CaUC03G062940 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G062940
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 28129598 .. 28130068 (+)
RNA-Seq ExpressionCaUC03G062940
SyntenyCaUC03G062940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTCAGTGATGTTGGCAGGGGCATGGCAGGCATCAGGGAGGGCCAAAGCAAGGGAGCCATTGATTTTGAGGCCAAGATTAGGGTCATCTTTGTCCTTGATAAGGACACAAAGGCATTTCTTGCTCTTCTGCACCACCTGTTTCAGTCCACTGCAGCAATCAATGGTTGGTATCTTGGCATCGCCGCTGACATACGGCAAGCAAGGAGCGAGGCCGATGAGTTGGTCTGAGCACTCAGTTCTGTCTTGGTCTATGTTTGAGGCTGCAAAAGAAGCTAGCAGAAGAAGCAAGTTGAAGAAGAGAGAAAAAGCTTCTAACTTTGAAGCCATGGAAATGGTGAAGAGAATTGAGAGAGGAAGATGGGATGATGGGGTTGCTCCTTTTACACTGAACTTGAAGGTGAAGAAAGGGGAGGGAAACAGAGTTGTTGAAAAGGGAGAGAAGGAATGGTTTGTTTGTAGAGAATAG

mRNA sequence

ATGCACTCAGTGATGTTGGCAGGGGCATGGCAGGCATCAGGGAGGGCCAAAGCAAGGGAGCCATTGATTTTGAGGCCAAGATTAGGGTCATCTTTGTCCTTGATAAGGACACAAAGGCATTTCTTGCTCTTCTGCACCACCTGTTTCAGTCCACTGCAGCAATCAATGGTTGGTATCTTGGCATCGCCGCTGACATACGGCAAGCAAGGAGCGAGGCCGATGAGTTGGTCTGAGCACTCAGTTCTGTCTTGGTCTATGTTTGAGGCTGCAAAAGAAGCTAGCAGAAGAAGCAAGTTGAAGAAGAGAGAAAAAGCTTCTAACTTTGAAGCCATGGAAATGGTGAAGAGAATTGAGAGAGGAAGATGGGATGATGGGGTTGCTCCTTTTACACTGAACTTGAAGGTGAAGAAAGGGGAGGGAAACAGAGTTGTTGAAAAGGGAGAGAAGGAATGGTTTGTTTGTAGAGAATAG

Coding sequence (CDS)

ATGCACTCAGTGATGTTGGCAGGGGCATGGCAGGCATCAGGGAGGGCCAAAGCAAGGGAGCCATTGATTTTGAGGCCAAGATTAGGGTCATCTTTGTCCTTGATAAGGACACAAAGGCATTTCTTGCTCTTCTGCACCACCTGTTTCAGTCCACTGCAGCAATCAATGGTTGGTATCTTGGCATCGCCGCTGACATACGGCAAGCAAGGAGCGAGGCCGATGAGTTGGTCTGAGCACTCAGTTCTGTCTTGGTCTATGTTTGAGGCTGCAAAAGAAGCTAGCAGAAGAAGCAAGTTGAAGAAGAGAGAAAAAGCTTCTAACTTTGAAGCCATGGAAATGGTGAAGAGAATTGAGAGAGGAAGATGGGATGATGGGGTTGCTCCTTTTACACTGAACTTGAAGGTGAAGAAAGGGGAGGGAAACAGAGTTGTTGAAAAGGGAGAGAAGGAATGGTTTGTTTGTAGAGAATAG

Protein sequence

MHSVMLAGAWQASGRAKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILASPLTYGKQGARPMSWSEHSVLSWSMFEAAKEASRRSKLKKREKASNFEAMEMVKRIERGRWDDGVAPFTLNLKVKKGEGNRVVEKGEKEWFVCRE
Homology
BLAST of CaUC03G062940 vs. NCBI nr
Match: ERN10187.1 (hypothetical protein AMTR_s00433p00012150, partial [Amborella trichopoda])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-09
Identity = 42/78 (53.85%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 9  AWQASGRAKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILASPLTYGK 68
          A Q  G    RE L L  RLGS   LIR  +HF LF TTCFSPLQQS+VG  ASP TY +
Sbjct: 6  ALQEWGSVAVREVLFLMRRLGSVEYLIRMHKHFPLFSTTCFSPLQQSLVGTAASPCTYSR 65

Query: 69 QGARPMSWSEHSVLSWSM 87
            A P+S S    LS +M
Sbjct: 66 HVASPVSCSVQLFLSSTM 83

BLAST of CaUC03G062940 vs. NCBI nr
Match: KAG6538949.1 (hypothetical protein ZIOFF_004101 [Zingiber officinale])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 39/79 (49.37%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 16 AKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILASPLTYGKQGARPMS 75
          + ARE LI  P  GS  SL   QRHF LF  TCFSP QQS VG  ASP TY      P S
Sbjct: 2  SSARETLIRMPSCGSLRSLTSMQRHFRLFAVTCFSPEQQSGVGDGASPCTYCMHVDSPNS 61

Query: 76 WSEHSVLSWSMFEAAKEAS 95
          W  HS  S +  + A  A+
Sbjct: 62 WLAHSARSLAKSDRAAGAN 80

BLAST of CaUC03G062940 vs. NCBI nr
Match: KAG6534615.1 (hypothetical protein ZIOFF_008518 [Zingiber officinale])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 37/64 (57.81%), Postives = 38/64 (59.38%), Query Frame = 0

Query: 3   SVMLAGAWQASGRAKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILAS 62
           S  LAG  Q  G + ARE LI  P  GS  SL   QRHF LF  TCFSP QQS VG  AS
Sbjct: 143 SETLAGTLQRVGMSSARETLIRMPSCGSLRSLTSMQRHFRLFAVTCFSPEQQSGVGDGAS 202

Query: 63  PLTY 67
           P TY
Sbjct: 203 PCTY 206

BLAST of CaUC03G062940 vs. ExPASy TrEMBL
Match: W1PJP7 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s00433p00012150 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 42/78 (53.85%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 9  AWQASGRAKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILASPLTYGK 68
          A Q  G    RE L L  RLGS   LIR  +HF LF TTCFSPLQQS+VG  ASP TY +
Sbjct: 6  ALQEWGSVAVREVLFLMRRLGSVEYLIRMHKHFPLFSTTCFSPLQQSLVGTAASPCTYSR 65

Query: 69 QGARPMSWSEHSVLSWSM 87
            A P+S S    LS +M
Sbjct: 66 HVASPVSCSVQLFLSSTM 83

BLAST of CaUC03G062940 vs. ExPASy TrEMBL
Match: A0A0E0KKD6 (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 43/84 (51.19%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 2   HSVMLAGAWQASGRAKAREPLILRPRLGSSLSLIRTQRHFLLFCTTCFSPLQQSMVGILA 61
           HS  +A   QA GR+ AR  L+  P  GSS SL  T RHFLL  TTC SP QQS+VG LA
Sbjct: 48  HSEKVAEMEQAEGRSMARVTLMRNPSAGSSRSLTSTHRHFLLPATTCPSPAQQSLVGALA 107

Query: 62  SPL--TYGKQGARPMSWSEHSVLS 84
                TY +  A  +S S HS LS
Sbjct: 108 VAFSSTYVRHVASAISLSAHSALS 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ERN10187.16.6e-0953.85hypothetical protein AMTR_s00433p00012150, partial [Amborella trichopoda][more]
KAG6538949.11.8e-0649.37hypothetical protein ZIOFF_004101 [Zingiber officinale][more]
KAG6534615.13.1e-0657.81hypothetical protein ZIOFF_008518 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W1PJP73.2e-0953.85Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s004... [more]
A0A0E0KKD67.9e-0851.19Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G062940.1CaUC03G062940.1mRNA