CaUC03G059350 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G059350
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionAlanine--tRNA ligase
LocationCiama_Chr03: 13033466 .. 13034840 (-)
RNA-Seq ExpressionCaUC03G059350
SyntenyCaUC03G059350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCTTCTGAACTCTTCTTCACCCTCCCAGCTATTACTCGGCAAACCAGCATTGCTCGTTTTTCGTTGCCGTTGCCGGACTCCGATGATACTCCCGCACTATCATGAGCCTTTCCACTGGTAGCGGTTGTTAGAATCCCCTTTCCAGCTTCCCCTCCGGTAGCCTCTGCAGCCACCTTGAACCCATTCTTGATTATGCTACACACATTGCATTGTGGGATTGAACTACAGAGGTTTGAAGAGCCATTTAGGCCCAATGAACAACCCAGGGTTGTGCAATGGAACCTTAGGAGTTCGTTACCGTCTGCTATGCAACGTGGGTATTTCTTTGGAAGCTTGGTGGCTTTGGCTTTAATGGAATCCCTGTATTCCTCGAATTTCGAGATGGTTTTTGGAGTGTTCTGGACTTTAAGAATCCTTTCAATTTTGCAAATTGGGGTTTGCTTTTTTAGCCAGCTCGATTGGAATATGATTTCCACTATGTTCTTGCTTGTGTCTTCAGGACCAAGTTCAGATACTAAAAAAAATTAAGACAATAACAAAATAAGCTTAGACCTTAAATTAATGAGACATTAAAAGGGAGGGATGGTAAGGTTAAGTACCTGCATGTCTAACACTCTGGTGAAGCTCCAAAGTTTCAGGTTTCATGAAGATCTCACCACATTCAGGACAAGGGCAAATGGTTGCTCTAAGAGAAGGATCTCTAGTCATCCCAATAACAGGGTCAATCACCATTTTACATTCATAACAGCCATAAAATCTTCTGAAAGGCATTCCCCTGAAAGAGGAGGCTCCATTGGAGGAATTAGAAGAAGATGATGATGCAGATAATGATGAACATGTGGCTGATACAACTCCAGTTTGTTCATTCAAAGGAGGAGCTTTGCTGGATCTACTTGAACTTGAAGATTCATTGTTTCTGGAAGTCAAAACCCTTTTCTTGTGAACTTCTGGGGATGCAGCTGCTTCAAGCCTGTGTGTTATCTTGGTGTTGCTACAGAGTGAACCTGAACATCTCATTTTCTTACAGTTCTTGCTAATCTCTTCTGTTGCTTGCTCCTGTTGTTTCTCTTTGCGTGGTAATTGATGATGTTGTTGTTGCTGCTGCTGCTGAGGCTGCAGGTACTTGCAACTGAATATGCCTTTAACAACAGCCCAAGACGGCGGCTTCGGTTTCTGGTTTTCATGGCTCTGTCTGCTGAGCTTTCTCTGTATTTTGGGTTTGGCCATGGCAGATGCCATTTCTTCACTGGAAAATCTGAAAAGGCAGGGAAGAAATTCAGGTCAAATAGTAAATGAAATGGGATTTTTTTGCTTTTCTTTTTTTCTTCAGGATGTCAAAAGAAGGAATGCACTTCCTCAGCAGAATTAG

mRNA sequence

ATGCTTCCTTCTGAACTCTTCTTCACCCTCCCAGCTATTACTCGGCAAACCAGCATTGCTCGTTTTTCAATCCCCTTTCCAGCTTCCCCTCCGGTAGCCTCTGCAGCCACCTTGAACCCATTCTTGATTATGCTACACACATTGCATTGTGGGATTGAACTACAGAGGTTTGAAGAGCCATTTAGGCCCAATGAACAACCCAGGGTTGTGCAATGGAACCTTAGGAGTTCGTTACCGTCTGCTATGCAACGTGGGTATTTCTTTGGAAGCTTGGTGGCTTTGGCTTTAATGGAATCCCTGTATTCCTCGAATTTCGAGATGGTTTTTGGAGTGTTCTGGACTTTAAGAATCCTTTCAATTTTGCAAATTGGGGTTTGCTTTTTTAGCCAGCTCGATTGGAATATGATTTCCACTATGTTCTTGCTTGTGTCTTCAGGACCAAGGATGGTAAGGTTAAGTACCTGCATGTCTAACACTCTGGTGAAGCTCCAAAGTTTCAGGTTTCATGAAGATCTCACCACATTCAGGACAAGGGCAAATGGCATTCCCCTGAAAGAGGAGGCTCCATTGGAGGAATTAGAAGAAGATGATGATGCAGATAATGATGAACATGTGGCTGATACAACTCCAGTTTGTTCATTCAAAGGAGGAGCTTTGCTGGATCTACTTGAACTTGAAGATTCATTGTTTCTGGAAGTCAAAACCCTTTTCTTGTACTTGCAACTGAATATGCCTTTAACAACAGCCCAAGACGGCGGCTTCGGTTTCTGGTTTTCATGGCTCTGTCTGCTGAGCTTTCTCTGTATTTTGGGTTTGGCCATGGCAGATGCCATTTCTTCACTGGAAAATCTGAAAAGGCAGGGAAGAAATTCAGGTCAAATAGTAAATGAAATGGGATTTTTTTGCTTTTCTTTTTTTCTTCAGGATGTCAAAAGAAGGAATGCACTTCCTCAGCAGAATTAG

Coding sequence (CDS)

ATGCTTCCTTCTGAACTCTTCTTCACCCTCCCAGCTATTACTCGGCAAACCAGCATTGCTCGTTTTTCAATCCCCTTTCCAGCTTCCCCTCCGGTAGCCTCTGCAGCCACCTTGAACCCATTCTTGATTATGCTACACACATTGCATTGTGGGATTGAACTACAGAGGTTTGAAGAGCCATTTAGGCCCAATGAACAACCCAGGGTTGTGCAATGGAACCTTAGGAGTTCGTTACCGTCTGCTATGCAACGTGGGTATTTCTTTGGAAGCTTGGTGGCTTTGGCTTTAATGGAATCCCTGTATTCCTCGAATTTCGAGATGGTTTTTGGAGTGTTCTGGACTTTAAGAATCCTTTCAATTTTGCAAATTGGGGTTTGCTTTTTTAGCCAGCTCGATTGGAATATGATTTCCACTATGTTCTTGCTTGTGTCTTCAGGACCAAGGATGGTAAGGTTAAGTACCTGCATGTCTAACACTCTGGTGAAGCTCCAAAGTTTCAGGTTTCATGAAGATCTCACCACATTCAGGACAAGGGCAAATGGCATTCCCCTGAAAGAGGAGGCTCCATTGGAGGAATTAGAAGAAGATGATGATGCAGATAATGATGAACATGTGGCTGATACAACTCCAGTTTGTTCATTCAAAGGAGGAGCTTTGCTGGATCTACTTGAACTTGAAGATTCATTGTTTCTGGAAGTCAAAACCCTTTTCTTGTACTTGCAACTGAATATGCCTTTAACAACAGCCCAAGACGGCGGCTTCGGTTTCTGGTTTTCATGGCTCTGTCTGCTGAGCTTTCTCTGTATTTTGGGTTTGGCCATGGCAGATGCCATTTCTTCACTGGAAAATCTGAAAAGGCAGGGAAGAAATTCAGGTCAAATAGTAAATGAAATGGGATTTTTTTGCTTTTCTTTTTTTCTTCAGGATGTCAAAAGAAGGAATGCACTTCCTCAGCAGAATTAG

Protein sequence

MLPSELFFTLPAITRQTSIARFSIPFPASPPVASAATLNPFLIMLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSSNFEMVFGVFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGPRMVRLSTCMSNTLVKLQSFRFHEDLTTFRTRANGIPLKEEAPLEELEEDDDADNDEHVADTTPVCSFKGGALLDLLELEDSLFLEVKTLFLYLQLNMPLTTAQDGGFGFWFSWLCLLSFLCILGLAMADAISSLENLKRQGRNSGQIVNEMGFFCFSFFLQDVKRRNALPQQN
Homology
BLAST of CaUC03G059350 vs. NCBI nr
Match: GER49216.1 (alanine--tRNA ligase [Striga asiatica])

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-12
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 45  LHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSSN 104
           LHT   G+   + ++P RPNE  RVVQWN RSSLPSA QRG FFG  VALALM S YSSN
Sbjct: 3   LHTPQLGLGPHKLDDPLRPNEHMRVVQWNRRSSLPSARQRGCFFGCRVALALMTSRYSSN 62

Query: 105 FEMVFG 111
            ++V G
Sbjct: 63  LDIVVG 68

BLAST of CaUC03G059350 vs. NCBI nr
Match: KAF5777652.1 (hypothetical protein HanXRQr2_Chr12g0538181 [Helianthus annuus])

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-09
Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 51  GIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSSNFEMVFG 110
           G+E  + ++P  P  QP VVQW  RSSLPSA QR       VA  L  S YSS   MV  
Sbjct: 9   GMEAHKLDDPCEPRGQPSVVQWKRRSSLPSAAQR---VAVAVARVLTASRYSSKRWMVRR 68

Query: 111 VFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGP 148
           V    RI S+++IG   F QLD N+ISTMF   SS P
Sbjct: 69  VLLIFRIRSMVKIGWSLFCQLDLNIISTMFRPESSSP 102

BLAST of CaUC03G059350 vs. NCBI nr
Match: GER53332.1 (crossover junction endodeoxyribonuclease RuvC [Striga asiatica])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-06
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 29  SPPVASAATLNPFLIMLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFF 88
           +P ++S    NPF I+  T H   ++QR +EPF  + Q RVV  NL SSLPSA QRG FF
Sbjct: 100 TPCLSSILPENPFRIIRQTEHFS-DVQRVDEPFVQSWQDRVVPKNLSSSLPSARQRGCFF 159

Query: 89  GSLVALALMESLYSS 104
           GSL+A    +S YSS
Sbjct: 160 GSLLAFDFTDSRYSS 173

BLAST of CaUC03G059350 vs. ExPASy TrEMBL
Match: A0A7C8YFV8 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 78/105 (74.29%), Postives = 84/105 (80.00%), Query Frame = 0

Query: 43  IMLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYS 102
           +MLHTL CG+ELQR +EPFRP E  +VV WNLRSSLPSAM    FFGS VA  L++SLYS
Sbjct: 1   MMLHTLQCGMELQRLDEPFRPREHIKVVLWNLRSSLPSAMHLECFFGSFVAFDLIKSLYS 60

Query: 103 SNFEMVFGVFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGP 148
           SN  MVF V WTLR LSI   GVCFFSQLDWNMISTMFLLVSSGP
Sbjct: 61  SNLLMVFWVLWTLRTLSIWHTGVCFFSQLDWNMISTMFLLVSSGP 105

BLAST of CaUC03G059350 vs. ExPASy TrEMBL
Match: A0A2P2NGS7 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 65/116 (56.03%), Postives = 75/116 (64.66%), Query Frame = 0

Query: 6   LFFTLPAITRQTSIARFSIPFPASPPVASAA---------------------TLNPFLIM 65
           LF TLPAIT QTSIA  S   P SP V++ +                     +L PFL+M
Sbjct: 2   LFLTLPAITLQTSIALLSPSTPRSPNVSALSCALPLVAVVKIPCPLTPRVVDSLKPFLMM 61

Query: 66  LHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESL 101
           LHTL CGIEL + ++PFRP+E   VVQWNLRSSLPSAMQRG F GSL+ALALM SL
Sbjct: 62  LHTLQCGIELHKLDDPFRPSEHANVVQWNLRSSLPSAMQRGCFLGSLLALALMVSL 117

BLAST of CaUC03G059350 vs. ExPASy TrEMBL
Match: A0A7C9AMD1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.6e-17
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 44  MLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSS 103
           M+ T   G EL R EEP  P E  +VVQWNL SSLPSA   G+F   L+A +L +SL SS
Sbjct: 1   MVQTPQPGTELHRLEEPRAPREHVKVVQWNLSSSLPSAAHLGFFLVLLLARSLTKSLQSS 60

Query: 104 NFEMVFGVFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGP 148
           N  MVF V WT  I SIL I   FF+QLD N+ISTM    SSGP
Sbjct: 61  NRWMVFCVLWTFNIRSILHIVRSFFNQLDLNIISTMLRPESSGP 104

BLAST of CaUC03G059350 vs. ExPASy TrEMBL
Match: A0A7C9APL8 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.6e-17
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 44  MLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSS 103
           M+ T   G EL R EEP  P E  +VVQWNL SSLPSA   G+F   L+A +L +SL SS
Sbjct: 1   MVQTPQPGTELHRLEEPRAPREHVKVVQWNLSSSLPSAAHLGFFLVLLLARSLTKSLQSS 60

Query: 104 NFEMVFGVFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGP 148
           N  MVF V WT  I SIL I   FF+QLD N+ISTM    SSGP
Sbjct: 61  NRWMVFCVLWTFNIRSILHIVRSFFNQLDLNIISTMLRPESSGP 104

BLAST of CaUC03G059350 vs. ExPASy TrEMBL
Match: A0A2P2IR80 (Uncharacterized protein LOC107435832 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-15
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 44  MLHTLHCGIELQRFEEPFRPNEQPRVVQWNLRSSLPSAMQRGYFFGSLVALALMESLYSS 103
           M+HT   GIE  + +EP  P+E  +VVQWN +SSLPSA   G+F     A     SL SS
Sbjct: 1   MVHTPQPGIERHKLDEPRAPSEHAKVVQWNRKSSLPSAAHLGFFLVLFSARVFTASLQSS 60

Query: 104 NFEMVFGVFWTLRILSILQIGVCFFSQLDWNMISTMFLLVSSGP 148
           N  +V  V WT  I SI+++ + F SQLD N+ISTMFL  SSGP
Sbjct: 61  NLWIVRCVLWTFSIRSIMKMVLSFLSQLDLNIISTMFLPESSGP 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GER49216.17.7e-1262.12alanine--tRNA ligase [Striga asiatica][more]
KAF5777652.18.0e-0948.45hypothetical protein HanXRQr2_Chr12g0538181 [Helianthus annuus][more]
GER53332.12.2e-0650.67crossover junction endodeoxyribonuclease RuvC [Striga asiatica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7C8YFV81.3e-3374.29Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A2P2NGS71.5e-2156.03Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A7C9AMD16.6e-1755.77Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9APL86.6e-1755.77Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A2P2IR804.7e-1550.00Uncharacterized protein LOC107435832 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G059350.1CaUC03G059350.1mRNA