CaUC03G058220 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G058220
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtein TIC 214
LocationCiama_Chr03: 9777006 .. 9777447 (+)
RNA-Seq ExpressionCaUC03G058220
SyntenyCaUC03G058220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTTGATTACCCTCCAAACATATAGTTTGTAAATATTTTGATTTATTTAATTGTGTTTTAAAACATTTCTAAAAAATAATTTAAAAAATTTTAAAAACCCCAAGTAGAAGTTAAGTTTAAAAATAAAAAAATAAAAAATAAATAAAAAAAAATAAATTAAGAAAATCAATTTTGTTTTCTTCTAGGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA

mRNA sequence

ATGATAGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA

Coding sequence (CDS)

ATGATAGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA

Protein sequence

MIGVGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYAPLHLALGRLLTTLKQVVKTRLE
Homology
BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_010012103.1 (hypothetical chloroplast RF19 [Jeffersonia diphylla] >QOI12517.1 hypothetical chloroplast RF19 [Jeffersonia diphylla])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. NCBI nr
Match: QBZ77699.1 (hypothetical chloroplast RF1 [Plagiorhegma dubium])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_009500630.1 (conserved hypothetical protein ycf1 [Plagiorhegma dubium] >AWT58350.1 conserved hypothetical protein ycf1 [Plagiorhegma dubium])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_010036605.1 (Ycf1 protein [Kalanchoe fedtschenkoi] >QQW47147.1 Ycf1 protein [Kalanchoe fedtschenkoi] >QXI88515.1 hypothetical protein RF1 [Kalanchoe fedtschenkoi])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRA+VMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. NCBI nr
Match: QXI88685.1 (hypothetical protein RF1 [Kalanchoe longiflora])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRA+VMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A6MM95 (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV   +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A0A393 (Protein TIC 214 OS=Coffea arabica OX=13443 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV   +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A6MMQ5 (Protein TIC 214 OS=Dioscorea elephantipes OX=145284 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV   +GFLTTFSIGPSYLF LRARVMEEGTEK+VSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: Q09FQ2 (Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV   +GFLTTFSIGPSYLF LRARVMEEGTEK+VSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: Q09FY8 (Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV   +GFLTTFSIGPSYLF LRARVMEEGTEK+VSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKEVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A4D6E7N5 (Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A344A0U0 (Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A7M3UKU7 (Protein TIC 214 OS=Jeffersonia diphylla OX=46961 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRARVMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A7U0KLH2 (Ycf1 protein OS=Kalanchoe fedtschenkoi OX=63787 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRA+VMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A6B9R600 (Protein TIC 214 OS=Kalanchoe tomentosa OX=80922 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYA 63
          + + +VV F +GFLTTFSIGPSYLF LRA+VMEEGTEKKVSATT FITGQLMMFISIYYA
Sbjct: 19 INSVVVVGFYYGFLTTFSIGPSYLFLLRAQVMEEGTEKKVSATTGFITGQLMMFISIYYA 78

Query: 64 PLHLALGR 72
          PLHLALGR
Sbjct: 79 PLHLALGR 86

BLAST of CaUC03G058220 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVM---EEGTEKKVSATTSFITGQLMMFISI 63
          + + +VV   +GFLTTFSIGPSYLF LRARVM   EEGTEKKVSATT FI GQLMMFISI
Sbjct: 20 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISI 79

Query: 64 YYAPLHLALGR 72
          YYAPLHLALGR
Sbjct: 80 YYAPLHLALGR 90

BLAST of CaUC03G058220 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVM---EEGTEKKVSATTSFITGQLMMFISI 63
          + + +VV   +GFLTTFSIGPSYLF LRARVM   EEGTEKKVSATT FI GQLMMFISI
Sbjct: 20 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISI 79

Query: 64 YYAPLHLALGR 72
          YYAPLHLALGR
Sbjct: 80 YYAPLHLALGR 90

BLAST of CaUC03G058220 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVM---EEGTEKKVSATTSFITGQLMMFISI 63
          + + +VV   +GFLTTFSIGPSYLF LRARVM   EEGTEKKVSATT FI GQLMMFISI
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISI 78

Query: 64 YYAPLHLALGR 72
          YYAPLHLALGR
Sbjct: 79 YYAPLHLALGR 89

BLAST of CaUC03G058220 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-22
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 4  VGNCIVVFFNFGFLTTFSIGPSYLFPLRARVM---EEGTEKKVSATTSFITGQLMMFISI 63
          + + +VV   +GFLTTFSIGP YLF LRARVM   EEGTEKKVSATT FI GQLMMFISI
Sbjct: 19 INSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISI 78

Query: 64 YYAPLHLALGR 72
          YYAPLHLALGR
Sbjct: 79 YYAPLHLALGR 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_010012103.13.7e-2285.29hypothetical chloroplast RF19 [Jeffersonia diphylla] >QOI12517.1 hypothetical ch... [more]
QBZ77699.13.7e-2285.29hypothetical chloroplast RF1 [Plagiorhegma dubium][more]
YP_009500630.13.7e-2285.29conserved hypothetical protein ycf1 [Plagiorhegma dubium] >AWT58350.1 conserved ... [more]
YP_010036605.11.1e-2183.82Ycf1 protein [Kalanchoe fedtschenkoi] >QQW47147.1 Ycf1 protein [Kalanchoe fedtsc... [more]
QXI88685.11.1e-2183.82hypothetical protein RF1 [Kalanchoe longiflora][more]
Match NameE-valueIdentityDescription
A6MM952.4e-2483.82Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1[more]
A0A3932.4e-2483.82Protein TIC 214 OS=Coffea arabica OX=13443 GN=TIC214 PE=3 SV=1[more]
A6MMQ57.0e-2482.35Protein TIC 214 OS=Dioscorea elephantipes OX=145284 GN=TIC214 PE=3 SV=1[more]
Q09FQ27.0e-2482.35Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1[more]
Q09FY87.0e-2482.35Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A4D6E7N51.8e-2285.29Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1[more]
A0A344A0U01.8e-2285.29Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1[more]
A0A7M3UKU71.8e-2285.29Protein TIC 214 OS=Jeffersonia diphylla OX=46961 GN=ycf1 PE=3 SV=1[more]
A0A7U0KLH25.2e-2283.82Ycf1 protein OS=Kalanchoe fedtschenkoi OX=63787 GN=ycf1 PE=4 SV=1[more]
A0A6B9R6005.2e-2283.82Protein TIC 214 OS=Kalanchoe tomentosa OX=80922 GN=ycf1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG01130.12.7e-2378.87Ycf1 protein [more]
ATCG01000.12.7e-2378.87Ycf1 protein [more]
ATMG00370.12.7e-2378.87Ycf1 protein [more]
AT2G07739.11.4e-2277.46Ycf1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 8..72
e-value: 4.2E-35
score: 121.0
IPR008896Protein TIC214PANTHERPTHR33163PROTEIN TIC 214-RELATEDcoord: 7..75
NoneNo IPR availablePANTHERPTHR33163:SF32PHOTOSYSTEM I ASSEMBLY YCF1-LIKE PROTEINcoord: 7..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G058220.1CaUC03G058220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane