Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
mRNA sequence
ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
Coding sequence (CDS)
ATGGCGAAATCACTTGCTCTGTTTTACGCCTCCCGTTTCTCCATCTGCTCTACACTCATGGCTTCTTCCAAATCACTCACTCTCTTCCTTCCACTCTCAAACCTCAACCATCTCCACGGGTTTGCCTTTCGCAATTCACTCTCTTCCTTATTGCTTTGCAGATTCTCCACCACTTCAACCCCATTCCCCCTACAATACGAAATGATCATCAACCGACCTTATCCTCTGCCGCCCCATCAGAATCGACGAACACCCGCCAGAATCAGCTCCGACAACTCTCCCGAGCTCCACTCCTCCGAGGATTCCTCTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCGGAAGCTTATATCCGAGAGTGAAGCTGTGTCCGGTAAGGAAGGCGTGGTCATCGATAAGGCCATGAGGAAATACTATAATAAAAGAAGGAAGAGGATGTATGGGTCTGATGAAGATGAAGATAATAAGACGCAGGACGAGGGATTTGCTTAA
Protein sequence
MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTSTPFPLQYEMIINRPYPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISESEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGFA
Homology
BLAST of CaUC03G059620 vs. NCBI nr
Match:
KAA0037597.1 (TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
S VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CaUC03G059620 vs. NCBI nr
Match:
XP_008458830.1 (PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo])
HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
S VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CaUC03G059620 vs. NCBI nr
Match:
XP_038891059.1 (uncharacterized protein LOC120080471 [Benincasa hispida])
HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 132/163 (80.98%), Postives = 138/163 (84.66%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
M KS ALF+AS F I ST M SS +LTLFL SNLNHLH FAFRNSLS L R STTST
Sbjct: 1 MVKSSALFHASNFFIRSTFMPSSITLTLFLLPSNLNHLHRFAFRNSLSPLSPRRLSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQYEMIINRP YP PPHQNRRTP RI SDNSPE SSED +SE+GFESWVDRKLISE
Sbjct: 61 PFPLQYEMIINRPSYPPPPHQNRRTPTRIRSDNSPEFDSSEDPTSEMGFESWVDRKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
SE +SGKEGVV+DKAMRKYYNKRRKRMYGSD DEDNKTQDEGF
Sbjct: 121 SETISGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNKTQDEGF 163
BLAST of CaUC03G059620 vs. NCBI nr
Match:
XP_011655389.2 (uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hypothetical protein Csa_008523 [Cucumis sativus])
HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CaUC03G059620 vs. NCBI nr
Match:
XP_031741429.1 (uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus])
HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match:
A0A5A7T7S0 (TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00150 PE=3 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 8.4e-61
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
S VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match:
A0A1S3C8B0 (uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=3 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 8.4e-61
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL LFLPLSNLNH H FAFRNSLS L L RF TST
Sbjct: 1 MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRF-CTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQYE+IINRP YP PPHQN RTPARISSDN PEL+SSED SSELGF+SWVDRKLISE
Sbjct: 61 PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
S VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQDEGF
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGF 162
BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match:
A0A0A0KP03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 133/163 (81.60%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKS ALF+AS F I STLM SSKSL+LFLPLSNLNHLH FAFRNSLS L L FSTT T
Sbjct: 16 MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
FPLQYE+IINRP YP PPHQN RTPAR+SSDNSPEL+SSED +SELGF+SWVDRKLISE
Sbjct: 76 LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
VSGKEGVV+DKAMRKYYNKRRKRMYGSD DEDN+TQ EGF
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGF 177
BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match:
A0A6J1JSH8 (uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372 PE=3 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 4.5e-54
Identity = 127/163 (77.91%), Postives = 133/163 (81.60%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MA S AL +AS F I STLMASSKSL F PLSNLNHLH F NSLS L L R STTST
Sbjct: 1 MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQY+MIIN P YP P QNRRTP RISSDNSPEL SSED SELGFESWVD+KLISE
Sbjct: 61 PFPLQYDMIINHPIYPPMPPQNRRTPPRISSDNSPELESSEDPVSELGFESWVDQKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
SE+ SGKEGVV+DKA RKYYNKRR+RMYGSD DED KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRRRMYGSDSDEDKKTQDEGF 161
BLAST of CaUC03G059620 vs. ExPASy TrEMBL
Match:
A0A6J1FDZ7 (uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC111444875 PE=3 SV=1)
HSP 1 Score: 220.3 bits (560), Expect = 5.8e-54
Identity = 127/163 (77.91%), Postives = 134/163 (82.21%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MA S AL +AS F I STLMASSKSL F PLSNLNHLH F NSLS L L R STTST
Sbjct: 1 MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLH--RFPNSLSLLSLRRSSTTST 60
Query: 61 PFPLQYEMIINRP-YPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISE 120
PFPLQY+MII+RP YP P QNRRTPARIS DNSPEL SSED SELGFESWVD+KLISE
Sbjct: 61 PFPLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISE 120
Query: 121 SEAVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQDEGF 163
SE+ SGKEGVV+DKA RKYYNKRRKRMYGSD DE+ KTQDEGF
Sbjct: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGF 161
BLAST of CaUC03G059620 vs. TAIR 10
Match:
AT5G14460.1 (Pseudouridine synthase family protein )
HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 69/165 (41.82%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 1 MAKSLALFYASRFSICSTLMASSKSLTLFLPLSNLNHLHGFAFRNSLSSLLLCRFSTTST 60
MAKSL + +R S M+ + L F + ++H + L+SL L STTST
Sbjct: 1 MAKSL---HFTRLMSSSARMSMTSPL-FFSSVKPWRNIH----KPYLASLFL---STTST 60
Query: 61 PFPLQYEMIINRPYPLPPHQNRRTPARISSDNSPELHSSEDSSSELGFESWVDRKLISES 120
+PLQY+MIINRP QNRR P + +P+ S+E F+SWVD KL E
Sbjct: 61 RYPLQYDMIINRPTQSSLSQNRRRPPKAIESGAPD-------SAEPEFDSWVDNKLAMER 120
Query: 121 E-AVSGKEGVVIDKAMRKYYNKRRKRMYGSDEDEDNKTQ--DEGF 163
E G +DKA RKYY+KRRKR+YGSD +++N ++ DEGF
Sbjct: 121 EQGRPGSGDPEMDKAKRKYYSKRRKRLYGSDSEDENSSRKSDEGF 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0037597.1 | 1.7e-60 | 83.44 | TruB_N domain-containing protein [Cucumis melo var. makuwa] >TYK09336.1 TruB_N d... | [more] |
XP_008458830.1 | 1.7e-60 | 83.44 | PREDICTED: uncharacterized protein LOC103498118 [Cucumis melo] | [more] |
XP_038891059.1 | 8.6e-60 | 80.98 | uncharacterized protein LOC120080471 [Benincasa hispida] | [more] |
XP_011655389.2 | 3.3e-59 | 81.60 | uncharacterized protein LOC101215528 isoform X1 [Cucumis sativus] >KGN51348.1 hy... | [more] |
XP_031741429.1 | 3.3e-59 | 81.60 | uncharacterized protein LOC101215528 isoform X2 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T7S0 | 8.4e-61 | 83.44 | TruB_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3C8B0 | 8.4e-61 | 83.44 | uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=... | [more] |
A0A0A0KP03 | 1.6e-59 | 81.60 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1 | [more] |
A0A6J1JSH8 | 4.5e-54 | 77.91 | uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372... | [more] |
A0A6J1FDZ7 | 5.8e-54 | 77.91 | uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC1114448... | [more] |
Match Name | E-value | Identity | Description | |
AT5G14460.1 | 3.3e-17 | 41.82 | Pseudouridine synthase family protein | [more] |