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CaUC03G058220 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAGTTGATTACCCTCCAAACATATAGTTTGTAAATATTTTGATTTATTTAATTGTGTTTTAAAACATTTCTAAAAAATAATTTAAAAAATTTTAAAAACCCCAAGTAGAAGTTAAGTTTAAAAATAAAAAAATAAAAAATAAATAAAAAAAAATAAATTAAGAAAATCAATTTTGTTTTCTTCTAGGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA ATGATAGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA ATGATAGGAGTTGGTAATTGTATTGTTGTGTTTTTCAACTTTGGATTTCTTACCACATTCTCCATAGGGCCCTCTTATCTCTTCCCTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAAGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCGATTGGAATAA MIGVGNCIVVFFNFGFLTTFSIGPSYLFPLRARVMEEGTEKKVSATTSFITGQLMMFISIYYAPLHLALGRLLTTLKQVVKTRLE Homology
BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_010012103.1 (hypothetical chloroplast RF19 [Jeffersonia diphylla] >QOI12517.1 hypothetical chloroplast RF19 [Jeffersonia diphylla]) HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. NCBI nr
Match: QBZ77699.1 (hypothetical chloroplast RF1 [Plagiorhegma dubium]) HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_009500630.1 (conserved hypothetical protein ycf1 [Plagiorhegma dubium] >AWT58350.1 conserved hypothetical protein ycf1 [Plagiorhegma dubium]) HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. NCBI nr
Match: YP_010036605.1 (Ycf1 protein [Kalanchoe fedtschenkoi] >QQW47147.1 Ycf1 protein [Kalanchoe fedtschenkoi] >QXI88515.1 hypothetical protein RF1 [Kalanchoe fedtschenkoi]) HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21 Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. NCBI nr
Match: QXI88685.1 (hypothetical protein RF1 [Kalanchoe longiflora]) HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21 Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A6MM95 (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24 Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A0A393 (Protein TIC 214 OS=Coffea arabica OX=13443 GN=TIC214 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24 Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: A6MMQ5 (Protein TIC 214 OS=Dioscorea elephantipes OX=145284 GN=TIC214 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24 Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: Q09FQ2 (Protein TIC 214 OS=Nandina domestica OX=41776 GN=TIC214 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24 Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy Swiss-Prot
Match: Q09FY8 (Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 7.0e-24 Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A4D6E7N5 (Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A344A0U0 (Protein TIC 214 OS=Plagiorhegma dubium OX=168834 GN=ycf1 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A7M3UKU7 (Protein TIC 214 OS=Jeffersonia diphylla OX=46961 GN=ycf1 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A7U0KLH2 (Ycf1 protein OS=Kalanchoe fedtschenkoi OX=63787 GN=ycf1 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22 Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. ExPASy TrEMBL
Match: A0A6B9R600 (Protein TIC 214 OS=Kalanchoe tomentosa OX=80922 GN=ycf1 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22 Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of CaUC03G058220 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein ) HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23 Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0
BLAST of CaUC03G058220 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein ) HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23 Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0
BLAST of CaUC03G058220 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein ) HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23 Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0
BLAST of CaUC03G058220 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein ) HSP 1 Score: 102.8 bits (255), Expect = 1.4e-22 Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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