CaUC03G058720 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G058720
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	BED-type domain-containing protein
Location	Ciama_Chr03: 11066548 .. 11066905 (-)
RNA-Seq Expression	CaUC03G058720
Synteny	CaUC03G058720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTCGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAACCGGTGTAAATTCTATATTCATATTAATTAGGAATAGCTAAGATCCCAGTAATTTAGTAAATTACTATGCATGTAACATTTCTGTTATGTGAGCCCGCTTAGCTCAGAGGTTAGAGCATCGCATTTGTAA

mRNA sequence

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGCTCAGAGGTTAGAGCATCGCATTTGTAA

Coding sequence (CDS)

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGCTCAGAGGTTAGAGCATCGCATTTGTAA

Protein sequence

MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEVRASHL

Homology

[Close]

BLAST of CaUC03G058720 vs. NCBI nr
Match: KAG0447283.1 (hypothetical protein HPP92_028386 [Vanilla planifolia])

HSP 1 Score: 110.9 bits (276), Expect = 4.3e-21
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG 60
          MIYFTGEVSGSSPGWPS A+++ KRIEEA DSFM A LGSGGYSSVGRAPLLQLGRCDYG
Sbjct: 1  MIYFTGEVSGSSPGWPSCARKRGKRIEEAFDSFMHASLGSGGYSSVGRAPLLQLGRCDYG 60

Query: 61 S 62
          +
Sbjct: 61 N 61

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BLAST of CaUC03G058720 vs. NCBI nr
Match: KAG6790056.1 (hypothetical protein POTOM_006202 [Populus tomentosa])

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG 60
           MI+FT +V  SS GWPS AKEKN RI+EASDSF+ APL S GYS VGRA  LQLGRCDYG
Sbjct: 58  MIHFTNDVFVSSLGWPSCAKEKN-RIKEASDSFIHAPLDSEGYSLVGRASFLQLGRCDYG 117

Query: 61  SEVRAS 67
            +V  S
Sbjct: 118 LDVLLS 122

[Close]

BLAST of CaUC03G058720 vs. NCBI nr
Match: KAG6773797.1 (hypothetical protein POTOM_021122 [Populus tomentosa])

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-12
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYG 60
           MIYFTGEV GSS GWPS AKE  K+I  A D F+ +PLGSGGY SVGRA LLQL  CDY 
Sbjct: 140 MIYFTGEVFGSSTGWPSRAKE--KKIMVAYDYFIHSPLGSGGYCSVGRALLLQLDCCDYK 199

Query: 61  SEV 64
            +V
Sbjct: 200 LDV 200

[Close]

BLAST of CaUC03G058720 vs. NCBI nr
Match: KAD4981694.1 (hypothetical protein E3N88_18365 [Mikania micrantha])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 29 KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 68

[Close]

BLAST of CaUC03G058720 vs. NCBI nr
Match: KZN08615.1 (hypothetical protein DCAR_001145 [Daucus carota subsp. sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 9  KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 48

[Close]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL
Match: A0A166G702 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001145 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 9  KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 48

[Close]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL
Match: A0A5N6NLK6 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18365 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 29 KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 68

[Close]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL
Match: A0A6N2KHV9 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS90436 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
           KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYGS +
Sbjct: 560 KRIEEASDSFIHAPLGSGGYSSVGRAPLLQLGRCDYGSSM 599

[Close]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL
Match: A0A6N2M157 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304396 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
           KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 423 KRIEEASDSFIHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 462

[Close]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL
Match: A0A6N2KFV3 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20797 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 24  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGSEV 64
           KRIEEASDSF+ APLGSGGYSSVGRAPLLQLGRCDYG +V
Sbjct: 440 KRIEEASDSFIHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 479

The following BLAST results are available for this feature:

BLAST of CaUC03G058720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG0447283.1	4.3e-21	85.25	hypothetical protein HPP92_028386 [Vanilla planifolia]	[more]
KAG6790056.1	6.6e-14	69.70	hypothetical protein POTOM_006202 [Populus tomentosa]	[more]
KAG6773797.1	4.8e-12	68.25	hypothetical protein POTOM_021122 [Populus tomentosa]	[more]
KAD4981694.1	3.1e-11	92.50	hypothetical protein E3N88_18365 [Mikania micrantha]	[more]
KZN08615.1	3.1e-11	92.50	hypothetical protein DCAR_001145 [Daucus carota subsp. sativus]	[more]

BLAST of CaUC03G058720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G058720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A166G702	1.5e-11	92.50	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001145 ...	[more]
A0A5N6NLK6	1.5e-11	92.50	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18365 PE=4 SV=1	[more]
A0A6N2KHV9	3.3e-11	90.00	Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS90436 PE=...	[more]
A0A6N2M157	4.3e-11	90.00	Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS304396 PE...	[more]
A0A6N2KFV3	4.3e-11	90.00	Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS20797 PE=...	[more]

BLAST of CaUC03G058720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G058720.1	CaUC03G058720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding