CaUC03G059620 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G059620
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTruB_N domain-containing protein
LocationCiama_Chr03: 14973482 .. 14973973 (-)
RNA-Seq ExpressionCaUC03G059620
SyntenyCaUC03G059620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA

mRNA sequence

ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA

Coding sequence (CDS)

ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA

Protein sequence

MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTSTPFPLQYEMIINRPYPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISESEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGFA
Homology
BLAST of CaUC03G059620 vs. NCBI nr
Match: KAA0037597.1 (TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF  TST
Sbjct: 1   MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61  PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           S  VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162

BLAST of CaUC03G059620 vs. NCBI nr
Match: XP_008458830.1 (PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF  TST
Sbjct: 1   MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61  PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           S  VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162

BLAST of CaUC03G059620 vs. NCBI nr
Match: XP_038891059.1 (uncharacterized protein LOC120080471 [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 132/163 (80.98%), Postives = 138/163 (84.66%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           M KS ALF+AS F I ST M SS +LTLFL  SNLNHLH FAFRNSLS L   R STTST
Sbjct: 1   MVKSSALFHASNFFIRSTFMPSSITLTLFLLPSNLNHLHRFAFRNSLSPLSPRRLSTTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQYEMIINRP YP PPHQNRRTP RI SDNSPE  SSED +SE+GFESWVDRKLISE
Sbjct: 61  PFPLQYEMIINRPSYPPPPHQNRRTPTRIRSDNSPEFDSSEDPTSEMGFESWVDRKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           SE +SGKEGVV+DKAMRKYYNKRRKRMYGSD DEDNKTQDEGF
Sbjct: 121 SETISGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNKTQDEGF 163

BLAST of CaUC03G059620 vs. NCBI nr
Match: XP_011655389.2 (uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hypothetical protein Csa_008523 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L  FSTT T
Sbjct: 16  MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
            FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76  LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
              VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177

BLAST of CaUC03G059620 vs. NCBI nr
Match: XP_031741429.1 (uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L  FSTT T
Sbjct: 16  MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
            FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76  LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
              VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177

BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match: A0A5A7T7S0 (TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00150 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.4e-61
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF  TST
Sbjct: 1   MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61  PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           S  VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162

BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match: A0A1S3C8B0 (uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.4e-61
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF  TST
Sbjct: 1   MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61  PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           S  VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162

BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match: A0A0A0KP03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L  FSTT T
Sbjct: 16  MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
            FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76  LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
              VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177

BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match: A0A6J1JSH8 (uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.5e-54
Identity = 127/163 (77.91%), Postives = 133/163 (81.60%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MA S AL +AS F I STLMASSKSL  F PLSNLNHLH   F NSLS L L R STTST
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQY+MIIN P YP  P QNRRTP RISSDNSPEL SSED  SELGFESWVD+KLISE
Sbjct: 61  PFPLQYDMIINHPIYPPMPPQNRRTPPRISSDNSPELESSEDPVSELGFESWVDQKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           SE+ SGKEGVV+DKA RKYYNKRR+RMYGSD DED KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRRRMYGSDSDEDKKTQDEGF 161

BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match: A0A6J1FDZ7 (uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC111444875 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.8e-54
Identity = 127/163 (77.91%), Postives = 134/163 (82.21%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MA S AL +AS F I STLMASSKSL  F PLSNLNHLH   F NSLS L L R STTST
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60

Query: 61  PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
           PFPLQY+MII+RP YP  P QNRRTPARIS DNSPEL SSED  SELGFESWVD+KLISE
Sbjct: 61  PFPLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISE 120

Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
           SE+ SGKEGVV+DKA RKYYNKRRKRMYGSD DE+ KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGF 161

BLAST of CaUC03G059620 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 69/165 (41.82%), Postives = 93/165 (56.36%), Query Frame = 0

Query: 1   MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
           MAKSL   + +R    S  M+ +  L  F  +    ++H    +  L+SL L   STTST
Sbjct: 1   MAKSL---HFTRLMSSSARMSMTSPL-FFSSVKPWRNIH----KPYLASLFL---STTST 60

Query: 61  PFPLQYEMIINRPYPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISES 120
            +PLQY+MIINRP      QNRR P +     +P+       S+E  F+SWVD KL  E 
Sbjct: 61  RYPLQYDMIINRPTQSSLSQNRRRPPKAIESGAPD-------SAEPEFDSWVDNKLAMER 120

Query: 121 E-AVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQ--DEGF 163
           E    G     +DKA RKYY+KRRKR+YGSD +++N ++  DEGF
Sbjct: 121 EQGRPGSGDPEMDKAKRKYYSKRRKRLYGSDSEDENSSRKSDEGF 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037597.11.7e-6083.44TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N d... [more]
XP_008458830.11.7e-6083.44PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo][more]
XP_038891059.18.6e-6080.98uncharacterized protein LOC120080471 [Benincasa hispida][more]
XP_011655389.23.3e-5981.60uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hy... [more]
XP_031741429.13.3e-5981.60uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T7S08.4e-6183.44TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3C8B08.4e-6183.44uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=... [more]
A0A0A0KP031.6e-5981.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1[more]
A0A6J1JSH84.5e-5477.91uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372... [more]
A0A6J1FDZ75.8e-5477.91uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC1114448... [more]
Match NameE-valueIdentityDescription
AT5G14460.13.3e-1741.82Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G059620.1CaUC03G059620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006396 RNA processing
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding