CaUC03G053550 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G053550
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	Ciama_Chr03: 4105887 .. 4107172 (+)
RNA-Seq Expression	CaUC03G053550
Synteny	CaUC03G053550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCAACTTCATCTCTCACGGAGTTCTTCTCCTCCCTCTCAATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTACAAATTTTCAATCTCTTCCAAAGTCTAAACCAGCTCGGTTGTTTGCCACCAGGGACTCAGTTACGCCTTCTTCCCAAGAACCCAAGGGTGTTTTTACAGGCATATTAAATTACAATGTTCTGATCACCGTGGGCGAGAACGAGTCTGAAGACCAAGTGGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCAGGGATCTTGCAGGAATGTAAGAGGAGAAGATTTTTTGAAAATAGCCAAGCGAAGATAAAGAGGAAAGCTAGAGAAGCTGCTAAGAGGAACCGTAAGAGGTTAGTCGATGATCTCATTTCTAAAGCAAAATCAGATGAGTTGTTCATGGCTGCATTTGGTTTCTGTGTGATTTTGTTACTCTGAATCTTCTTTCTTCTTCACTATGGTTGAATGGTCTGTTTTCTTTCATTTTCTGGGCAACCAAACGGTGGGTTTCGATGTCAACTTCATAACTGTGTTCCTATTTCAAGTGCTCAATCCAAACCTTGGGGTTCCTTGATCCACTAGCACCACCATTGTTACCGTTGACATTTTCTAAAACTCAGAAGCCGGCCTCAGATTGATCAATATCAATTCAAAGAATTAGTCTATCAAAACTTCTTCCATTTTAGTAGGAGAGAGAAACAGAGGATAGTGAAGATAATTCAATTAAGTAAAAGTTATCATCAAAATGAAACTAGATTGTTCAAAAATATCTGAAATCAGCTGTGAAGAAACATCTTGAATTGAAAGATGCTGCTTAGCTACAAGGTGACCCATGATTAGTATTAAGATTGTTGGTTAATAAGATCACTTCCATGGTTATTGTGACTTTTGTATTTAGAGAACAATCTTTTCAGCTCTGATTTGAATTGTCTAGATAATTCTGATGCAAGGAAGTAAACTTTATATGATGCCCCCATGAAATCATAATATCAAACATTGAGATTTCAATGTTTATTCAGATGTGCTCTTCTCCAATTGCAGATGGTTTAGGAGGCCTCAATCAAGTGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAGAAGCTCACTGCCTTAGTTGGAACCAATATCTGTAATTGATGAGAAAAATTATTAGATAATTAGTTTATTTTAATATTTAGTTTAGTTG

mRNA sequence

ATGGCCGCCGCCGCAACTTCATCTCTCACGGAGTTCTTCTCCTCCCTCTCAATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTACAAATTTTCAATCTCTTCCAAAGTCTAAACCAGCTCGGTTGTTTGCCACCAGGGACTCAGTTACGCCTTCTTCCCAAGAACCCAAGGGTGTTTTTACAGGCATATTAAATTACAATGTTCTGATCACCGTGGGCGAGAACGAGTCTGAAGACCAAGTGGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCAGGGATCTTGCAGGAATGTAAGAGGAGAAGATTTTTTGAAAATAGCCAAGCGAAGATAAAGAGGAAAGCTAGAGAAGCTGCTAAGAGGAACCGTAAGAGGTTAGTCGATGATCTCATTTCTAAAGCAAAATCAGATGAGTTGTTCATGGCTGCATTTGGTTTCTGTGTGATTTTCTCTGATTTGAATTGTCTAGATAATTCTGATGCAAGGAAATGGTTTAGGAGGCCTCAATCAAGTGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAGAAGCTCACTGCCTTAGTTGGAACCAATATCTGTAATTGATGAGAAAAATTATTAGATAATTAGTTTATTTTAATATTTAGTTTAGTTG

Coding sequence (CDS)

ATGGCCGCCGCCGCAACTTCATCTCTCACGGAGTTCTTCTCCTCCCTCTCAATCTCGAAATCATCACAAATACACCATAACTCCGTCTCTACAAATTTTCAATCTCTTCCAAAGTCTAAACCAGCTCGGTTGTTTGCCACCAGGGACTCAGTTACGCCTTCTTCCCAAGAACCCAAGGGTGTTTTTACAGGCATATTAAATTACAATGTTCTGATCACCGTGGGCGAGAACGAGTCTGAAGACCAAGTGGTGAATCGGTTCAGGAGGCAGGTCTTGAGAGCAGGGATCTTGCAGGAATGTAAGAGGAGAAGATTTTTTGAAAATAGCCAAGCGAAGATAAAGAGGAAAGCTAGAGAAGCTGCTAAGAGGAACCGTAAGAGGTTAGTCGATGATCTCATTTCTAAAGCAAAATCAGATGAGTTGTTCATGGCTGCATTTGGTTTCTGTGTGATTTTCTCTGATTTGAATTGTCTAGATAATTCTGATGCAAGGAAATGGTTTAGGAGGCCTCAATCAAGTGCTGAGGAGCAGTCAAAACAGGAAACCCCTCAGAGGAAGAAGAATAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG

Protein sequence

MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKGVFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREAAKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPYCS

Homology

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BLAST of CaUC03G053550 vs. NCBI nr
Match: TYJ99226.1 (putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 4.4e-69
Identity = 160/219 (73.06%), Postives = 175/219 (79.91%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDL--------NCLDNSDA----RKWFR 180
           AKRNRKRL  DLISKAKSDE FMA FGF ++   +        NC D  ++       FR
Sbjct: 121 AKRNRKRLA-DLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFR 180

Query: 181 RPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           RPQS+ E+Q  ++TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 RPQSTTEKQPDKKTPE-SKNKDEEDDNWDFYQVDLPYSS 217

[Close]

BLAST of CaUC03G053550 vs. NCBI nr
Match: KAA0055302.1 (Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 1.7e-68
Identity = 159/219 (72.60%), Postives = 174/219 (79.45%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDL--------NCLDNSDA----RKWFR 180
           AKRNRKRL  DLISK KSDE FMA FGF ++   +        NC D  ++       FR
Sbjct: 121 AKRNRKRLA-DLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFR 180

Query: 181 RPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           RPQS+ E+Q  ++TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 RPQSTTEKQPDKKTPE-SKNKDEEDDNWDFYQVDLPYSS 217

[Close]

BLAST of CaUC03G053550 vs. NCBI nr
Match: XP_038894121.1 (30S ribosomal protein S21, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-66
Identity = 153/207 (73.91%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSSLT+FFSSLSISKSSQIHHNSVS N QSLPKSKPARLFATR SVTPSSQEPKG
Sbjct: 1   MAAAATSSLTKFFSSLSISKSSQIHHNSVSINLQSLPKSKPARLFATRGSVTPSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           VF+G+  YNVLITVGENESEDQ+VNRFRRQVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VFSGMRIYNVLITVGENESEDQLVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                      WFRRPQS AEEQ  +
Sbjct: 121 AKRNRKR--------------------------------------WFRRPQSRAEEQPNK 168

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           +TPQR KNRDEEDDNWDFYQVDLPYCS
Sbjct: 181 KTPQR-KNRDEEDDNWDFYQVDLPYCS 168

[Close]

BLAST of CaUC03G053550 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-57
Identity = 140/207 (67.63%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                       FRRPQS+ E+Q  +
Sbjct: 121 AKRNRKRR--------------------------------------FRRPQSTTEKQPDK 168

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           +TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 KTPE-SKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of CaUC03G053550 vs. NCBI nr
Match: XP_004152510.2 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_014065 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 5.6e-56
Identity = 139/205 (67.80%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS N QSLP SK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V   ILNYN+LITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                       FRRPQS   EQ  Q
Sbjct: 121 AKRNRKRR--------------------------------------FRRPQSITGEQPDQ 166

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPY 206
           +TP+  KNRDEEDDNWDFYQVDLPY
Sbjct: 181 KTPE-SKNRDEEDDNWDFYQVDLPY 166

[Close]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 70/220 (31.82%), Postives = 100/220 (45.45%), Query Frame = 0


Query: 4   AATSSLTEFFSSLSISKSSQ--------IHHNSVST--NFQSLPKSKPARLFATRDSVTP 63
           A+TSSL  F S L  S +S          + NS+S+  N  S+   K       +    P
Sbjct: 2   ASTSSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKKEEYP 61

Query: 64  SSQE----PKGVFTGIL----NYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRF 123
                   P   F+  L     YNV + V +NE+E++++NRFRR+V+RAG++QECKRRR+
Sbjct: 62  GDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKRRRY 121

Query: 124 FENSQAKIKRKAREAAKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARK 183
           FEN Q + KRK REAAKRN +R                                    R 
Sbjct: 122 FENKQEEKKRKHREAAKRNSRR-----------------------------------RRG 180

Query: 184 WFRRPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPY 206
            FR P    EE +K +       ++++ DNWD  +   P+
Sbjct: 182 PFRGPFPGKEEATKVD------KKEDDGDNWDMPEGGAPF 180

[Close]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot
Match: Q8RB59 (30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsU PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.7e-05
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREAAKRNRK 127
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   K K+KA  A KR  K
Sbjct: 4   VRVGENESLDSALRRFRRQCSKAGVLSELRKREHYESPSVKRKKKAEAARKRKYK 58

[Close]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot
Match: Q7NHA1 (30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rpsU2 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.0e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREAAKRNR 126
           + +GENES +  + RF++++ +AGIL E KRR  +E   A+ KRKA  A KR R
Sbjct: 4   VRLGENESIESALKRFKKKIQKAGILSEIKRRERYEKPSARRKRKAEAARKRRR 57

[Close]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot
Match: Q2JM43 (30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREAAKRNRKR 128
           +T+GENE  +  + RF+RQV +AGIL++ +  R FE +  K KRKA  A +RNR++
Sbjct: 4   VTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAVRRNRRK 58

[Close]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot
Match: B0KA63 (30S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREAAKRNRK 127
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   K K+K+  A KR  K
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKRKKKSEAARKRKYK 58

[Close]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL
Match: A0A5D3BJF5 (Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004370 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.1e-69
Identity = 160/219 (73.06%), Postives = 175/219 (79.91%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDL--------NCLDNSDA----RKWFR 180
           AKRNRKRL  DLISKAKSDE FMA FGF ++   +        NC D  ++       FR
Sbjct: 121 AKRNRKRLA-DLISKAKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFR 180

Query: 181 RPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           RPQS+ E+Q  ++TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 RPQSTTEKQPDKKTPE-SKNKDEEDDNWDFYQVDLPYSS 217

[Close]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL
Match: A0A5A7UHJ6 (Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001450 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 8.2e-69
Identity = 159/219 (72.60%), Postives = 174/219 (79.45%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDL--------NCLDNSDA----RKWFR 180
           AKRNRKRL  DLISK KSDE FMA FGF ++   +        NC D  ++       FR
Sbjct: 121 AKRNRKRLA-DLISKEKSDEFFMAEFGFYLLLLRVVLLAANIPNCCDLIESVLTLLGRFR 180

Query: 181 RPQSSAEEQSKQETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           RPQS+ E+Q  ++TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 RPQSTTEKQPDKKTPE-SKNKDEEDDNWDFYQVDLPYSS 217

[Close]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL
Match: E5GBW8 (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 5.0e-58
Identity = 140/207 (67.63%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                       FRRPQS+ E+Q  +
Sbjct: 121 AKRNRKRR--------------------------------------FRRPQSTTEKQPDK 168

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           +TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 KTPE-SKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL
Match: A0A1S3AZ70 (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 5.0e-58
Identity = 140/207 (67.63%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS NFQSLPKSK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V + ILNYNVLITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                       FRRPQS+ E+Q  +
Sbjct: 121 AKRNRKRR--------------------------------------FRRPQSTTEKQPDK 168

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPYCS 208
           +TP+  KN+DEEDDNWDFYQVDLPY S
Sbjct: 181 KTPE-SKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL
Match: A0A0A0LWJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.7e-56
Identity = 139/205 (67.80%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPARLFATRDSVTPSSQEPKG 60
           MAAAATSS+T FFS LSISKSSQIHHNSVS N QSLP SK  RLFA+R +V  SSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKIKRKAREA 120
           V   ILNYN+LITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAK KRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDARKWFRRPQSSAEEQSKQ 180
           AKRNRKR                                       FRRPQS   EQ  Q
Sbjct: 121 AKRNRKRR--------------------------------------FRRPQSITGEQPDQ 166

Query: 181 ETPQRKKNRDEEDDNWDFYQVDLPY 206
           +TP+  KNRDEEDDNWDFYQVDLPY
Sbjct: 181 KTPE-SKNRDEEDDNWDFYQVDLPY 166

[Close]

BLAST of CaUC03G053550 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 69/224 (30.80%), Postives = 106/224 (47.32%), Query Frame = 0


Query: 4   AATSSLTEFFSSLSISKS-----------------SQIHHNSVSTNFQSLPKSKPARLFA 63
           AA+ SLT F S +S  KS                 SQ   N ++   +S+   + +   +
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLA--IESMAVEETSSTAS 61

Query: 64  TRDSVTPSSQEPKGVFTGIL----NYNVLITVGENESEDQVVNRFRRQVLRAGILQECKR 123
           +  S   S   P   ++  L     YNV + V +NESE+++VNRFRR+V+R G++QECKR
Sbjct: 62  SLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKR 121

Query: 124 RRFFENSQAKIKRKAREAAKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSD 183
           RR+FEN Q + KR+ R+AAKRN+K                                    
Sbjct: 122 RRYFENKQDEKKRRTRDAAKRNKK------------------------------------ 181

Query: 184 ARKWFRRPQSSAEEQSKQE--TPQRKKNRDEEDDNWDFYQVDLP 205
                RRPQ+   +++++E     + K +DEE+DNW+    D+P
Sbjct: 182 -----RRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDVP 182

[Close]

BLAST of CaUC03G053550 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10
Identity = 58/143 (40.56%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPAR-----------LFATRD 60
           MA  +  SL+E  SSL  SK      +  S    +LP S  AR           L A  D
Sbjct: 1   MALESIVSLSELLSSLLSSKPP----SPSSLKPITLPSSVSARTSQHLSMTTKILTAEHD 60

Query: 61  SVT-----PSSQEPKGVFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRR 120
            V      PS      VF     YNV +   + ESE+Q+VN F+R   RAG+LQE +RRR
Sbjct: 61  DVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRR 120

Query: 121 FFENSQAKIKRKAREAAKRNRKR 128
           FFE+S  K  RK +EAAK+ RKR
Sbjct: 121 FFESSLEKKTRKTKEAAKKYRKR 139

[Close]

BLAST of CaUC03G053550 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 70/226 (30.97%), Postives = 93/226 (41.15%), Query Frame = 0


Query: 1   MAAAATSSLTEFFSSLSISKSSQIHHNSVSTNFQSLPKSKPAR-----------LFATRD 60
           MA  +  SL+E  SSL  SK      +  S    +LP S  AR           L A  D
Sbjct: 1   MALESIVSLSELLSSLLSSKPP----SPSSLKPITLPSSVSARTSQHLSMTTKILTAEHD 60

Query: 61  SVT-----PSSQEPKGVFTGILNYNVLITVGENESEDQVVNRFRRQVLRAGILQECKRRR 120
            V      PS      VF     YNV +   + ESE+Q+VN F+R   RAG+LQE +RRR
Sbjct: 61  DVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRR 120

Query: 121 FFENSQAKIKRKAREAAKRNRKRLVDDLISKAKSDELFMAAFGFCVIFSDLNCLDNSDAR 180
           FFE+S  K  RK +EAAK+ RK                                      
Sbjct: 121 FFESSLEKKTRKTKEAAKKYRK-------------------------------------- 180

Query: 181 KWFRRPQSSAEEQSKQETPQRKKN---RDEEDDNWDF--YQVDLPY 206
              RRP    +  S  E  +  +N    DE+DD+W+     +++PY
Sbjct: 181 ---RRPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPEDIEIPY 181

The following BLAST results are available for this feature:

BLAST of CaUC03G053550 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99226.1	4.4e-69	73.06	putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]	[more]
KAA0055302.1	1.7e-68	72.60	Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038894121.1	1.2e-66	73.91	30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]	[more]
XP_008439325.1	1.0e-57	67.63	PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc...	[more]
XP_004152510.2	5.6e-56	67.80	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypotheti...	[more]

BLAST of CaUC03G053550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	3.4e-11	31.82	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
Q8RB59	4.7e-05	47.27	30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
Q7NHA1	8.0e-05	46.30	30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 74...	[more]
Q2JM43	1.0e-04	46.43	30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32133...	[more]
B0KA63	1.0e-04	45.45	30S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33...	[more]

BLAST of CaUC03G053550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJF5	2.1e-69	73.06	Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UHJ6	8.2e-69	72.60	Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
E5GBW8	5.0e-58	67.63	Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV...	[more]
A0A1S3AZ70	5.0e-58	67.63	uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=...	[more]
A0A0A0LWJ6	2.7e-56	67.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1	[more]

BLAST of CaUC03G053550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	1.5e-14	30.80	Ribosomal protein S21 family protein	[more]
AT5G63300.2	2.9e-10	40.56	Ribosomal protein S21 family protein	[more]
AT5G63300.1	2.1e-08	30.97	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 73..81 score: 47.22 coord: 93..103 score: 44.7 coord: 105..115 score: 35.61 coord: 81..90 score: 35.0
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 71..127 e-value: 3.6E-13 score: 47.1
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 72..125 e-value: 5.0E-15 score: 55.0
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 61..205
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 69..125 score: 13.824368
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 85..122 e-value: 2.8E-10 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..194
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 61..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G053550.1	CaUC03G053550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome