CaUC03G063370 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G063370
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotochlorophyllide-dependent translocon component 52, chloroplastic-like
LocationCiama_Chr03: 28567769 .. 28570446 (+)
RNA-Seq ExpressionCaUC03G063370
SyntenyCaUC03G063370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCACAGAGAAAGCAGATAGAGAAGGAGGAAAACCAATTGAAATAGTTGTGAGAGACTTAAATGTAAATGGTTTCATCAGTAATCAGGAACTGGGATATAGCAAGTTTATTGCACCTTGTGTACTCTACACTTCTATTAATTTACCTTCTAAGGAAAGAAATTCAAAACACCAAGACAATGGAACTCTCTTATTGGCTGGAAACAATACGGAAAGAAATGTAGAAATTCCTTTCCAAGTTTGCATACATTTTTGGGCGTCGAAAAGTTCGTTACTCTTAAAGCATTTGTGGTTCTTCTTTGGTTGCATCAGATGGCCCCAAATACATCTCAGAGGAAAACGATGGTAGTATTTATGTGTATCCCCGTTAGTCTGGGTAAAAGCAGAGTAATATTTATACCTCTGAGAAATTTTGCTATATGGGTTAACCGAATTATTCCAAGATGGATGTTCCATGTGGGACAAAACCCCGTCTTAGATTCGGATTCATATCTTCTTCATTTGGAGGTAATTACTATCATATTTTCAGCACATTGTTTAAGTCCTTCGAATCATAGATCAAACTTTTTACAATAGTTGAGTTACTCTCCATCAATATTCGGTATTTGAACATGCTACCATGCCGATGAGTACTGGATGGTCCAAAAGTTTAGTCTCCATTTGATAACGATTTATTTTTCATTTATTTTTCTTTCTATTTTATTGTAAATTTATACTTGTTTTCTCCCAAATTCAACAGTATAGTTTTCACACTTCTTTAATACACATTTAAATTCTTAGTCAAATTCTAAAACCAAAAACAGTTTTTGAAAACTACGCTTTTTAGTTTTCAAATTTCGGCTTGAGTTTTTAGAACAATGCTAGAAAGTGAATAATAAAACAAATGAACTTATAGGTGGAAGTAGAGTTTAGGGCCTTAGGAATTACTATCCTATATGATGGAATGAACCTCAAAGCTTACCCTCATCATATGCGATGGTGATCACATTAGTATACTTGAAGGAAAAGATATGTTATGAATGAGCCCTTAATTTTTTTTCATTGCTTTACTCTTTTCTCCATTTTACATTCCTGTTCTGCTGTTGGAAGAACTTTATCATCACCATTAAAGAGTTCTCTTCTGGGATGAACTTTTCACGGTATTGTTCTTGTACAGCACCTAGTGAACACTCCTTGTTAAGCTTACCTACATCAAATTGCAAGAAAAAAAGAAAATATGTGGTTTTATGAATTATTCATCATATAATTATTTGAGTACATTTTATAGGAGAGGAAGATATTGGATGTTGGCACTTCAAATTGGCAGAAAGCTTGTTTTCTACCAACCAAGTCAGACGCCAAAGTGGTTGCCTTCAGAAGGTGGTTGAACAAATATTCTGATGGTCATGTTGATTGGAGAGGCAAGTTCAGTGCCATTCTTCCTCCATCGCCCCCGAAGGAACAGCTGATGGACAGGTAACTCGTTCACAGCTTTGGTATGTTAAACTTTAAATGCACACTCGTTCACTCATTTCATTGCTGAGTTAGATACTCCAATATCTAGGAGATCGTGGTTCAAAGATGGTGGCCATTAGTTGCCTACCTTAGGTATAATAATAATAATATCATACTAATCTTATTTTCAAATGCATTTGTATTGTGGGTTTAGTAGAAATACATATAAGTTAGGCCTTACAATCCACGTTTATTCATTGCTACCATAGTCCCACTTTGGAAAAGTTTTATTTGGAATGACTTTGTAAGTGCTAAAAGCACTAGTCATTCCAAAGTCCAAACAAATCCTTCAAAGTTTGACAGACTTCTTTCGACTCTTTGAGATACCCCTTTTTCGTCATCCTTATTGAAAACTAGTGGGGCTCAGGGCTGTTTTGCGTATTTTGAAAAACCATTTTTCATGATTTAAAATAAAATCTCAATAAATAATATGCTCGAACAGTTACTTTTGACGCATATAATGAGCAATACTTGGGTGCATCTTGGACTGTACCCATCTTTTTGCAACCAACTATAACCACACAGCAAAAATGACAAAAAACATTTAAGAAAAAGGAGAAAGACGAATTTTTCACGTGGTAAACTATTATAGGACGACTGGGTGGGCTGCAAAAAGATGGGTGTAATTTAGGATGCATTGAAGTCTTTTCAATATATAATCTACCATTTGGTCTTTAGAAGTATCGAAGTTATACAATTATCTTTTCACTCACTCCAAAGCCACTAAAAATGTTAAATCTAGAACAAAAACAAAATCTTCTTTAGAGAACAACTATGATACAATCCCCTAACTAACTATTGTTCTCAGTTCAAGGTCATTACTAAGAATCATTCCTACACAAATCATATCATCTCCACAAAGTCCCCTTCCTATATTTTCATACATGAAAAACCAAAAGTTGAAGGCGGGGGAATGTTTTCAGGTACTGGTCTCGTGTGGTGAACTGCAGCAGTTGCAGGGTAGCATACAAGGGCCTCAATGCACTAGAAGTTGTATTGCAGCTCATCTCCATTGTTTCACTTGGAATATTTGCCGCTAGAAAGCAGAGTTTGGTATCTGGAGCTGCTAGAGTTTTGGTGGTGGCCATGGCTATACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAAAACTTCCATTTCCATGATTACAATCATGCCCTTCGGTGA

mRNA sequence

ATGGAATTCACAGAGAAAGCAGATAGAGAAGGAGGAAAACCAATTGAAATAGTTGTGAGAGACTTAAATGTAAATGGTTTCATCAGTAATCAGGAACTGGGATATAGCAAGTTTATTGCACCTTGTGTACTCTACACTTCTATTAATTTACCTTCTAAGGAAAGAAATTCAAAACACCAAGACAATGGAACTCTCTTATTGGCTGGAAACAATACGATGGCCCCAAATACATCTCAGAGGAAAACGATGGTAGTATTTATGTGTATCCCCGTTAGTCTGGGTAAAAGCAGAGTAATATTTATACCTCTGAGAAATTTTGCTATATGGGTTAACCGAATTATTCCAAGATGGATGTTCCATGTGGGACAAAACCCCGTCTTAGATTCGGATTCATATCTTCTTCATTTGGAGGAGAGGAAGATATTGGATGTTGGCACTTCAAATTGGCAGAAAGCTTGTTTTCTACCAACCAAGTCAGACGCCAAAGTGGTTGCCTTCAGAAGGTGGTTGAACAAATATTCTGATGGTCATGTTGATTGGAGAGGCAAGTTCAGTGCCATTCTTCCTCCATCGCCCCCGAAGGAACAGCTGATGGACAGGCGGGGGAATGTTTTCAGGTACTGGTCTCGTGTGGTGAACTGCAGCAGTTGCAGGGTAGCATACAAGGGCCTCAATGCACTAGAAGTTGTATTGCAGCTCATCTCCATTGTTTCACTTGGAATATTTGCCGCTAGAAAGCAGAGTTTGGTATCTGGAGCTGCTAGAGTTTTGGTGGTGGCCATGGCTATACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAAAACTTCCATTTCCATGATTACAATCATGCCCTTCGGTGA

Coding sequence (CDS)

ATGGAATTCACAGAGAAAGCAGATAGAGAAGGAGGAAAACCAATTGAAATAGTTGTGAGAGACTTAAATGTAAATGGTTTCATCAGTAATCAGGAACTGGGATATAGCAAGTTTATTGCACCTTGTGTACTCTACACTTCTATTAATTTACCTTCTAAGGAAAGAAATTCAAAACACCAAGACAATGGAACTCTCTTATTGGCTGGAAACAATACGATGGCCCCAAATACATCTCAGAGGAAAACGATGGTAGTATTTATGTGTATCCCCGTTAGTCTGGGTAAAAGCAGAGTAATATTTATACCTCTGAGAAATTTTGCTATATGGGTTAACCGAATTATTCCAAGATGGATGTTCCATGTGGGACAAAACCCCGTCTTAGATTCGGATTCATATCTTCTTCATTTGGAGGAGAGGAAGATATTGGATGTTGGCACTTCAAATTGGCAGAAAGCTTGTTTTCTACCAACCAAGTCAGACGCCAAAGTGGTTGCCTTCAGAAGGTGGTTGAACAAATATTCTGATGGTCATGTTGATTGGAGAGGCAAGTTCAGTGCCATTCTTCCTCCATCGCCCCCGAAGGAACAGCTGATGGACAGGCGGGGGAATGTTTTCAGGTACTGGTCTCGTGTGGTGAACTGCAGCAGTTGCAGGGTAGCATACAAGGGCCTCAATGCACTAGAAGTTGTATTGCAGCTCATCTCCATTGTTTCACTTGGAATATTTGCCGCTAGAAAGCAGAGTTTGGTATCTGGAGCTGCTAGAGTTTTGGTGGTGGCCATGGCTATACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAAAACTTCCATTTCCATGATTACAATCATGCCCTTCGGTGA

Protein sequence

MEFTEKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGTLLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQNPVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR
Homology
BLAST of CaUC03G063370 vs. NCBI nr
Match: XP_008451030.1 (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo])

HSP 1 Score: 503.8 bits (1296), Expect = 9.7e-139
Identity = 245/286 (85.66%), Postives = 263/286 (91.96%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           +KADREGG+PIEIVVRDL+V+GFISNQ LG+SKF+APCVLYTS NLPSKERN+KHQDNGT
Sbjct: 263 KKADREGGQPIEIVVRDLDVHGFISNQGLGHSKFVAPCVLYTSFNLPSKERNAKHQDNGT 322

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
           L L  NN +A  TSQRK M VFMCIP+S GKSRVIFIPLRNFAIWVN+IIPRWMFH+GQN
Sbjct: 323 LSLGENNAVASKTSQRKRMAVFMCIPISPGKSRVIFIPLRNFAIWVNQIIPRWMFHLGQN 382

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            VLDSDSYLLHLEERKILDVGT+NWQKACFLPTKSDAKVVAFRRWLNKYSDGHV WRGKF
Sbjct: 383 LVLDSDSYLLHLEERKILDVGTANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVGWRGKF 442

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLM+      RYWS VVNCSSC+VAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 443 SGILPPSPPKEQLME------RYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAA 502

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFA+SRWLSHFIYKNFHFHDYNHA+R
Sbjct: 503 TKQSLVSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHAIR 542

BLAST of CaUC03G063370 vs. NCBI nr
Match: XP_004144089.2 (protochlorophyllide-dependent translocon component 52, chloroplastic [Cucumis sativus] >KGN66373.1 hypothetical protein Csa_007214 [Cucumis sativus])

HSP 1 Score: 499.6 bits (1285), Expect = 1.8e-137
Identity = 240/286 (83.92%), Postives = 263/286 (91.96%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           +KAD EGG+PI+IVVRDL+V+GFISNQ LG+ KF+APCV YTS+NLPSKERN+KHQDNGT
Sbjct: 259 KKADEEGGQPIDIVVRDLDVHGFISNQGLGHGKFVAPCVTYTSLNLPSKERNAKHQDNGT 318

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
             L  NNT+AP TSQRKTMVVFMCIP+S GKSRVIFIPLRNFA+WVNRIIPRWMFH+GQN
Sbjct: 319 PSLDENNTVAPKTSQRKTMVVFMCIPISPGKSRVIFIPLRNFAVWVNRIIPRWMFHLGQN 378

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            V+DSDSYLLH+EERKILD G +NWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF
Sbjct: 379 LVMDSDSYLLHVEERKILDAGLANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 438

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLM+      RYWS VVNCSSC+VAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 439 SGILPPSPPKEQLME------RYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAA 498

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFA+SRWLSHFIYK+FHFHDYNHA+R
Sbjct: 499 TKQSLVSGAARVLMVAMAILCFASSRWLSHFIYKSFHFHDYNHAIR 538

BLAST of CaUC03G063370 vs. NCBI nr
Match: XP_038879955.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 498.8 bits (1283), Expect = 3.1e-137
Identity = 244/285 (85.61%), Postives = 261/285 (91.58%), Query Frame = 0

Query: 6   KADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGTL 65
           KADREGGKPIEIVVRD +V+GFISNQE+G SKF+APCVLYTS NLPSKERNS+HQDNGTL
Sbjct: 266 KADREGGKPIEIVVRDFDVHGFISNQEVGNSKFVAPCVLYTSFNLPSKERNSRHQDNGTL 325

Query: 66  LLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQNP 125
           LLA NN + P+TSQRKTMVVFMCIP+S GKSRVIFIPLRNFAIWVNRIIPRWMFH+GQN 
Sbjct: 326 LLAENNPVTPSTSQRKTMVVFMCIPISPGKSRVIFIPLRNFAIWVNRIIPRWMFHLGQNL 385

Query: 126 VLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKFS 185
           VLDSDSYLLH+EERKILDVG SNWQKACFLPTKSDAKVVA RRWLNKYSDGHVDWRGKFS
Sbjct: 386 VLDSDSYLLHVEERKILDVGPSNWQKACFLPTKSDAKVVALRRWLNKYSDGHVDWRGKFS 445

Query: 186 AILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAAR 245
            ILPPSPPK++LMD      RYWS VVNCSSC+VAYK LNALEVVLQ++SI SLGI AA 
Sbjct: 446 GILPPSPPKKKLMD------RYWSHVVNCSSCKVAYKVLNALEVVLQVMSIASLGILAAT 505

Query: 246 KQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
           KQSL SGAARVL+V+MAIL FAASRWLSHFIYKNFHFHDYNHALR
Sbjct: 506 KQSLASGAARVLMVSMAILFFAASRWLSHFIYKNFHFHDYNHALR 544

BLAST of CaUC03G063370 vs. NCBI nr
Match: XP_038879674.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 488.0 bits (1255), Expect = 5.5e-134
Identity = 235/286 (82.17%), Postives = 259/286 (90.56%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EKADREGGKPI+IVVRDL+VNGFI+NQELG S+F APCV YTS +LPSK+R+S  QDNG 
Sbjct: 266 EKADREGGKPIDIVVRDLDVNGFITNQELGTSQFFAPCVFYTSFSLPSKKRDSNRQDNGA 325

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
           LL + NNT+APNTSQRK M++FMCIPV  GKSR+IF+ LRNFA+W++RIIPRW+FHVGQN
Sbjct: 326 LLSSENNTVAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVWIDRIIPRWVFHVGQN 385

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD YLLH+EERKILDVG SNWQKACF+PTKSDAKVVAFRRWLNKYSDG VDWRGKF
Sbjct: 386 LILDSDLYLLHVEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGQVDWRGKF 445

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLMD      RYWS VV+CSSCRVAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 446 SGILPPSPPKEQLMD------RYWSHVVSCSSCRVAYKGLNALEVVLQVISIASLGIFAA 505

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFAASRWLSH+IYKNFHFHDYNHALR
Sbjct: 506 TKQSLVSGAARVLMVAMAILCFAASRWLSHYIYKNFHFHDYNHALR 545

BLAST of CaUC03G063370 vs. NCBI nr
Match: TYK09956.1 (protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa])

HSP 1 Score: 477.6 bits (1228), Expect = 7.4e-131
Identity = 229/290 (78.97%), Postives = 256/290 (88.28%), Query Frame = 0

Query: 1   MEFTEKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQ 60
           M+FTEKADREGGKPI+IVVRDLN+NGFISNQ+LG S+F APCV +TS +LPSK+ NS  Q
Sbjct: 1   MDFTEKADREGGKPIDIVVRDLNINGFISNQDLGSSQFFAPCVFFTSFSLPSKKTNSNRQ 60

Query: 61  DNGTLLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFH 120
           D+G LL   NN +APNTSQRK M++FMCIPV  GKSR+IF+ LRNFA+ ++RIIPRW+FH
Sbjct: 61  DSGALLSGENNAVAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVSIDRIIPRWIFH 120

Query: 121 VGQNPVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDW 180
           VGQN +LDSD YLLH+EERKI DVG SNWQKACF+PTKSDAKVVAFRRWLN+YSDG VDW
Sbjct: 121 VGQNLILDSDLYLLHIEERKISDVGPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDW 180

Query: 181 RGKFSAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLG 240
           RGKF+ ILPPSPPKEQLMD      RYWS VVNCSSC+VAYKGLNALEV LQ+ISI SLG
Sbjct: 181 RGKFNGILPPSPPKEQLMD------RYWSHVVNCSSCKVAYKGLNALEVALQVISIASLG 240

Query: 241 IFAARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
           IFAA KQS VSGAARVL+VAMAILCFA+SRWLSHFIYKNFHFHDYNHALR
Sbjct: 241 IFAATKQSSVSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHALR 284

BLAST of CaUC03G063370 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 5.6e-89
Identity = 161/286 (56.29%), Postives = 209/286 (73.08%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EK DREGGKP+EI V+ L+  GF S QE GYS FIAPCV Y S   P  E+  ++     
Sbjct: 287 EKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCV-YRSSTDPLPEQEHEYP---- 346

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
              A ++  A   S+R+  ++F+CIPVS G+SR+I+   RNF +++++I+PRW+FH+GQN
Sbjct: 347 -APAASDKAA--LSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 406

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD +LLH+EERKIL+ G  NWQKACF+PTKSDA VV FRRW NKYS+  VDWRGKF
Sbjct: 407 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 466

Query: 185 SA-ILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFA 244
              +LPP+PP+EQL D      RYWS V NCSSC+ A+K LNALEV+LQ+ S+  +G+ A
Sbjct: 467 DPFLLPPTPPREQLFD------RYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMA 526

Query: 245 ARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHAL 290
             KQ+ +S  AR+ V+  A+L FAAS+WLSHFIYK FH+HDYNHA+
Sbjct: 527 VLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558

BLAST of CaUC03G063370 vs. ExPASy Swiss-Prot
Match: Q0DV66 (Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PAO PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.8e-18
Identity = 77/269 (28.62%), Postives = 118/269 (43.87%), Query Frame = 0

Query: 38  FIAPCVLYTSINLPSKERNSKHQDNGTLLLAGNNTMAPNTSQRKTMVVFMC---IPVSLG 97
           F+APC     I + +K           L + G+          +  V+++C   IP++ G
Sbjct: 290 FVAPCYALNKIEIDTK-----------LPIFGD----------QKWVIWICSFNIPMAPG 349

Query: 98  KSRVIFIPLRNF--------AIWVNRIIPRWMFHVGQNPVLDSDSYLLHLEERKILDVG- 157
           K+R I    RNF        A W  +++PRW  H   N V D D  +L  +E+  L    
Sbjct: 350 KTRSIVCSARNFFQFSMPGKAWW--QLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASK 409

Query: 158 ------TSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSAILPPSPPKEQLMD 217
                    + K  F PT++D  V+AFR WL K+ +   DW G  S  + PS     ++ 
Sbjct: 410 ESSADINQQYTKITFTPTQADRFVLAFRAWLRKFGNSQPDWFGNPSQEVLPS----TVLS 469

Query: 218 RRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAARKQSLVSGAARVLVV 277
           +R  + RY    + CSSC+ AY     L+ V    ++     F A          R+L+ 
Sbjct: 470 KREMLDRYEQHTLKCSSCKGAYNAFQTLQKVFMGATVA----FCATAGIPADVQFRLLLA 526

Query: 278 AMAILCFAASRWLSHFIYKNFHFHDYNHA 289
           A A++  AA  +  + + KNF F DY HA
Sbjct: 530 AAALVS-AAVAYAFYTLQKNFVFVDYVHA 526

BLAST of CaUC03G063370 vs. ExPASy TrEMBL
Match: A0A1S3BQK3 (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492436 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.7e-139
Identity = 245/286 (85.66%), Postives = 263/286 (91.96%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           +KADREGG+PIEIVVRDL+V+GFISNQ LG+SKF+APCVLYTS NLPSKERN+KHQDNGT
Sbjct: 263 KKADREGGQPIEIVVRDLDVHGFISNQGLGHSKFVAPCVLYTSFNLPSKERNAKHQDNGT 322

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
           L L  NN +A  TSQRK M VFMCIP+S GKSRVIFIPLRNFAIWVN+IIPRWMFH+GQN
Sbjct: 323 LSLGENNAVASKTSQRKRMAVFMCIPISPGKSRVIFIPLRNFAIWVNQIIPRWMFHLGQN 382

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            VLDSDSYLLHLEERKILDVGT+NWQKACFLPTKSDAKVVAFRRWLNKYSDGHV WRGKF
Sbjct: 383 LVLDSDSYLLHLEERKILDVGTANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVGWRGKF 442

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLM+      RYWS VVNCSSC+VAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 443 SGILPPSPPKEQLME------RYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAA 502

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFA+SRWLSHFIYKNFHFHDYNHA+R
Sbjct: 503 TKQSLVSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHAIR 542

BLAST of CaUC03G063370 vs. ExPASy TrEMBL
Match: A0A0A0LX68 (Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 8.9e-138
Identity = 240/286 (83.92%), Postives = 263/286 (91.96%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           +KAD EGG+PI+IVVRDL+V+GFISNQ LG+ KF+APCV YTS+NLPSKERN+KHQDNGT
Sbjct: 259 KKADEEGGQPIDIVVRDLDVHGFISNQGLGHGKFVAPCVTYTSLNLPSKERNAKHQDNGT 318

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
             L  NNT+AP TSQRKTMVVFMCIP+S GKSRVIFIPLRNFA+WVNRIIPRWMFH+GQN
Sbjct: 319 PSLDENNTVAPKTSQRKTMVVFMCIPISPGKSRVIFIPLRNFAVWVNRIIPRWMFHLGQN 378

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            V+DSDSYLLH+EERKILD G +NWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF
Sbjct: 379 LVMDSDSYLLHVEERKILDAGLANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 438

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLM+      RYWS VVNCSSC+VAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 439 SGILPPSPPKEQLME------RYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAA 498

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFA+SRWLSHFIYK+FHFHDYNHA+R
Sbjct: 499 TKQSLVSGAARVLMVAMAILCFASSRWLSHFIYKSFHFHDYNHAIR 538

BLAST of CaUC03G063370 vs. ExPASy TrEMBL
Match: A0A5D3CHU0 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00850 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.6e-131
Identity = 229/290 (78.97%), Postives = 256/290 (88.28%), Query Frame = 0

Query: 1   MEFTEKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQ 60
           M+FTEKADREGGKPI+IVVRDLN+NGFISNQ+LG S+F APCV +TS +LPSK+ NS  Q
Sbjct: 1   MDFTEKADREGGKPIDIVVRDLNINGFISNQDLGSSQFFAPCVFFTSFSLPSKKTNSNRQ 60

Query: 61  DNGTLLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFH 120
           D+G LL   NN +APNTSQRK M++FMCIPV  GKSR+IF+ LRNFA+ ++RIIPRW+FH
Sbjct: 61  DSGALLSGENNAVAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVSIDRIIPRWIFH 120

Query: 121 VGQNPVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDW 180
           VGQN +LDSD YLLH+EERKI DVG SNWQKACF+PTKSDAKVVAFRRWLN+YSDG VDW
Sbjct: 121 VGQNLILDSDLYLLHIEERKISDVGPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDW 180

Query: 181 RGKFSAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLG 240
           RGKF+ ILPPSPPKEQLMD      RYWS VVNCSSC+VAYKGLNALEV LQ+ISI SLG
Sbjct: 181 RGKFNGILPPSPPKEQLMD------RYWSHVVNCSSCKVAYKGLNALEVALQVISIASLG 240

Query: 241 IFAARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
           IFAA KQS VSGAARVL+VAMAILCFA+SRWLSHFIYKNFHFHDYNHALR
Sbjct: 241 IFAATKQSSVSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHALR 284

BLAST of CaUC03G063370 vs. ExPASy TrEMBL
Match: A0A1S3BQM5 (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492435 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.8e-130
Identity = 228/286 (79.72%), Postives = 254/286 (88.81%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EKADREGGKPI+IVVRDLN+NGFISNQ+LG S+F APCV +TS +LPSK+ NS  QD+G 
Sbjct: 266 EKADREGGKPIDIVVRDLNINGFISNQDLGSSQFFAPCVFFTSFSLPSKKTNSNRQDSGA 325

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
           LL   NN +APNTSQRK M++FMCIPV  GKSR+IF+ LRNFA+ ++RIIPRW+FHVGQN
Sbjct: 326 LLSGENNAVAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVSIDRIIPRWIFHVGQN 385

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD YLLH+EERKILDVG SNWQKACF+PTKSDAKVVAFRRWLN+YSDG VDWRGKF
Sbjct: 386 LILDSDLYLLHIEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKF 445

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           + I PPSPPKEQLMD      RYWS VVNCSSC+VAYKGLNALEVVLQ+ISI SLGIFAA
Sbjct: 446 NGIFPPSPPKEQLMD------RYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAA 505

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
            KQSLVSGAARVL+VAMAILCFA+SRWLSHFIYKNFHFHDYNHALR
Sbjct: 506 TKQSLVSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHALR 545

BLAST of CaUC03G063370 vs. ExPASy TrEMBL
Match: A0A6J1HR92 (protochlorophyllide-dependent translocon component 52, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466721 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 7.5e-129
Identity = 228/286 (79.72%), Postives = 249/286 (87.06%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EKADREGGKPIEI V+DL+  GFISNQELG S+F APCV YTS +L SK+R  KHQDNG 
Sbjct: 269 EKADREGGKPIEIFVKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 328

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
           LL A NN  APNTSQRK M+VFMCIPVS G+SR+IF+ LRNFAI ++RIIPRW+FHVGQN
Sbjct: 329 LLSAENNAEAPNTSQRKAMLVFMCIPVSPGRSRLIFVSLRNFAIGIDRIIPRWVFHVGQN 388

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD YLLHLEERKILDVG SNWQKACF+PTKSDAKVVAFRRWLNKYSDGHVDWRGKF
Sbjct: 389 LILDSDLYLLHLEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 448

Query: 185 SAILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFAA 244
           S ILPPSPPKEQLMD      RYWS VVNCSSC  AYKGLNALEVVLQ+ISI  LG+FAA
Sbjct: 449 SGILPPSPPKEQLMD------RYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAA 508

Query: 245 RKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHALR 291
             QSLVSG AR+++VAMA+LCFAASRWLSHFIYKNFHFHDYNHA+R
Sbjct: 509 TNQSLVSGTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHAIR 548

BLAST of CaUC03G063370 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like )

HSP 1 Score: 328.9 bits (842), Expect = 4.0e-90
Identity = 161/286 (56.29%), Postives = 209/286 (73.08%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EK DREGGKP+EI V+ L+  GF S QE GYS FIAPCV Y S   P  E+  ++     
Sbjct: 264 EKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCV-YRSSTDPLPEQEHEYP---- 323

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
              A ++  A   S+R+  ++F+CIPVS G+SR+I+   RNF +++++I+PRW+FH+GQN
Sbjct: 324 -APAASDKAA--LSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 383

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD +LLH+EERKIL+ G  NWQKACF+PTKSDA VV FRRW NKYS+  VDWRGKF
Sbjct: 384 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 443

Query: 185 SA-ILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFA 244
              +LPP+PP+EQL D      RYWS V NCSSC+ A+K LNALEV+LQ+ S+  +G+ A
Sbjct: 444 DPFLLPPTPPREQLFD------RYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMA 503

Query: 245 ARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHAL 290
             KQ+ +S  AR+ V+  A+L FAAS+WLSHFIYK FH+HDYNHA+
Sbjct: 504 VLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 535

BLAST of CaUC03G063370 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like )

HSP 1 Score: 328.9 bits (842), Expect = 4.0e-90
Identity = 161/286 (56.29%), Postives = 209/286 (73.08%), Query Frame = 0

Query: 5   EKADREGGKPIEIVVRDLNVNGFISNQELGYSKFIAPCVLYTSINLPSKERNSKHQDNGT 64
           EK DREGGKP+EI V+ L+  GF S QE GYS FIAPCV Y S   P  E+  ++     
Sbjct: 287 EKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCV-YRSSTDPLPEQEHEYP---- 346

Query: 65  LLLAGNNTMAPNTSQRKTMVVFMCIPVSLGKSRVIFIPLRNFAIWVNRIIPRWMFHVGQN 124
              A ++  A   S+R+  ++F+CIPVS G+SR+I+   RNF +++++I+PRW+FH+GQN
Sbjct: 347 -APAASDKAA--LSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQN 406

Query: 125 PVLDSDSYLLHLEERKILDVGTSNWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGKF 184
            +LDSD +LLH+EERKIL+ G  NWQKACF+PTKSDA VV FRRW NKYS+  VDWRGKF
Sbjct: 407 TILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKF 466

Query: 185 SA-ILPPSPPKEQLMDRRGNVFRYWSRVVNCSSCRVAYKGLNALEVVLQLISIVSLGIFA 244
              +LPP+PP+EQL D      RYWS V NCSSC+ A+K LNALEV+LQ+ S+  +G+ A
Sbjct: 467 DPFLLPPTPPREQLFD------RYWSHVENCSSCKKAHKYLNALEVILQIASVAMIGVMA 526

Query: 245 ARKQSLVSGAARVLVVAMAILCFAASRWLSHFIYKNFHFHDYNHAL 290
             KQ+ +S  AR+ V+  A+L FAAS+WLSHFIYK FH+HDYNHA+
Sbjct: 527 VLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451030.19.7e-13985.66PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-... [more]
XP_004144089.21.8e-13783.92protochlorophyllide-dependent translocon component 52, chloroplastic [Cucumis sa... [more]
XP_038879955.13.1e-13785.61protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor... [more]
XP_038879674.15.5e-13482.17protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benin... [more]
TYK09956.17.4e-13178.97protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q8W4965.6e-8956.29Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop... [more]
Q0DV668.8e-1828.62Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
Match NameE-valueIdentityDescription
A0A1S3BQK34.7e-13985.66protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc... [more]
A0A0A0LX688.9e-13883.92Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4... [more]
A0A5D3CHU03.6e-13178.97Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw... [more]
A0A1S3BQM51.8e-13079.72protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc... [more]
A0A6J1HR927.5e-12979.72protochlorophyllide-dependent translocon component 52, chloroplastic OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT4G25650.14.0e-9056.29ACD1-like [more]
AT4G25650.24.0e-9056.29ACD1-like [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013626Pheophorbide a oxygenasePFAMPF08417PaOcoord: 38..145
e-value: 1.1E-23
score: 83.1
NoneNo IPR availableGENE3D3.90.380.10coord: 30..178
e-value: 2.2E-5
score: 26.3
NoneNo IPR availablePANTHERPTHR21266:SF45SUBFAMILY NOT NAMEDcoord: 5..289
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 5..289
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 66..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G063370.1CaUC03G063370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031967 organelle envelope
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0010277 chlorophyllide a oxygenase [overall] activity
molecular_function GO:0046872 metal ion binding