGDD+ WA  + G ++Y E    YL KYRE+E
Sbjct: 87  EKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 122

[Close]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 104/132 (78.79%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAKKTMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+ AKYLLKYREVERIK D+YKCKITQ+L     +
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDEYKCKITQRLL---PQ 120

Query: 123 DDDDDEQEHNNQ 135
           DDDD EQE N++
Sbjct: 121 DDDDKEQEDNHR 129

[Close]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL
Match: A0A5D3CG76 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003890 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 103/132 (78.03%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAKKTMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+ AKYL KYREVERIK D+YKCKITQ+L     +
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL---PQ 120

Query: 123 DDDDDEQEHNNQ 135
           DDDD EQE N++
Sbjct: 121 DDDDKEQEDNHR 129

[Close]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL
Match: A0A1S3BRX1 (nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC103492518 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 103/132 (78.03%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 3   MGDQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCH 62
           M + +NGDEF+ELPIANV RIMKKI+PQK KISKEAKKTMQECA+EFISFVTSEAAQ+CH
Sbjct: 1   MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCH 60

Query: 63  KENRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 122
            ENRRTLNGDDICWAF S GLDNYAE+ AKYL KYREVERIK D+YKCKITQ+L     +
Sbjct: 61  YENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLL---PQ 120

Query: 123 DDDDDEQEHNNQ 135
           DDDD EQE N++
Sbjct: 121 DDDDKEQEDNHR 129

[Close]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.2e-42
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
           RRTLNGDDICWAFGS+GLDNYAE SAKYLLKYR+VERI A Q+K  I  + Q+ ++E
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINA-QFKTNIAPEQQKHDQE 117

[Close]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL
Match: A0A6J1HUN8 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467987 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.5e-42
Identity = 93/129 (72.09%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 6   QHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKEN 65
           ++NGDE ++LPIANVGR+MKKILPQKAKISKEAK TMQECA+EFISFVTSEAA+KCHK+N
Sbjct: 3   ENNGDE-LQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDN 62

Query: 66  RRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDDD 125
           RRTLNGDDICWAFGS+GLDNYAE SAKYLLKYR++ERI A Q+K  I ++ Q+  +E + 
Sbjct: 63  RRTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDIERINA-QFKTNIAREQQEHGQEREQ 122

Query: 126 DDEQEHNNQ 135
           + EQE   +
Sbjct: 123 EQEQEQEQE 129

[Close]

BLAST of CaUC03G065930 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-32
Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 0


Query: 10  DEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTL 69
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA+EFISFVT EA++KCH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 70  NGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYK 110
           NGDDI WA  + GLDNYA+   ++L KYRE ER + +  K
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK 102

[Close]

BLAST of CaUC03G065930 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-30
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC SEFISFVT EA+ KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 75  CWAFGSYGLDNYAEISAKYLLKYREVERIKADQY 109
           CWA  + G D+YA    KYL +YR +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of CaUC03G065930 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK+TMQEC SEFISFVT EA+ KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 75  CWAFGSYGLDNYAEISAKYLLKYREVE 102
            WA  + G ++Y E    YL ++RE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of CaUC03G065930 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   DQHNGDEFVELPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKE 64
           + +N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC SEFISFVT EA+ KC +E
Sbjct: 31  NNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQRE 90

Query: 65  NRRTLNGDDICWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEEDD 124
            R+T+NGDDI WA  + G ++Y      YL KYR+ E  K +  K     Q QQ +++  
Sbjct: 91  KRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK-----QQQQRQQQQQ 150

Query: 125 DDDEQEHNNQF 136
              +  HN QF
Sbjct: 151 IQQQNHHNYQF 156

[Close]

BLAST of CaUC03G065930 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 114.0 bits (284), Expect = 9.4e-26
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 15  LPIANVGRIMKKILPQKAKISKEAKKTMQECASEFISFVTSEAAQKCHKENRRTLNGDDI 74
           LPIANV RIMKK LP  AKISK+AK+T+QEC SEFISF+T EA+ KC +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 75  CWAFGSYGLDNYAEISAKYLLKYREVERIKADQYKCKITQQLQQGEEE 123
            WA  + G ++Y E    YL KYREVE  K        T   +QG++E
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVEGEKT-------TTAGRQGDKE 126

The following BLAST results are available for this feature:

BLAST of CaUC03G065930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050890.1	3.7e-48	78.79	nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]	[more]
XP_008451142.1	2.4e-47	78.03	PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo] >TYK10242.1...	[more]
XP_023546470.1	6.7e-42	72.31	nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961414.1	8.8e-42	77.78	nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]	[more]
XP_022968852.1	1.1e-41	72.09	nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]	[more]

BLAST of CaUC03G065930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	5.5e-31	65.00	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O82248	4.0e-29	65.96	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.7e-25	63.22	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	3.5e-25	48.85	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
P25209	1.0e-24	55.10	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of CaUC03G065930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6S7	1.8e-48	78.79	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CG76	1.2e-47	78.03	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BRX1	1.2e-47	78.03	nuclear transcription factor Y subunit B-4 OS=Cucumis melo OX=3656 GN=LOC1034925...	[more]
A0A6J1HDY6	4.2e-42	77.78	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HUN8	5.5e-42	72.09	nuclear transcription factor Y subunit B-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CaUC03G065930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	3.9e-32	65.00	nuclear factor Y, subunit B4	[more]
AT2G47810.1	2.8e-30	65.96	nuclear factor Y, subunit B5	[more]
AT5G47640.1	1.9e-26	63.22	nuclear factor Y, subunit B2	[more]
AT2G13570.1	2.5e-26	48.85	nuclear factor Y, subunit B7	[more]
AT4G14540.1	9.4e-26	55.56	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 61..79 score: 27.27 coord: 42..60 score: 50.84 coord: 80..98 score: 27.87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..135
None	No IPR available	PANTHER	PTHR11064:SF83	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 15..131
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..135 e-value: 8.1E-39 score: 134.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..130
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 14..77 e-value: 2.9E-26 score: 91.5
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 15..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G065930.1	CaUC03G065930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding