CaUC03G062870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G062870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA (Cytosine-5)-methyltransferase CMT3-like
Location	Ciama_Chr03: 27928773 .. 27929129 (+)
RNA-Seq Expression	CaUC03G062870
Synteny	CaUC03G062870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTTTTGGCTTATGCTGTGTACGACGCCGCTGTCGCCTCGGCATCGGAGGTGTTTCAAAGGCTTGTCATTGTTTCCCCGCTGCTTTTGGTCGTCGCCGTTCACTGGCTATCGCTCGGCGGTGGCGGAGGATATAACAGCAACCAGAGCCACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGATTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTTTGCTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

mRNA sequence

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTTTTGGCTTATGCTGTGTACGACGCCGCTGTCGCCTCGGCATCGGAGGTGTTTCAAAGGCTTGTCATTGTTTCCCCGCTGCTTTTGGTCGTCGCCGTTCACTGGCTATCGCTCGGCGGTGGCGGAGGATATAACAGCAACCAGAGCCACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGATTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTTTGCTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

Coding sequence (CDS)

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTTTTGGCTTATGCTGTGTACGACGCCGCTGTCGCCTCGGCATCGGAGGTGTTTCAAAGGCTTGTCATTGTTTCCCCGCTGCTTTTGGTCGTCGCCGTTCACTGGCTATCGCTCGGCGGTGGCGGAGGATATAACAGCAACCAGAGCCACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGATTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTTTGCTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

Protein sequence

MATFSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLGGGGGYNSNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN

Homology

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BLAST of CaUC03G062870 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 5.9e-42
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 8   RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLS 67
           R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLV+VSPLLLVVAVHWLS
Sbjct: 5   RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68  LGGGGGYNSNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 119
           LG  GGYN    +NHSAVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 65  LGRDGGYN----NNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of CaUC03G062870 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MATFSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLV 60
           MA ++R     S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLVIVSPLLLV
Sbjct: 1   MAAYTR-----STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLV 60

Query: 61  VAVHWLSL---GGGGGYNSNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLT 119
           V VHWLSL   GGGGG NS  SHN +AVGFPWGVGFLLLLLLFPWSAAILLL+LYFFFLT
Sbjct: 61  VVVHWLSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLT 116

[Close]

BLAST of CaUC03G062870 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 16  SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLGGGGGYN 75
           S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+V+VSPLLLVVAVHWLS+GGG    
Sbjct: 10  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGG---- 69

Query: 76  SNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 119
           S+     +AVGFPWGVG LLLL+LFPWSAA+LLLLLYFFFLTN
Sbjct: 70  SSGCGTQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN 108

[Close]

BLAST of CaUC03G062870 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-30
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 8  RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLS 67
          R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLV+VSPLLLVVAVHWLS
Sbjct: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68 LGGGGGYNSNQSHNHSAVGFPWGVG 93
          LG  GGYN    +NHSAVGFPWGVG
Sbjct: 65 LGRDGGYN----NNHSAVGFPWGVG 85

[Close]

BLAST of CaUC03G062870 vs. NCBI nr
Match: XP_015957774.2 (uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-16
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   FSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAV 63
           +S +RSSS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+++SPLLL++ V
Sbjct: 38  YSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVV 97

Query: 64  HWLSLGGGGGY---NSNQSHNHSAVGFPWGVGFLLLLLLF 101
           HWLS G    +    S     H A G PWGV F+LLLL F
Sbjct: 98  HWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 137

[Close]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 8   RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLS 67
           R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLV+VSPLLLVVAVHWLS
Sbjct: 5   RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68  LGGGGGYNSNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 119
           LG  GGYN    +NHSAVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 65  LGRDGGYN----NNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 8   RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLS 67
           R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLV+VSPLLLVVAVHWLS
Sbjct: 5   RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68  LGGGGGYNSNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 119
           LG  GGYN    +NHSAVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 65  LGRDGGYN----NNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 16  SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLGGGGGYN 75
           S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+V+VSPLLLVVAVHWLS+GGG    
Sbjct: 10  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGG---- 69

Query: 76  SNQSHNHSAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 119
           S+     +AVGFPWGVG LLLL+LFPWSAA+LLLLLYFFFLTN
Sbjct: 70  SSGCGTQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN 108

[Close]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL
Match: A0A444ZSA4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   FSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAV 63
           +S +RSSS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+++SPLLL++ V
Sbjct: 96  YSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVV 155

Query: 64  HWLSLGGGGGY---NSNQSHNHSAVGFPWGVGFLLLLLLF 101
           HWLS G    +    S     H A G PWGV F+LLLL F
Sbjct: 156 HWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 195

[Close]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL
Match: A0A6P4D1L0 (uncharacterized protein LOC107481931 OS=Arachis duranensis OX=130453 GN=LOC107481931 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   FSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVIVSPLLLVVAV 63
           +S +RSSS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+++SPLLL++ V
Sbjct: 38  YSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVV 97

Query: 64  HWLSLGGGGGY---NSNQSHNHSAVGFPWGVGFLLLLLLF 101
           HWLS G    +    S     H A G PWGV F+LLLL F
Sbjct: 98  HWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 137

The following BLAST results are available for this feature:

BLAST of CaUC03G062870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660097.1	5.9e-42	90.99	uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosi...	[more]
KAG6588160.1	1.4e-38	80.17	hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022157357.1	3.2e-32	76.70	uncharacterized protein LOC111024080 [Momordica charantia]	[more]
KAE8653489.1	5.1e-30	89.41	hypothetical protein Csa_006929, partial [Cucumis sativus]	[more]
XP_015957774.2	9.4e-16	51.00	uncharacterized protein LOC107481931 [Arachis duranensis]	[more]

BLAST of CaUC03G062870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G062870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFN5	2.8e-42	90.99	DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0M2K2	2.8e-42	90.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]
A0A6J1DUA1	1.6e-32	76.70	uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A444ZSA4	4.6e-16	51.00	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1	[more]
A0A6P4D1L0	4.6e-16	51.00	uncharacterized protein LOC107481931 OS=Arachis duranensis OX=130453 GN=LOC10748...	[more]

BLAST of CaUC03G062870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..113
None	No IPR available	PANTHER	PTHR33306:SF22	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G062870.1	CaUC03G062870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane