CaUC03G059220 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G059220
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Protein FAR1-RELATED SEQUENCE 2-like
Location	Ciama_Chr03: 12624447 .. 12625254 (+)
RNA-Seq Expression	CaUC03G059220
Synteny	CaUC03G059220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTGTGTTTTTTAGGCTTATATTCCACCAGGTTCGTCCTTCCAACAATTTGTTGAATATATTCAAGGTAAATTTTTTTCCTTCAGGCGATCTTTCTATATCTCATTTGACAATGTACCGGACTGGTTCCAACAATTCGAGTCTTATTCATATTGTTCAAGATAAAGATGTTTTGTAGCTGATGTTAGGTTTATCAGACCTCCTCGAGAATGACTTATGTGTGGTGGTTGACCACGTATTTTCAAGTATTTTTTAAAATACATTGTATTTTAATAATGAGTTAGTGGTAACAAATCATTCTTCCCAACAATCTAATGGCAGTACTGAAATATTTGATTTCAAAGATTTTGAGTCTTTTCAATCTTGAAATTCCATTAAAGAAGGTTTACTTTTTAGGAGCAAATCTATATTGAAGAAAGCAGTTTATTTGCTTGCTGTCAATAATAGTTTTTGAACTTACTACCACTAGATCAAAACGTACTTCATTTGATATTTGTTGCAAGGGTTTGTCCTATGGTTCGTATTTGCTGCATCAGTATACAGTGGAGTGTGGATGGTTTGGAAATTCATGAATACCCATCAATGTGCTATTAACATTGTTAAAGATGGTCATAGGCAAGCGACATCTTGGATTGTTGTTGAGTGTACAGTCTTTTTTTACAATGAATGACAAGGTGTCATGTCGTCCTTCTGAAGTTGTTAGCGATATGAGAAGGCACCATGATGTAAATGTAAGTTATGACAAGACTTGGAGAGGCCGTGAAATTGCTCTCAATTCTATTAAGGGTACTCATAAGTCTTGA

mRNA sequence

ATGATTTTTGCTTATATTCCACCAGGTTCGTCCTTCCAACAATTTGTTGAATATATTCAAGGCGATCTTTCTATATCTCATTTGACAATGTACCGGACTGGTTCCAACAATTCGAGTCTTATTCATATTGTTCAAGATAAAGATCTGATGTTAGGTTTATCAGACCTCCTCGAGAATGACTTATGTGTGGTGGTTGACCACATGGTCATAGGCAAGCGACATCTTGGATTGTTGTTGAGTGTACAGTCTTTTTTTACAATGAATGACAAGGTGTCATGTCGTCCTTCTGAAGTTGTTAGCGATATGAGAAGGCACCATGATGTAAATGTAAGTTATGACAAGACTTGGAGAGGCCGTGAAATTGCTCTCAATTCTATTAAGGGTACTCATAAGTCTTGA

Coding sequence (CDS)

ATGATTTTTGCTTATATTCCACCAGGTTCGTCCTTCCAACAATTTGTTGAATATATTCAAGGCGATCTTTCTATATCTCATTTGACAATGTACCGGACTGGTTCCAACAATTCGAGTCTTATTCATATTGTTCAAGATAAAGATCTGATGTTAGGTTTATCAGACCTCCTCGAGAATGACTTATGTGTGGTGGTTGACCACATGGTCATAGGCAAGCGACATCTTGGATTGTTGTTGAGTGTACAGTCTTTTTTTACAATGAATGACAAGGTGTCATGTCGTCCTTCTGAAGTTGTTAGCGATATGAGAAGGCACCATGATGTAAATGTAAGTTATGACAAGACTTGGAGAGGCCGTGAAATTGCTCTCAATTCTATTAAGGGTACTCATAAGTCTTGA

Protein sequence

MIFAYIPPGSSFQQFVEYIQGDLSISHLTMYRTGSNNSSLIHIVQDKDLMLGLSDLLENDLCVVVDHMVIGKRHLGLLLSVQSFFTMNDKVSCRPSEVVSDMRRHHDVNVSYDKTWRGREIALNSIKGTHKS

Homology

[Close]

BLAST of CaUC03G059220 vs. NCBI nr
Match: KAA0033326.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 76/204 (37.25%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQG------DLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+ V  IQG      +LS+S LT+Y  G NNS+LI IV DK    LML
Sbjct: 25  VLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTVYWNGCNNSNLIRIVDDKYVSWLML 84

Query: 61  GLSDLLENDLCVVVD--------------------------------------HMVIGKR 120
            +S   +NDL VVVD                                      H  + + 
Sbjct: 85  VMSKFSDNDLLVVVDYVSASNIGNTPYLSSELLIAQDSRKETKIIDLNALESTHTALKEL 144

Query: 121 HLGLLL----------------------------SVQSFFTMNDKVSCRPSEVVSDMRRH 130
            LGL++                              +SFF MNDK SCRPS+V++ M+ H
Sbjct: 145 LLGLIVHCSIFGVKIRLAFGIDLLRQATSWIVFECTKSFFKMNDKASCRPSDVINYMKIH 204

[Close]

BLAST of CaUC03G059220 vs. NCBI nr
Match: KAA0042312.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 9.5e-17
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+   SSFQ+F   IQ       D+S+S LT+Y  G NN  LI IV DKD   +ML
Sbjct: 25  LLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTVYWKGCNNLKLIQIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQ---SFFTMNDKVSCRPSEVVSDMRRHHDV 120
            LS    NDL +VVD            LS +   +  + ++   C PS+V++ M+ HH V
Sbjct: 85  VLSKFPNNDLLIVVDTAPATDIENTPYLSSELPRTEDSRSENAPCHPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVSYDK WRGRE ALNSI+ T
Sbjct: 145 NVSYDKAWRGREFALNSIRVT 165

[Close]

BLAST of CaUC03G059220 vs. NCBI nr
Match: TYK23191.1 (uncharacterized protein E5676_scaffold142G002210 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 25  ISHLTMYRTGSNNSSLIHIVQDKD---LMLGLSDLLENDLCVVVDHMV---IGKRHLGLL 84
           I  LT+Y    NNS LI I+ DKD   +ML LS LL+NDL +VVD      IG       
Sbjct: 17  IPWLTLYWKDGNNSKLIRIMDDKDVSWIMLVLSKLLDNDLLIVVDTAPATDIGNTPYMSS 76

Query: 85  LSVQSFFTMNDKVSCRPSEVVSDMRRHHDVNVSYDKTWRGREIALNSIKGTH 131
              ++  +  +  SCRPS+V++ M+ HH VN+SYDK WRGREIALNSI+GT+
Sbjct: 77  EVPRTEDSRTENASCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTY 128

[Close]

BLAST of CaUC03G059220 vs. NCBI nr
Match: KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+F   IQ       ++S+S LT+Y    NNS+LI IV DKD   +ML
Sbjct: 25  LLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTVYWKDCNNSNLIRIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQSFFTMNDKVS---CRPSEVVSDMRRHHDV 120
            +S   +NDL VVV+ +          LS +   T +  +    CRPS+V++ M+ HH V
Sbjct: 85  VISKFPDNDLLVVVETVPATDIGNTPYLSSELPRTEDSHIENAPCRPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVS +K WRG EIALNSI+GT
Sbjct: 145 NVS-NKAWRGYEIALNSIRGT 164

[Close]

BLAST of CaUC03G059220 vs. NCBI nr
Match: TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+F   IQ       ++S+S LT+Y    NNS+LI IV DKD   +ML
Sbjct: 25  LLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTVYWKDCNNSNLIRIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQSFFTMNDKVS---CRPSEVVSDMRRHHDV 120
            +S   +NDL VVV+ +          LS +   T +  +    CRPS+V++ M+ HH V
Sbjct: 85  VISKFPDNDLLVVVETVPATDIGNTPYLSSELPRTEDSHIENAPCRPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVS +K WRG EIALNSI+GT
Sbjct: 145 NVS-NKAWRGYEIALNSIRGT 164

[Close]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL
Match: A0A5D3DDR3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00820 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 76/204 (37.25%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQG------DLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+ V  IQG      +LS+S LT+Y  G NNS+LI IV DK    LML
Sbjct: 25  VLAVYVPVSSSFQKLVNCIQGRIFPTSELSVSWLTVYWNGCNNSNLIRIVDDKYVSWLML 84

Query: 61  GLSDLLENDLCVVVD--------------------------------------HMVIGKR 120
            +S   +NDL VVVD                                      H  + + 
Sbjct: 85  VMSKFSDNDLLVVVDYVSASNIGNTPYLSSELLIAQDSRKETKIIDLNALESTHTALKEL 144

Query: 121 HLGLLL----------------------------SVQSFFTMNDKVSCRPSEVVSDMRRH 130
            LGL++                              +SFF MNDK SCRPS+V++ M+ H
Sbjct: 145 LLGLIVHCSIFGVKIRLAFGIDLLRQATSWIVFECTKSFFKMNDKASCRPSDVINYMKIH 204

[Close]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL
Match: A0A5A7TFW2 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001100 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+   SSFQ+F   IQ       D+S+S LT+Y  G NN  LI IV DKD   +ML
Sbjct: 25  LLDVYVLVSSSFQEFENCIQHRLFPNSDVSVSRLTVYWKGCNNLKLIQIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQ---SFFTMNDKVSCRPSEVVSDMRRHHDV 120
            LS    NDL +VVD            LS +   +  + ++   C PS+V++ M+ HH V
Sbjct: 85  VLSKFPNNDLLIVVDTAPATDIENTPYLSSELPRTEDSRSENAPCHPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVSYDK WRGRE ALNSI+ T
Sbjct: 145 NVSYDKAWRGREFALNSIRVT 165

[Close]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL
Match: A0A5D3DHP7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002210 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 25  ISHLTMYRTGSNNSSLIHIVQDKD---LMLGLSDLLENDLCVVVDHMV---IGKRHLGLL 84
           I  LT+Y    NNS LI I+ DKD   +ML LS LL+NDL +VVD      IG       
Sbjct: 17  IPWLTLYWKDGNNSKLIRIMDDKDVSWIMLVLSKLLDNDLLIVVDTAPATDIGNTPYMSS 76

Query: 85  LSVQSFFTMNDKVSCRPSEVVSDMRRHHDVNVSYDKTWRGREIALNSIKGTH 131
              ++  +  +  SCRPS+V++ M+ HH VN+SYDK WRGREIALNSI+GT+
Sbjct: 77  EVPRTEDSRTENASCRPSDVINYMKIHHGVNISYDKAWRGREIALNSIRGTY 128

[Close]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL
Match: A0A5D3CUZ6 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00480 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+F   IQ       ++S+S LT+Y    NNS+LI IV DKD   +ML
Sbjct: 25  LLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTVYWKDCNNSNLIRIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQSFFTMNDKVS---CRPSEVVSDMRRHHDV 120
            +S   +NDL VVV+ +          LS +   T +  +    CRPS+V++ M+ HH V
Sbjct: 85  VISKFPDNDLLVVVETVPATDIGNTPYLSSELPRTEDSHIENAPCRPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVS +K WRG EIALNSI+GT
Sbjct: 145 NVS-NKAWRGYEIALNSIRGT 164

[Close]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL
Match: A0A5A7TVA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00490 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 1   MIFAYIPPGSSFQQFVEYIQ------GDLSISHLTMYRTGSNNSSLIHIVQDKD---LML 60
           ++  Y+P  SSFQ+F   IQ       ++S+S LT+Y    NNS+LI IV DKD   +ML
Sbjct: 25  LLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTVYWKDCNNSNLIRIVDDKDVSWIML 84

Query: 61  GLSDLLENDLCVVVDHMVIGKRHLGLLLSVQSFFTMNDKVS---CRPSEVVSDMRRHHDV 120
            +S   +NDL VVV+ +          LS +   T +  +    CRPS+V++ M+ HH V
Sbjct: 85  VISKFPDNDLLVVVETVPATDIGNTPYLSSELPRTEDSHIENAPCRPSDVINYMKIHHGV 144

Query: 121 NVSYDKTWRGREIALNSIKGT 130
           NVS +K WRG EIALNSI+GT
Sbjct: 145 NVS-NKAWRGYEIALNSIRGT 164

The following BLAST results are available for this feature:

BLAST of CaUC03G059220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033326.1	1.2e-19	37.25	MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transpo...	[more]
KAA0042312.1	9.5e-17	43.26	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]
TYK23191.1	2.8e-16	49.11	uncharacterized protein E5676_scaffold142G002210 [Cucumis melo var. makuwa]	[more]
KAA0047392.1	8.1e-16	43.26	uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa]	[more]
TYK14069.1	8.1e-16	43.26	protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]	[more]

BLAST of CaUC03G059220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G059220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDR3	5.8e-20	37.25	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7TFW2	4.6e-17	43.26	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3DHP7	1.3e-16	49.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CUZ6	3.9e-16	43.26	Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7TVA6	3.9e-16	43.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CaUC03G059220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G059220.1	CaUC03G059220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding