CaUC03G055500 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G055500
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionWound-responsive family protein
LocationCiama_Chr03: 5998696 .. 6002075 (+)
RNA-Seq ExpressionCaUC03G055500
SyntenyCaUC03G055500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTAGATTTTACAAGGGCGAGATCAACGGGATGAAAGATCCAACGGTGAAGCGTGAGCTGATGTTGAAGGGGCTGAGAGATCATCAATATTCGGGATCATCTTCGAATCAGGCGGCGGCAGTGGCGGCCAAGGCGGAGCAACTTAAACGGGCGGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGCCCTAACTAAACGTCGTCGTCTTTATTTCCACACAGTCAAGCATATCTCTCAACGTCAAAGCTACGGTTTTCTCAGATTAGATTAGTGACCCTCTGAAATGTGAATAATCATTAATCCACCTACTTCATTTGCAACAAAACGGTAGAGCGACGTCGTTTTGAATGTATAAATGTAAATATGCGCTAGATGTTTTGTTTCCCCAGTTTCCTACCTCTGGGAGCTGTTCCATCAATAAAACTTCTCTTGTATAATTGCTGTCATATGTCAAATATATGAATGTTTTTATTTTCTCGAACAGATTTAGGTATGTTCATTTTTGGTTGACCTGATCGCAATTACTTTGTTAAAACTCTCTTAAGAAAATTTAATGCCAAATTTTGATTGTTTTAATCATTTACAAATACAAAGGCTTTAACATCCGTTGGGCATTTGTACACGTTATGGGTTAATTTAGACCAAGGGACAAAGAACAACGTAAAAGAAACAACGGAAGAAGCTTTGGGCTAGAAGATAAGGTCTGGGAGAGAGAGAAGTGGCATGGGCTGAAGCACATGTCACAAGGCTCGACATTAATGGCCCAAGCTGAGGCTAACGTAGAAACATGGCCACAAAGGGTGCCACGCAGGAGGTCCAGCCCAAGGAAAAGATTTAGGTCAAACAACACTAACAACACTAAACCTTGTAAGAAACATAAAATTTCTCTACTTCCTATGTTGTTTCTCCTGCTAAGTCTATGTGGCAAGTACCAATGTTTGTAAAGGAAAAAGTTCTCGGGTCCTTTTCTTTTTGGTGGTTCTTTAATTTGGTCCTAAACTTCAAGTTTGTGCGAGCCCATGTTGAATTTCGTGTCACTAATAAATTGTATTTGATACATTCTTAAAATTGCAAAAATCAATTTTTATGTCTACCTAAACAAATGGGTGTATCCAAAGTTTTAGTAATTATCTTAGAGAAGATGACGTGGAATTAACTTTTAAAAAATTATTTTATTTTATAAAATTTTAAAATAAGGCCTACCTTTTTCATTTTGTTTCTCTTTCCTTCTCCGTCTTCTTCTTCCTCTTCAATTCTGGTTGATGATGTCAAACTTTTTTCTCCTTTCTTTTTTCTTTTTTCTTCCCGTGCTTAAAACAACACACTAGAATTAGGAAGATCTCGTTCCAATAAGGAGCACCTACTACAACCATATTAAAAAAAGAGTAGGTTGTGATTCTATTAATACACATACTATAGTCGTGGACATATAAGTGTCACTTGTCAGGCAAAGTTGACTGTCGAAAGAAGTGTCATGATGTGACTAAAGAAGATGATAAATCTTCTATTAGATTAAAATAAGAGTGGTCATGAAAGTCTCACAAGTAAGATTAGAAATGATAGTATCGTTGATGTTGTAAATGACATGTTTAGTGGAGACTAAACGGTGCCTTAACCACAACTTTGAAAGTGCAGGATGCATCGAGTAGTTTCAACAAGTGACTTTAAAGTTAGATGCATATTGATGTGATATGTGTAATCATGTAAAATTTCATAATAGAAGATTGGGTAGTGCTCTTAGAGTGACTCTTCCCACTTGCCATGTGCAAGGGAGACATAAAAATAGCTCAAAATGTATTGTAGGGGAAAACCATGGTATAAGCTCTCCACTAACATTAGGCCTCAATGACCTAAGTTAGCTACCCTCAGCCAGCATCGCAAAACAAGTGTTCTTAGTTGTTTTCTGTTGATAATGTGAACTCATGGATAGTGTCAACATTGAACCCCATCCTATGGGTCAAAAATTTCGGTACAGCCTTGAGCTAGAGCTTGGTATGTATAAATGACTTGGCATGGATTATCAAACTATATAGTACAAGAAAAATGGTTTCCGCCGACGCCACAAAAAAATTCGGAGAAAGGTCCTAATGTCGATACCTACCATGGTGTCAACATAGCTTAGAAATCATGACACCACATTTAGGTGGTGTTGAGATAGTTAGCCTATTCTGATGTCAAAAACGTGACGTCGGGTTAAGTGCATGTAATATTAATTTATGTTATATAACTAAATTATCTTTAAACTAAGAAATAAGAAGGAAAAAGCTAAAATTAAAAAAATATATATATAAGGAATGAAAAATGAACTAGTTATCAAATAAGTTTATGTTTCTATTTGTTTTTTTTTTTAAAAAAAACAAGAAATAAAAATAATTAACAAATATATTTTTATTTCAAATTATTAAAAAACAAGAAACAAGAAATGAGAATATTATAAGATGAGACTTAGATTTTCATGAAGATGAGAACACACATGTTCAAATAGATGGATGCGCAATCTCAATTCTTCATAGTATTATACTTAGTTTTGTTCGTATTTTTTCAAAGTTTTGTTGGCCTTCTTCTAGTATGTTGTCTAAAAATATAATAATAAATAATTTAAAGATAGAATTAAGTTTGAAGAACTAAATTTGGGATTCAGTGTGAGAAATAAAAAATAAAACCAAAATACCCGGGTAGTAAAATTCCATAATATAGCACAAAAAATATAGTTATATAAATAAATTAATAAAAGAAAAGATAAAATCATTGTTATATATTGTAATATGTTAACATGGGTTAAAATAACACAAGGGGTTGGTGCAGGGTATCTGACCTGCATTTCAGACAAATGCTTCCCCCTTCTGCCATTAATCCAATAAAAAAATAAAAAAAAATAAAAAAAAAAATAAAAAGAAAATCAGCCAATGGTAATAGATACAAAACCAGGGATTTTAAAGAATGGTATATTATTAATTCTTCGATAATCCCAAAACCAGTCTTCCTATCCTTAAACTGAACTCATTTGTGTTTATTCAGGTCAGAAAGCAAAGGAAGCTGGAAAAGAAACAGAATTCCCCTTATCCACAGTTTAACAAGTTGAAGCTGTGAGAGATGAGTTGAGAATGGAGGGAAAAATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGGCTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTGA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAACGGGATGAAAGATCCAACGGTGAAGCGTGAGCTGATGTTGAAGGGGCTGAGAGATCATCAATATTCGGGATCATCTTCGAATCAGGCGGCGGCAGTGGCGGCCAAGGCGGAGCAACTTAAACGGGCGGAGGAGTCTCTCAGAACGGTTATACCAAGGGACAAAGAACAACGTAAAAGAAACAACGGAAGAAGCTTTGGGCTAGAAGATAAGGTCTGGGAGAGAGAGAAGTGGCATGGGCTGAAGCACATGTCACAAGGCTCGACATTAATGGCCCAAGCTGAGGCTAACGTAGAAACATGGCCACAAAGGGTGCCACGCAGGAGGTCCAGCCCAAGGAAAAGATTTAGGTCAAACAACACTAACAACACTAAACCTTTTGAAGCTGTGAGAGATGAGTTGAGAATGGAGGGAAAAATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGGCTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTGA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAACGGGATGAAAGATCCAACGGTGAAGCGTGAGCTGATGTTGAAGGGGCTGAGAGATCATCAATATTCGGGATCATCTTCGAATCAGGCGGCGGCAGTGGCGGCCAAGGCGGAGCAACTTAAACGGGCGGAGGAGTCTCTCAGAACGGTTATACCAAGGGACAAAGAACAACGTAAAAGAAACAACGGAAGAAGCTTTGGGCTAGAAGATAAGGTCTGGGAGAGAGAGAAGTGGCATGGGCTGAAGCACATGTCACAAGGCTCGACATTAATGGCCCAAGCTGAGGCTAACGTAGAAACATGGCCACAAAGGGTGCCACGCAGGAGGTCCAGCCCAAGGAAAAGATTTAGGTCAAACAACACTAACAACACTAAACCTTTTGAAGCTGTGAGAGATGAGTTGAGAATGGAGGGAAAAATGAGCTATTTGAGGCGAGCTTGGATGGGTGCGGCGGGTGTGAGTGTGCTTGAAACTGCCCACGCCAATGATCAATTCTCCAAATGGAATTCTTCAGAGGCTGTTTTTCAGTCGAAGCTGCGGCGGTTTCAGAATGAGGAGACGGCGGCGGAAGTTGGCGGTGATGGAAAAGAAGATAGGGGAAAGGAGATGAAGACTGAAGATTCTCTTCATAAAGTCATGTACTTGAATTGTTGGACACAAAGCTGA

Protein sequence

MSRRFYKGEINGMKDPTVKRELMLKGLRDHQYSGSSSNQAAAVAAKAEQLKRAEESLRTVIPRDKEQRKRNNGRSFGLEDKVWEREKWHGLKHMSQGSTLMAQAEANVETWPQRVPRRRSSPRKRFRSNNTNNTKPFEAVRDELRMEGKMSYLRRAWMGAAGVSVLETAHANDQFSKWNSSEAVFQSKLRRFQNEETAAEVGGDGKEDRGKEMKTEDSLHKVMYLNCWTQS
Homology
[Close]
BLAST of CaUC03G055500 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-31
Identity = 117/246 (47.56%), Postives = 133/246 (54.07%), Query Frame = 0 

Query: 1   MSRRFYKGEINGMKDPTVKRELMLKGLRDHQYSGSSSNQ-----------AAAVAAKAEQ 60
           MSRRFYKGEI+GMKDPT KRE MLK +RDH  SGSSSNQ           +AA+AAKAE+
Sbjct: 1   MSRRFYKGEISGMKDPTAKREAMLKAVRDH--SGSSSNQGARGFYSGMDSSAAMAAKAEK 60

Query: 61  LKRAEESLRTVIPRDKEQRKRNNGRSFGLEDKVWEREKWHGLKHMSQGSTLMAQAEANVE 120
           LKRAEESLR  I       ++  GRS     K  ER    G                 VE
Sbjct: 61  LKRAEESLRKFI-------RKMVGRS----KKRIERRGHKG-----------------VE 120

Query: 121 TWPQRVPRRRSSPRKRFRSNNTNNTKPFEAVRDELRMEGKMSYLRRAWMGAAGVSVLETA 180
            W  R              N     K             KMSYL RA M AA V+V+E  
Sbjct: 121 DWQNR--------------NQEEGRK-------------KMSYLSRACMAAASVAVVEGG 180

Query: 181 HANDQFSKWNSSEAVFQSKLRRFQNEETAAEVGGDGKEDRGKE----MKTEDSLHKVMYL 232
           HA D FSKWN SE +F+SK RRFQNE+TA++  G G    GK+    +K EDSLHKVMYL
Sbjct: 181 HA-DHFSKWN-SETLFRSK-RRFQNEDTASQELGAGSTGIGKDGEKVVKAEDSLHKVMYL 186

[Close]
BLAST of CaUC03G055500 vs. NCBI nr
Match: KAG7019648.1 (hypothetical protein SDJN02_18611, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-15
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 150 MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSEAVFQSKLRRFQNEETAAEVGGDGKEDR 209
           MSYL RA M AA V+V+E  HA D FSKWN SE +F+SK RRFQNE+TA++  G G    
Sbjct: 1   MSYLSRACMAAASVAVVEGGHA-DHFSKWN-SETLFRSK-RRFQNEDTASQELGAGSTGI 60

Query: 210 GKE----MKTEDSLHKVMYLNCWTQS 232
           GK+    +K EDSLHKVMYLNCWTQS
Sbjct: 61  GKDGEKVVKAEDSLHKVMYLNCWTQS 83

[Close]
BLAST of CaUC03G055500 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-13
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 1  MSRRFYKGEINGMKDPTVKRELMLKGLRDHQYSGSSSNQ-----------AAAVAAKAEQ 60
          MSRRFYKGEI+GMKDPT KRE MLK +RDH  SGSSSNQ           +AA+AAKAE+
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDH--SGSSSNQGARGFYSGMDSSAAMAAKAEK 60

Query: 61 LKRAEESLRTVI 62
          LKRAEESLRTV+
Sbjct: 61 LKRAEESLRTVM 70

[Close]
BLAST of CaUC03G055500 vs. NCBI nr
Match: KAA0056938.1 (hypothetical protein E6C27_scaffold96G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-08
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 0 

Query: 158 MGAAGVSVLETAHANDQ---FSKWNS---SEAVFQSKLRRFQ--NEETAAEV-------- 217
           MGAA V V+E++HAN+    FSKWN+    ++VFQSKL  FQ  +E  AA+         
Sbjct: 1   MGAASVGVMESSHANNDQYFFSKWNNYFDDQSVFQSKLLSFQQNDEGKAAQKLGARSSSH 60

Query: 218 -----------GGDGKEDRGKEM-KTEDSLHKVMYLNCWTQS 232
                      GG G    GK++ + EDSLHKVMYLNCWTQS
Sbjct: 61  KYGKDGGGGGGGGGGGGGGGKDIDRAEDSLHKVMYLNCWTQS 102

[Close]
BLAST of CaUC03G055500 vs. ExPASy TrEMBL
Match: A0A0A0LS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-12
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 150 MSYLRRAWMGAAGVSVLETAHA-NDQFSKWNSSEAVFQSKLRRFQNE---ETAAEVG--- 209
           MSYLRRAWMGAA V V+E+++A NDQ+        VFQSKL++FQ     + A E+G   
Sbjct: 1   MSYLRRAWMGAASVGVMESSYASNDQY-------FVFQSKLQQFQQNGEGKAAQELGARS 60

Query: 210 -----GDGKED--RGKEM-KTEDSLHKVMYLNCWTQS 232
                G G E   RGKE+ + EDSLHKVMYLNCWTQS
Sbjct: 61  SFHKYGKGGEGGRRGKEIHRAEDSLHKVMYLNCWTQS 90

[Close]
BLAST of CaUC03G055500 vs. ExPASy TrEMBL
Match: A0A5A7UPA3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001150 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 0 

Query: 158 MGAAGVSVLETAHANDQ---FSKWNS---SEAVFQSKLRRFQ--NEETAAEV-------- 217
           MGAA V V+E++HAN+    FSKWN+    ++VFQSKL  FQ  +E  AA+         
Sbjct: 1   MGAASVGVMESSHANNDQYFFSKWNNYFDDQSVFQSKLLSFQQNDEGKAAQKLGARSSSH 60

Query: 218 -----------GGDGKEDRGKEM-KTEDSLHKVMYLNCWTQS 232
                      GG G    GK++ + EDSLHKVMYLNCWTQS
Sbjct: 61  KYGKDGGGGGGGGGGGGGGGKDIDRAEDSLHKVMYLNCWTQS 102

[Close]
BLAST of CaUC03G055500 vs. ExPASy TrEMBL
Match: A0A0A0LV05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071850 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-04
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 13 MKDPTVKRELMLKG-LRDH--------QYSGSSSNQAA--AVAAKAEQLKRAEESLRTVI 62
          MKDPT+K+E ML+G LRDH         +S SSSNQ A   V +KAEQLKRAEESLRTV+
Sbjct: 1  MKDPTLKQEPMLEGPLRDHHHHHHRRRHHSESSSNQTAVPVVLSKAEQLKRAEESLRTVM 60

[Close]
BLAST of CaUC03G055500 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.0e-04
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 0 

Query: 150 MSYLRRAWMGAAGVSVLETAHANDQFSKWNSSEAVFQSKLRRFQNEETAAEVGGDG--KE 209
           MSYL + WM A+ V+V   A    +     +S    Q +L        AA++ GD    E
Sbjct: 1   MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSSDLRPLAAADLTGDSLPSE 60

Query: 210 DRGKEMKT--EDSLHKVMYLNCWTQ 231
           +R +   +  ++SL +VMYLNCW Q
Sbjct: 61  ERRRTSSSTPDESLRQVMYLNCWAQ 85

The following BLAST results are available for this feature:
BLAST of CaUC03G055500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584036.11.8e-3147.56hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019648.15.4e-1562.79hypothetical protein SDJN02_18611, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7019649.16.6e-1369.44hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0056938.14.9e-0846.08hypothetical protein E6C27_scaffold96G001150 [Cucumis melo var. makuwa][more]
BLAST of CaUC03G055500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G055500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS844.6e-1254.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071860 PE=4 SV=1[more]
A0A5A7UPA32.4e-0846.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LV057.8e-0461.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071850 PE=4 SV=1[more]
BLAST of CaUC03G055500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28240.12.0e-0434.12Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 168..230
e-value: 1.0E-7
score: 32.9
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 150..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..134
NoneNo IPR availablePANTHERPTHR33090:SF38DUF3774 DOMAIN PROTEINcoord: 150..231

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G055500.1CaUC03G055500.1mRNA