CaUC03G062710 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G062710
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Enzymatic polyprotein
Location	Ciama_Chr03: 27463747 .. 27465369 (+)
RNA-Seq Expression	CaUC03G062710
Synteny	CaUC03G062710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTTAGGGGTCATGTCATGTTGGCCACACATGTACTCAATTATTGTGGAGACACGTGTCAAGATCTTACAAAGAAAAGTAACGATGGATATTAGAGTGTAATTATTGTCTTTCTTCTGTAAGTAGCGAGCACCTCTACCCTCAAAAGTATCAAAGGCTTAGAGCCTTGCGGCCTTCTCTCTAAAACTTCTCTTTTTTCTCTCTCTAAATAAACTCTTCTTAGAGCCCGGGATGAAATGGTATTAGATCTTTAAGATTTTCTTTTTAAAAGTATGACATATTTATGAATCTCAAATTAATTTCTTCATAAATTATAATCTATTTTCTCTCTTTGTCCTAACTGATTAATGAACTTATTCAAATCTTTTAATAAATTGTGAAAGTGATGTGAGTAAGGCGTGGTTAACATTCATATCAAGTAGTTTAATTTCATTAATTATTTATGACTAAAGATTGATTGAATAAGGGTTATAACTTATCAAGAAACTAATTTGAATTTATTATCGTCAAAATCTTCGAAAGATATTCTTAAATAAATGTTTCCTTAGGTTGGCTTCTTCATGCTTTCTAAACTTCTCTCTAAAATTTCTCCTCGCCCTCTAGTGATAATTGATAATATCGCTTCTTCTTCTTTTTTTTTTTCTAAAAATTGATGATATTTTAAAAATCATATCAAAGCATAATTCAACCGAAGTTCAAATTGCTAAAGTTGAAGAGCAACTAAAAAACTGGTCTATCTCGAAATTAGACGCACATCAAATCTACAAAGTTAACAACTTCAATTTTTCTTAGAATTATATTATAGTAATCACTGAGAAAGATCTTGCAATAAGGATTAATTTACAGAAATCAACCTTTTGTCAAAAGAATAAATAGCTCCAGCTCGCACCAAATTCAAATACCTCCATATTGGATGTTTTCAAGTTGCTCTCAAGCCACTCTTTAGGGAAGGATTGGACGTACCTTGCTCTAAGAGACAAAAGACATTTGAGATTTTCACAATCTCTTTTAGGTGTGGTTCAATTAAACCTGGAAAACAATTTATTCTTCTTCTCCCGCAGACCAAGCTTTACCGTTTCTTTAGAAGACGCAAACATCTTGGATACTTTAAGCTCTGATGTTCATTCTCAAGGACTCGAGCTAAAGAACGGATCACTTCCTTTTGTGGTTCTTTATCGAGTTTAGTACAAGTTGATGAATACAAATCTTTCTCTAAAAGCCCTCGGAATATCTCCAAAAGGCTATACCATGCTCATGGAAGTCAATCTTGAGGAATTCTCGATGATCGTGCCCAAAATTTTGTAGTGGGATGAACTTACTCAAAATCCTATTTGGAGTATGGAGAAATCCTTGAGAAATCCTCATTAGCTTTGTAGATTTGACGTGGGTCTAATTTCGAGATAGACCCATTTTTGAGTTGCTCTTCAACCTTAGCAATTTGAACTTCAGTTGAATTATGCTTTGATATGATTTTTGAAATATCATCATTTTTTCAGAAAGAAGAAGAAGAAGCGATATTATCAATGATGATTGGAGAGCGAGGAGAAATCTTAGAGAGAAGTTTAGAAAGCATGAGAAGGGAAGAAGTGAACTTGAGGATTTGGAGAACATTACTTTAA

mRNA sequence

ATGCAAGTTGGCTTCTTCATGCTTTCTAAACTTCTCTCTAAAATTTCTCCTCGCCCTCTACATAATTCAACCGAAGTTCAAATTGCTAAAGTTGAAGAGCAACTAAAAAACTGGTCTATCTCGAAATTAGACGCACATCAAATCTACAAACTCCAGCTCGCACCAAATTCAAATACCTCCATATTGGATGTTTTCAAGTTGCTCTCAAGCCACTCTTTAGGGAAGGATTGGACGTACCTTGCTCTAAGAGACAAAAGACATTTGAGATTTTCACAATCTCTTTTAGGTGTGGTTCAATTAAACCTGGAAAACAATTTATTCTTCTTCTCCCGCAGACCAAGCTTTACCGTTTCTTTAGAAGACGCAAACATCTTGGATACTTTAAGCTCTGATGTTCATTCTCAAGGACTCGAGCTAAAGAACGGATCACTTCCTTTTGTGAAAGAAGAAGAAGAAGCGATATTATCAATGATGATTGGAGAGCGAGGAGAAATCTTAGAGAGAAGTTTAGAAAGCATGAGAAGGGAAGAAGTGAACTTGAGGATTTGGAGAACATTACTTTAA

Coding sequence (CDS)

ATGCAAGTTGGCTTCTTCATGCTTTCTAAACTTCTCTCTAAAATTTCTCCTCGCCCTCTACATAATTCAACCGAAGTTCAAATTGCTAAAGTTGAAGAGCAACTAAAAAACTGGTCTATCTCGAAATTAGACGCACATCAAATCTACAAACTCCAGCTCGCACCAAATTCAAATACCTCCATATTGGATGTTTTCAAGTTGCTCTCAAGCCACTCTTTAGGGAAGGATTGGACGTACCTTGCTCTAAGAGACAAAAGACATTTGAGATTTTCACAATCTCTTTTAGGTGTGGTTCAATTAAACCTGGAAAACAATTTATTCTTCTTCTCCCGCAGACCAAGCTTTACCGTTTCTTTAGAAGACGCAAACATCTTGGATACTTTAAGCTCTGATGTTCATTCTCAAGGACTCGAGCTAAAGAACGGATCACTTCCTTTTGTGAAAGAAGAAGAAGAAGCGATATTATCAATGATGATTGGAGAGCGAGGAGAAATCTTAGAGAGAAGTTTAGAAAGCATGAGAAGGGAAGAAGTGAACTTGAGGATTTGGAGAACATTACTTTAA

Protein sequence

MQVGFFMLSKLLSKISPRPLHNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQLAPNSNTSILDVFKLLSSHSLGKDWTYLALRDKRHLRFSQSLLGVVQLNLENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPFVKEEEEAILSMMIGERGEILERSLESMRREEVNLRIWRTLL

Homology

[Close]

BLAST of CaUC03G062710 vs. NCBI nr
Match: TYK04698.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 87/210 (41.43%), Postives = 106/210 (50.48%), Query Frame = 0


Query: 7   MLSKLLSKISP----------------------RP---------LHNSTEVQIAKVEEQL 66
           MLSKLLSK+SP                      RP          HN+TE  +A+VE +L
Sbjct: 1   MLSKLLSKLSPHSPTIIDATVSSSYSSSSSSNLRPQDDLSMALAKHNTTEAHLAQVENRL 60

Query: 67  KNWSISKLDAHQIYKLQLAPNSNTSI-------------LDVFKLLSSHSLGK------- 126
           KNWSI KL+A+Q+YK+     S   +             L   KLL   +L K       
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLFKVKEKFKY 120

Query: 127 -------------------DWTYLALRDKRHLRFSQSLLGVVQLNLENNLFFFSRRPSFT 147
                                 YLALRDKRHLRF+ SLLG+VQ NLE    +F+ RP  T
Sbjct: 121 LHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGIVQSNLEQGPVYFNCRPGLT 180

[Close]

BLAST of CaUC03G062710 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. NCBI nr
Match: XP_016900528.1 (PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-25
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQLAPNSNTSI-------------LDVFKL 80
           HN+TE  +A+VE +LKNWSI KL+A+Q+YK+     S   +             L   KL
Sbjct: 6   HNTTEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKL 65

Query: 81  LSSHSLGK--------------------------DWTYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L K                             YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 66  LPKETLFKVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGIVQSN 125

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 126 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 170

[Close]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL
Match: A0A5D3C0A5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold676G00190 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 87/210 (41.43%), Postives = 106/210 (50.48%), Query Frame = 0


Query: 7   MLSKLLSKISP----------------------RP---------LHNSTEVQIAKVEEQL 66
           MLSKLLSK+SP                      RP          HN+TE  +A+VE +L
Sbjct: 1   MLSKLLSKLSPHSPTIIDATVSSSYSSSSSSNLRPQDDLSMALAKHNTTEAHLAQVENRL 60

Query: 67  KNWSISKLDAHQIYKLQLAPNSNTSI-------------LDVFKLLSSHSLGK------- 126
           KNWSI KL+A+Q+YK+     S   +             L   KLL   +L K       
Sbjct: 61  KNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLFKVKEKFKY 120

Query: 127 -------------------DWTYLALRDKRHLRFSQSLLGVVQLNLENNLFFFSRRPSFT 147
                                 YLALRDKRHLRF+ SLLG+VQ NLE    +F+ RP  T
Sbjct: 121 LHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGIVQSNLEQGPVYFNCRPGLT 180

[Close]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL
Match: A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL
Match: A0A5A7UX67 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001460 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 77/165 (46.67%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQ----------LAPNSNTSILDVF---KL 80
           HNS E  +A+VE +LKNWSI KL+A+Q+YK+           +    N ++ D F   KL
Sbjct: 46  HNSAEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQDVIVITEENVAMKDEFTAIKL 105

Query: 81  LSSHSL-------------------------GKDW-TYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L                         G D   YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 106 LPEETLFKVRDRFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRHLRFTPSLLGIVQSN 165

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 166 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 210

[Close]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL
Match: A0A1S4DX30 (uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 21  HNSTEVQIAKVEEQLKNWSISKLDAHQIYKLQLAPNSNTSI-------------LDVFKL 80
           HN+TE  +A+VE +LKNWSI KL+A+Q+YK+     S   +             L   KL
Sbjct: 6   HNTTEAHLAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKL 65

Query: 81  LSSHSLGK--------------------------DWTYLALRDKRHLRFSQSLLGVVQLN 140
           L   +L K                             YLALRDKRHLRF+ SLLG+VQ N
Sbjct: 66  LPKETLFKVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRHLRFTPSLLGIVQSN 125

Query: 141 LENNLFFFSRRPSFTVSLEDANILDTLSSDVHSQGLELKNGSLPF 147
           LE    +F+ RP  TVSL+D NI+DT+S DVHSQGLELK+GSLPF
Sbjct: 126 LEQGPVYFNCRPGLTVSLQDKNIMDTISLDVHSQGLELKDGSLPF 170

The following BLAST results are available for this feature:

BLAST of CaUC03G062710 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04698.1	2.1e-25	41.43	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059217.1	4.6e-25	46.67	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97599.1	4.6e-25	46.67	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056776.1	4.6e-25	46.67	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
XP_016900528.1	6.1e-25	45.45	PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo]	[more]

BLAST of CaUC03G062710 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G062710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0A5	1.0e-25	41.43	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold676G00190 PE...	[more]
A0A5D3BEY3	2.2e-25	46.67	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69...	[more]
A0A5A7UX67	2.2e-25	46.67	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7UR29	2.2e-25	46.67	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A1S4DX30	2.9e-25	45.45	uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=...	[more]

BLAST of CaUC03G062710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028919	Viral movement protein	PFAM	PF01107	MP	coord: 80..146 e-value: 5.2E-9 score: 35.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G062710.1	CaUC03G062710.1	mRNA