CaUC03G056600 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G056600
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Ciama_Chr03: 7341570 .. 7342097 (+)
RNA-Seq Expression	CaUC03G056600
Synteny	CaUC03G056600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGCGCTGAGTCGGTACGAGTCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTACCTGAAGAACCAAACGCCGCCGGTTCCGCTGTCACAGTGTAATTGCAACCACGTTTTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCCCTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTGAGAGCAGCCTACGAGGAGCACGGCGGATCACCCGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGCCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAAAGAAAAAGAACTCAATTGAAATCCAACGACGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

mRNA sequence

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGCGCTGAGTCGGTACGAGTCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTACCTGAAGAACCAAACGCCGCCGGTTCCGCTGTCACAGTGTAATTGCAACCACGTTTTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCCCTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTGAGAGCAGCCTACGAGGAGCACGGCGGATCACCCGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGCCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAAAGAAAAAGAACTCAATTGAAATCCAACGACGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

Coding sequence (CDS)

ATGTCAACCGAAGCGAGAAAAGATTCGACGGAAGCCGCCGGGTCATCGTCGAGGACGGCGGCGCTGAGTCGGTACGAGTCACAAAAAAGGCGTGACTGGAACACGTTCGGACAGTACCTGAAGAACCAAACGCCGCCGGTTCCGCTGTCACAGTGTAATTGCAACCACGTTTTGGAATTCCTGAGGTACCTGGACCAGTTCGGAAAAACTAAGGTTCATTTACATGGGTGTGTTTTTTTCGGGCAGCCTGACCCACCTGCCCCTTGTACCTGCCCCCTCCGTCAAGCATGGGGAAGTCTCGACGCTCTGATCGGACGGCTGAGAGCAGCCTACGAGGAGCACGGCGGATCACCCGAAACAAATCCTTTTGGAAATGGAGCAATTCGAGTGTATTTGAGGGAAGTGAAGGAGTGCCAAGCTAAAGCAAGAGGAATTCCGTACAAGAAAAAGAAAAGAAAAAGAACTCAATTGAAATCCAACGACGATGACAACAACAACAACAAACAACCCATCAAGCATCTCCCTTGA

Protein sequence

MSTEARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNNKQPIKHLP

Homology

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BLAST of CaUC03G056600 vs. NCBI nr
Match: XP_038896042.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida] >XP_038896043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 346.3 bits (887), Expect = 1.6e-91
Identity = 172/184 (93.48%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRTA-----ALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60
           MSTE RKDST  AGSSSRTA     ALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN
Sbjct: 1   MSTEGRKDSTTEAGSSSRTAAGTTTALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD----NNNNKQPI 176
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNINNNNKQPI 180

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BLAST of CaUC03G056600 vs. NCBI nr
Match: XP_008465553.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016903415.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90
Identity = 172/183 (93.99%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR-----TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60
           MSTEARKD TE AGSSSR     TAALSRYESQKRRDWNTFGQYLKNQTPPV LSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD---NNNNKQPIK 176
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD   NNNNKQPIK
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNKQPIK 180

[Close]

BLAST of CaUC03G056600 vs. NCBI nr
Match: KAA0057039.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.0e-90
Identity = 172/184 (93.48%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR-----TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60
           MSTEARKD TE AGSSSR     TAALSRYESQKRRDWNTFGQYLKNQTPPV LSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD----NNNNKQPI 176
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNKQPI 180

[Close]

BLAST of CaUC03G056600 vs. NCBI nr
Match: XP_011657745.2 (LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-85
Identity = 167/192 (86.98%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR--------TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQC 60
           MS+E RKD TE AGSSSR        TAALSRYESQKRRDWNTFGQYLKNQTP V LSQC
Sbjct: 1   MSSEGRKDPTE-AGSSSRTTTTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQC 60

Query: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAW SLDALIGRLRAAYE
Sbjct: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWXSLDALIGRLRAAYE 120

Query: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNN----- 176
           EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD NNN     
Sbjct: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNT 180

[Close]

BLAST of CaUC03G056600 vs. NCBI nr
Match: XP_031737260.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >KAE8653217.1 hypothetical protein Csa_020024 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84
Identity = 162/177 (91.53%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR--------TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQC 60
           MS+E RKD TE AGSSSR        TAALSRYESQKRRDWNTFGQYLKNQTP V LSQC
Sbjct: 1   MSSEGRKDPTE-AGSSSRTTTTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQC 60

Query: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNNKQ 170
           EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD NNNKQ
Sbjct: 121 EHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNKQ 176

[Close]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 120/151 (79.47%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRY 63
           E  K   E++GS       SRYESQKRRDWNTFGQYLKNQ PPVP+S C+CNHVL+FLRY
Sbjct: 6   ERGKSLMESSGSEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRY 65

Query: 64  LDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPF 123
           LDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF
Sbjct: 66  LDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPF 125

Query: 124 GNGAIRVYLREVKECQAKARGIPYKKKKRKR 155
            +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 ASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 109/136 (80.15%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 22  LSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 81
           LSRYESQKRRDWNTF QYLK+Q PP+ +SQ +  HVL FLRYLDQFGKTKVH   CVFFG
Sbjct: 35  LSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFG 94

Query: 82  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREVKECQA 141
           QPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV+E QA
Sbjct: 95  QPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQA 154

Query: 142 KARGIPYKKKKRKRTQ 157
           KARGIPY+KKKR++T+
Sbjct: 155 KARGIPYRKKKRRKTK 170

[Close]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-60
Identity = 110/153 (71.90%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 2   STEARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFL 61
           +T     S+ ++   S T  LSRYE+QKRRDWNTFGQYL+N  PP+ LS+C+  HVLEFL
Sbjct: 26  TTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

Query: 62  RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETN 121
           RYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSPETN
Sbjct: 86  RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETN 145

Query: 122 PFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 155
           PFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 146 PFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-59
Identity = 105/146 (71.92%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 21  ALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFF 80
           ALSRYESQKRRDWNTF QYL+NQ PPV +SQC  NH+L+FL+YLDQFGKTKVH+HGCVFF
Sbjct: 37  ALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFF 96

Query: 81  GQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQA 140
           GQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG PE NPF  G IRV+LREV++ QA
Sbjct: 97  GQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQA 156

Query: 141 KARGIPYK--KKKRKRTQLKSNDDDN 165
           KARG+PYK  KK++KR  +KS+D ++
Sbjct: 157 KARGVPYKKRKKRKKRNPMKSHDGED 182

[Close]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-59
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 19  TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCV 78
           TA  SRYESQKRRDW TFGQYL+N  PP+ LS+C+  HVLEFLRYLDQFGKTKVH HGC 
Sbjct: 18  TARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGCP 77

Query: 79  FFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKEC 138
           FFG P PPAPC CPLRQAWGSLDAL+GRLRAA+EEHGG PE+NPFG  A+R+YLR++++ 
Sbjct: 78  FFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDT 137

Query: 139 QAKARGIPYKKKKRKR 155
           Q+KARGI Y+KK+RKR
Sbjct: 138 QSKARGIAYEKKRRKR 153

[Close]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL
Match: A0A1S4E614 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503180 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 172/183 (93.99%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR-----TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60
           MSTEARKD TE AGSSSR     TAALSRYESQKRRDWNTFGQYLKNQTPPV LSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD---NNNNKQPIK 176
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD   NNNNKQPIK
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNKQPIK 180

[Close]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL
Match: A0A5A7UU18 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002260 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 172/184 (93.48%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR-----TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCN 60
           MSTEARKD TE AGSSSR     TAALSRYESQKRRDWNTFGQYLKNQTPPV LSQCNCN
Sbjct: 1   MSTEARKDPTE-AGSSSRTTTTTTAALSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCN 60

Query: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120
           HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG
Sbjct: 61  HVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD----NNNNKQPI 176
           GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD    NNNNKQPI
Sbjct: 121 GSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNNKQPI 180

[Close]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL
Match: A0A0A0M097 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 169/187 (90.37%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR----TAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNH 60
           MSTE RKD TE AGSSSR    TAALSRYESQKRRDWNTFGQYLKNQTP V LSQCNCNH
Sbjct: 1   MSTEGRKDPTE-AGSSSRATTTTAALSRYESQKRRDWNTFGQYLKNQTPAVSLSQCNCNH 60

Query: 61  VLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG 120
           VLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG
Sbjct: 61  VLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG 120

Query: 121 SPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNN--------K 176
           SPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDD NNN        K
Sbjct: 121 SPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINNNNNNTNSNSK 180

[Close]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL
Match: A0A6J1CET4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 GN=LOC111010841 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 160/185 (86.49%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSR----------TAALSRYESQKRRDWNTFGQYLKNQTPPVPLS 60
           MSTEARKDSTEAAGSSS           T ALSRYESQKRRDWNTFGQYLKNQTPPV LS
Sbjct: 1   MSTEARKDSTEAAGSSSSMRPGAAADHPTTALSRYESQKRRDWNTFGQYLKNQTPPVALS 60

Query: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           QCNCNHVLEFLRYLDQFGKTKVHL GCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLPGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDNNNNKQP 176
           YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR QLK N+DD+ ++K  
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKPNNDDHQDHK-- 180

[Close]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL
Match: A0A6J1GSW5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457135 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 160/193 (82.90%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MSTEARKDSTEAAGSSSRT-----------AALSRYESQKRRDWNTFGQYLKNQTPPVPL 60
           MST+ RKDSTE AGSSS T           AALSRYESQKRRDWNTFGQYLKNQ PPVPL
Sbjct: 1   MSTQPRKDSTE-AGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPL 60

Query: 61  SQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA 120
            +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  FECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDD------- 175
           AYEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD       
Sbjct: 121 AYEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGG 180

[Close]

BLAST of CaUC03G056600 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 257.3 bits (656), Expect = 8.9e-69
Identity = 120/151 (79.47%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRY 63
           E  K   E++GS       SRYESQKRRDWNTFGQYLKNQ PPVP+S C+CNHVL+FLRY
Sbjct: 6   ERGKSLMESSGSEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRY 65

Query: 64  LDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPF 123
           LDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF
Sbjct: 66  LDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPF 125

Query: 124 GNGAIRVYLREVKECQAKARGIPYKKKKRKR 155
            +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 ASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC03G056600 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 257.3 bits (656), Expect = 8.9e-69
Identity = 120/151 (79.47%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 4   EARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRY 63
           E  K   E++GS       SRYESQKRRDWNTFGQYLKNQ PPVP+S C+CNHVL+FLRY
Sbjct: 6   ERGKSLMESSGSEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRY 65

Query: 64  LDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPF 123
           LDQFGKTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF
Sbjct: 66  LDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPF 125

Query: 124 GNGAIRVYLREVKECQAKARGIPYKKKKRKR 155
            +GAIRVYLREV+ECQAKARGIPYKKKK+K+
Sbjct: 126 ASGAIRVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of CaUC03G056600 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 234.2 bits (596), Expect = 8.1e-62
Identity = 109/136 (80.15%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 22  LSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 81
           LSRYESQKRRDWNTF QYLK+Q PP+ +SQ +  HVL FLRYLDQFGKTKVH   CVFFG
Sbjct: 35  LSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFG 94

Query: 82  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH-GGSPETNPFGNGAIRVYLREVKECQA 141
           QPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH GGSP+TNPF NG+IRV+LREV+E QA
Sbjct: 95  QPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQA 154

Query: 142 KARGIPYKKKKRKRTQ 157
           KARGIPY+KKKR++T+
Sbjct: 155 KARGIPYRKKKRRKTK 170

[Close]

BLAST of CaUC03G056600 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-61
Identity = 110/153 (71.90%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 2   STEARKDSTEAAGSSSRTAALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFL 61
           +T     S+ ++   S T  LSRYE+QKRRDWNTFGQYL+N  PP+ LS+C+  HVLEFL
Sbjct: 26  TTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

Query: 62  RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETN 121
           RYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSPETN
Sbjct: 86  RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETN 145

Query: 122 PFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 155
           PFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 146 PFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of CaUC03G056600 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-60
Identity = 105/146 (71.92%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 21  ALSRYESQKRRDWNTFGQYLKNQTPPVPLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFF 80
           ALSRYESQKRRDWNTF QYL+NQ PPV +SQC  NH+L+FL+YLDQFGKTKVH+HGCVFF
Sbjct: 37  ALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFF 96

Query: 81  GQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQA 140
           GQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG PE NPF  G IRV+LREV++ QA
Sbjct: 97  GQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQA 156

Query: 141 KARGIPYK--KKKRKRTQLKSNDDDN 165
           KARG+PYK  KK++KR  +KS+D ++
Sbjct: 157 KARGVPYKKRKKRKKRNPMKSHDGED 182

The following BLAST results are available for this feature:

BLAST of CaUC03G056600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896042.1	1.6e-91	93.48	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida] >XP_0388960...	[more]
XP_008465553.1	3.8e-90	93.99	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
KAA0057039.1	5.0e-90	93.48	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]	[more]
XP_011657745.2	2.2e-85	86.98	LOW QUALITY PROTEIN: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativu...	[more]
XP_031737260.1	2.4e-84	91.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis sativus] >KAE8653217.1...	[more]

BLAST of CaUC03G056600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	1.3e-67	79.47	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9SN52	1.1e-60	80.15	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	2.5e-60	71.90	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9ZVA0	2.1e-59	71.92	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
B8AIK3	6.2e-59	75.00	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]

BLAST of CaUC03G056600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E614	1.9e-90	93.99	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UU18	2.4e-90	93.48	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0M097	1.5e-87	90.37	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G474480 PE=3 S...	[more]
A0A6J1CET4	2.9e-83	86.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1GSW5	2.9e-83	82.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CaUC03G056600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	8.9e-69	79.47	Protein of unknown function (DUF640)	[more]
AT2G42610.2	8.9e-69	79.47	Protein of unknown function (DUF640)	[more]
AT4G18610.1	8.1e-62	80.15	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-61	71.90	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.5e-60	71.92	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 17..137 e-value: 6.2E-64 score: 213.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 24..151 score: 79.178192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..175
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 10..167
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 10..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G056600.1	CaUC03G056600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus