CaUC03G053520 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G053520
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RING-type domain-containing protein
Location	Ciama_Chr03: 4083134 .. 4085732 (-)
RNA-Seq Expression	CaUC03G053520
Synteny	CaUC03G053520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATACAGAATCATTTAACCACAGTCTGTAAGCTAGAGGTTTGAATTTTCAAAGAAATACAGAAGAGAAGACTCAGTCTCTTTCTCTGACAGTTAAATAATAGACCATTTTTCCCGGAAAAAGCCTCTATGGACTGTGGGATACATAAAGAAACAATATTCATATTCTTTTCTTTGATCATATTCATCCGTGTGGCTCTTTGGCATTGCATTGACAACAACAATTTCAAACAGAGAGGATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAAAGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTGTGAGCTCCTCTTTCTCTGATTTATTTATTTATTTTATTTTTGTTTTATTTTATTTTTACATTTTTCTTTTCTGAGTTCTTTATGGTTGATTGGTTGATGTCATGTCTTTTGGGGCTCTCTCTGAACCTTGGTTATAGCATCTTTTGTTGTGGGATTTTGTAACCCATTGCAAAAGTTTCATATGTTGTAATTTACTTTACAAGTTAATGATACGCCTCGTTTTTCATGTCCTTTAAAGTTAATGGAAATGTGACTGGCAAGAGTTGCCAAGGTTTGCCTTTATGGTGTTCTGGTTTTGAAGAGGAGAAAACAAAGTTAAGATCTTCTCTGCTTCGTTCGTATGAAATGTTATTGCTTAAAAAGAGGACTAAAAAGTAGTTTTGAAACATTTTAGAGGTATCCTTCAAAATTTTTGAGTCAATCCCATCTTAAAATCTCAATAAATTATGATCCTCATGGTCGTAAGTCGACTTTGGAGTAGGTGAAGCCTCTCCGGAGTTAGTAAGGTGGGCTACGAGCATAATGCAAGTAGCTGAGGTCTCGATAACCCGGTTATAAAAAAAAGTTATTTGAGGATAAAAGTTAATAGCAGCTCCCCTTCAGTTTCTCAATTGTTTCTAATAGAAACTAGATGTTTGCTGTCATAATAGTCAGTTCTGGAGTTTATGTTAGTTCAAATATTGGAATGAAGCGATTGTCTTATATTGAAATATCTTTATATGATGCAGTGCAGCTTCATTTCCAAGAGGCAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTCATTCTTTACTTGCTTCAATGGGTGGATTGCTCATGTTCATATCTATCTTTGAGTTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGAGCAAGTTGACCAAGAAGTTCTAAAAGTATTTGATATAAATTAGATTTACCATAATCCACCTATTTAAACTTTTAAGTTGATTGGTGATTTAACATGGTACCACAGTAGAAAATTATGTGTTTGAACCCTTGTAATGTCATTTACTCCTCTAACAAGTTTCAAACTCACAATTGACAAAGTGTTAAAGTATTTAATATAATTAAATTTGGCAAATTCAACAACTTAAGCTTTTAGGTTGATCGGTGATTTAACAAGAAGAAAAAAAGATAAAAGGGTAAAAGAAGAGAATAATGAAGTTTGATAATTTGTGTTAATCTACAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTGTACGTGATCTATCTTTTCTGCTCCTTTATTTATCTTTATTGTTTTAAAGTTCTTTGAAGGTTGTGATATGTCAAGCAAAAAATTAGAATGTGCCTTTGCTCTGGCAAGTTTCTTTTGTACATCAGTTGAAAACAATCATCCTCATGTATCTATTCTCTTCTGGAAAAGAGTTGTGGCAAACGGCTAACAATGTGCTTGCATATTGTTGTACGGTTAAAATAACCAGAAAACTTCAGTTCTTTTGTACTTCACAGTTTAAGATGATATTAATTCTCTTTAACATGAATGCAGCTGTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGTATTACTATTGAAGGCTTCACTCTTATGTCCACGTTTTTGACTCACTATATTCTTTATGGCTGAATGTACTATTAGAGAAAAAAAAAAAAAAAACCTTTGATGCTCCTTTCCCTGATCTGTTACAGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAACAAACCAAATGATTAGAACATTGTACATTGGAGGACTATTGCTAATTATCCACAAATTTGAAGGGTTGGTTTTCGTTCTGATATCGGCTCTCGTTCTGTTTGACATTTGGAATGCTGCATGCGTTCA

mRNA sequence

TATACAGAATCATTTAACCACAGTCTGTAAGCTAGAGGTTTGAATTTTCAAAGAAATACAGAAGAGAAGACTCAGTCTCTTTCTCTGACAGTTAAATAATAGACCATTTTTCCCGGAAAAAGCCTCTATGGACTGTGGGATACATAAAGAAACAATATTCATATTCTTTTCTTTGATCATATTCATCCGTGTGGCTCTTTGGCATTGCATTGACAACAACAATTTCAAACAGAGAGGATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAAAGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTGTGAAGCCTCTCCGGAGTTAGTAAGGTGGGCTACGAGCATAATGCAAGTAGCTGAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTCTGTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAACAAACCAAATGATTAGAACATTGTACATTGGAGGACTATTGCTAATTATCCACAAATTTGAAGGGTTGGTTTTCGTTCTGATATCGGCTCTCGTTCTGTTTGACATTTGGAATGCTGCATGCGTTCA

Coding sequence (CDS)

ATGGACTGTGGGATACATAAAGAAACAATATTCATATTCTTTTCTTTGATCATATTCATCCGTGTGGCTCTTTGGCATTGCATTGACAACAACAATTTCAAACAGAGAGGATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAAAGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTGTGAAGCCTCTCCGGAGTTAGTAAGGTGGGCTACGAGCATAATGCAAGTAGCTGAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTCTGTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAA

Protein sequence

MDCGIHKETIFIFFSLIIFIRVALWHCIDNNNFKQRGCWIVIRGFLLAILTKISLSFLKLIFAMPMLCEASPELVRWATSIMQVAEVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL

Homology

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BLAST of CaUC03G053520 vs. NCBI nr
Match: XP_031737753.1 (E3 ubiquitin-protein ligase AIRP2 isoform X1 [Cucumis sativus])

HSP 1 Score: 421.4 bits (1082), Expect = 5.5e-114
Identity = 215/289 (74.39%), Postives = 229/289 (79.24%), Query Frame = 0


Query: 1   MDCGIHKETIF-IFFSLIIFIRVALWHCIDNNNFKQRGCWIVIRGFLLAILTKISLSFLK 60
           MDCG+ KETIF  FF LIIFIRVALWHCIDNNNFKQRGCWIVIRGFLLAILT ISLSFLK
Sbjct: 1   MDCGLQKETIFKFFFYLIIFIRVALWHCIDNNNFKQRGCWIVIRGFLLAILTMISLSFLK 60

Query: 61  LIFAMPMLC------------------EASP---ELVRWATSI-------------MQVA 120
           LIFAMPML                     +P    L++W                 + + 
Sbjct: 61  LIFAMPMLSSFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFHIVLY 120

Query: 121 EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 180
           +VDF GRPDISSY RKATISEFYSVILPSL+RLCDYASQ++SIED HKGMAISKRLEHKR
Sbjct: 121 KVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKR 180

Query: 181 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 240
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 181 EFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 240

Query: 241 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDVVD  TIMKEDMLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 241 DLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 289

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BLAST of CaUC03G053520 vs. NCBI nr
Match: KAA0055299.1 (RING-H2 finger protein ATL47-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-85
Identity = 152/169 (89.94%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSLQRLCDYASQV+SIED HKGM ISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMVISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDV+DT T+MKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLTCGNDVIDTCTVMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. NCBI nr
Match: XP_016901782.1 (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo] >TYJ99223.1 RING-H2 finger protein ATL47-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-85
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSLQRLCDYASQV+SIED HKGMAISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMAISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDV+DT T++KEDMLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLTCGNDVIDTCTVIKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. NCBI nr
Match: XP_011651953.1 (E3 ubiquitin-protein ligase AIRP2 isoform X2 [Cucumis sativus] >KGN64372.1 hypothetical protein Csa_013044 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.0e-83
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSL+RLCDYASQ++SIED HKGMAISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDVVD  TIMKEDMLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 205 DLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. NCBI nr
Match: XP_022137104.1 (uncharacterized protein LOC111008662 [Momordica charantia])

HSP 1 Score: 308.1 bits (788), Expect = 6.8e-80
Identity = 145/169 (85.80%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +V  DGRPDISS  +KATISEFYSVILPSLQRLCDYASQVD IED   GMAISKRLEHK+
Sbjct: 85  KVHSDGRPDISSCGKKATISEFYSVILPSLQRLCDYASQVDRIEDLRTGMAISKRLEHKK 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           +LL++D EREDECGIC+E  TKIVLPHCCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 KLLEVDTEREDECGICMEPRTKIVLPHCCHAMCTSCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVL CSNDVVDT T MKEDMLRFYLFIN+LPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLMCSNDVVDTRTXMKEDMLRFYLFINSLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. ExPASy Swiss-Prot
Match: Q9M022 (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.1e-35
Identity = 71/165 (43.03%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 90  DGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLE-----HK 149
           DG+  +S + RK +I EFY V+ PSL +L      +  +E+  +     KR        K
Sbjct: 76  DGKTTMSLHERKTSIREFYDVLFPSLLQL---HGGITDVEERKQKEICDKRYRKKDRTDK 135

Query: 150 RELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVAS 209
            ++ ++D+ERE+ECGICLE   K+VLP C H++C  CY +W+++S+SCPFCRGSLKRV S
Sbjct: 136 GKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRVNS 195

Query: 210 GDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMY 250
           GDLW+ TCS ++ D   I KE++ R  ++I+ LP  T D   + Y
Sbjct: 196 GDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPY 237

[Close]

BLAST of CaUC03G053520 vs. ExPASy Swiss-Prot
Match: Q95216 (Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-04
Identity = 32/125 (25.60%), Postives = 50/125 (40.00%), Query Frame = 0


Query: 87  VDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMA---------I 146
           V  +G+  I  Y  + T+   Y+ +L  L RL         + +               +
Sbjct: 678 VKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNTVSSSGPSGNDTPEEL 737

Query: 147 SKRLEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSE---SCPF 200
            K+L  K +L+ L    ++EC ICL+S T  V+ HC H  C  C        +    CP 
Sbjct: 738 RKKLIKKMKLI-LSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPL 797

[Close]

BLAST of CaUC03G053520 vs. ExPASy Swiss-Prot
Match: Q14527 (Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.7e-04
Identity = 35/122 (28.69%), Postives = 52/122 (42.62%), Query Frame = 0


Query: 90  DGRPDISSYRRKATISEFYSVILPSLQRL---CDYA---SQVDSIEDPHKG---MAISKR 149
           +GR  I  Y  + T+   Y+ +L  L RL   C +    +   S   P        + K+
Sbjct: 684 EGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKK 743

Query: 150 LEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSE---SCPFCRG 200
           L  K +L+ L    ++EC ICL+S T  V+ HC H  C  C        +    CP CR 
Sbjct: 744 LIRKMKLI-LSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRN 803

[Close]

BLAST of CaUC03G053520 vs. ExPASy Swiss-Prot
Match: Q6PCN7 (Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.9e-04
Identity = 35/125 (28.00%), Postives = 53/125 (42.40%), Query Frame = 0


Query: 90  DGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAIS--KRLEHKREL 149
           +G+  I  Y  + T+   Y+ +L  L RL         + +   GM+ S   R +   EL
Sbjct: 678 EGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTN---GMSSSGPSRSDTPEEL 737

Query: 150 LDLDIER---------EDECGICLESHTKIVLPHCCHALCTKC----YHDWKSKSESCPF 200
             + IE+         ++EC ICL+S T  V+ HC H  C  C     H  +     CP 
Sbjct: 738 RKMLIEKMKIILSSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHS-EQPHAKCPL 797

[Close]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL
Match: A0A5A7UPB0 (RING-H2 finger protein ATL47-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001420 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 2.0e-85
Identity = 152/169 (89.94%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSLQRLCDYASQV+SIED HKGM ISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMVISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDV+DT T+MKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLTCGNDVIDTCTVMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL
Match: A0A5D3BIW1 (RING-H2 finger protein ATL47-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004340 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 2.0e-85
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSLQRLCDYASQV+SIED HKGMAISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMAISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDV+DT T++KEDMLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLTCGNDVIDTCTVIKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL
Match: A0A1S4E0L5 (RING-H2 finger protein ATL47-like OS=Cucumis melo OX=3656 GN=LOC103484120 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 2.0e-85
Identity = 152/169 (89.94%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSLQRLCDYASQV+SIED HKGMAISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMAISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDV+DT T++KEDMLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLTCGNDVIDTCTVIKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL
Match: A0A0A0LU99 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050110 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.9e-84
Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +VDF GRPDISSY RKATISEFYSVILPSL+RLCDYASQ++SIED HKGMAISKRLEHKR
Sbjct: 85  KVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKR 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           E LDL+IEREDECGIC ES TKIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 EFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVLTC NDVVD  TIMKEDMLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 205 DLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL
Match: A0A6J1C699 (uncharacterized protein LOC111008662 OS=Momordica charantia OX=3673 GN=LOC111008662 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 3.3e-80
Identity = 145/169 (85.80%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 86  EVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKR 145
           +V  DGRPDISS  +KATISEFYSVILPSLQRLCDYASQVD IED   GMAISKRLEHK+
Sbjct: 85  KVHSDGRPDISSCGKKATISEFYSVILPSLQRLCDYASQVDRIEDLRTGMAISKRLEHKK 144

Query: 146 ELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASG 205
           +LL++D EREDECGIC+E  TKIVLPHCCHA+CT CYHDWKSKSESCPFCRGSLKRVASG
Sbjct: 145 KLLEVDTEREDECGICMEPRTKIVLPHCCHAMCTSCYHDWKSKSESCPFCRGSLKRVASG 204

Query: 206 DLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           DLWVL CSNDVVDT T MKEDMLRFYLFIN+LPEDTPDVLFLMYYEHLL
Sbjct: 205 DLWVLMCSNDVVDTRTXMKEDMLRFYLFINSLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of CaUC03G053520 vs. TAIR 10
Match: AT1G24440.1 (RING/U-box superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-52
Identity = 101/175 (57.71%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 84  VAEVDFDGRPDISSYRRKATISEFYSVILPSLQRL-CDYASQVDSIEDPHKGMAISKR-- 143
           + +V  DGR + S Y RKATI EFY VILPSL+RL  ++A   D         AI+K+  
Sbjct: 77  IYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYPNPKAITKKQY 136

Query: 144 -LEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSL 203
            +E  R +  +D+EREDECGICLE  TK+VLP+CCHA+C KCY +W +KSESCPFCRGS+
Sbjct: 137 DIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSI 196

Query: 204 KRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 255
           KRV S DLWVLTC  DVVD  T+ KED+LRFYL IN+LP+D P+  FL+Y E+L+
Sbjct: 197 KRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVYNEYLI 251

[Close]

BLAST of CaUC03G053520 vs. TAIR 10
Match: AT1G13195.1 (RING/U-box superfamily protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-49
Identity = 96/176 (54.55%), Postives = 125/176 (71.02%), Query Frame = 0


Query: 84  VAEVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEH 143
           V +V  DG+P ++++ RKATISEFY VILPSLQ L    S +D +E    G  + KRL  
Sbjct: 85  VYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLL---HSNLDELETTDIGFDL-KRLSK 144

Query: 144 K-------RELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCR 203
           K           +  +ERE+ECGICLE+ TK+VLP+CCH++C KCY +W  KS+SCPFCR
Sbjct: 145 KITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCR 204

Query: 204 GSLKRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEH 253
           GS+KRV S DLWVL   NDVVDT T  +ED+ RFYL+IN+LP+D P+ LF++YYE+
Sbjct: 205 GSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 256

[Close]

BLAST of CaUC03G053520 vs. TAIR 10
Match: AT1G13195.2 (RING/U-box superfamily protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-49
Identity = 96/176 (54.55%), Postives = 125/176 (71.02%), Query Frame = 0


Query: 84  VAEVDFDGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEH 143
           V +V  DG+P ++++ RKATISEFY VILPSLQ L    S +D +E    G  + KRL  
Sbjct: 47  VYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLL---HSNLDELETTDIGFDL-KRLSK 106

Query: 144 K-------RELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCR 203
           K           +  +ERE+ECGICLE+ TK+VLP+CCH++C KCY +W  KS+SCPFCR
Sbjct: 107 KITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCR 166

Query: 204 GSLKRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEH 253
           GS+KRV S DLWVL   NDVVDT T  +ED+ RFYL+IN+LP+D P+ LF++YYE+
Sbjct: 167 GSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 218

[Close]

BLAST of CaUC03G053520 vs. TAIR 10
Match: AT5G58787.1 (RING/U-box superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-38
Identity = 71/157 (45.22%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 90  DGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLD 149
           DG+  +S Y RKA+I EF +VILPSL +L    + +D  +   +   +  R + + E+ +
Sbjct: 77  DGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQ-KEVCKMRYRKKDESEMSE 136

Query: 150 LDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWV 209
           ++IERE+ECGIC+E ++K+VLP+C H+LC KCY DW+ +S+SCPFCR SLKRV SGDLW+
Sbjct: 137 IEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWM 196

Query: 210 LTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLF 247
               ND V+   I +E+  R +++I  LP   PD ++
Sbjct: 197 FLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 232

[Close]

BLAST of CaUC03G053520 vs. TAIR 10
Match: AT3G47160.1 (RING/U-box superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-37
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 0


Query: 90  DGRPDISSYRRKATISEFYSVILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRE--- 149
           DG+  +S Y RK +I +FY+VI PSL +L      +  ++D  +      R  +K E   
Sbjct: 77  DGKTTMSVYERKTSIKDFYAVIFPSLLQL---ERGITDLDDRKQKEVCKIRYRNKDETEK 136

Query: 150 --LLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVAS 209
             L ++DIERE+ECGIC+E +  +VLP+C H+LC KCY DW  +SESCPFCR SLKRV S
Sbjct: 137 VKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNS 196

Query: 210 GDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLF 247
           GDLW+L   +D V+ +TI +E+  R +++I  LP   PD +F
Sbjct: 197 GDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPDQVF 235

The following BLAST results are available for this feature:

BLAST of CaUC03G053520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737753.1	5.5e-114	74.39	E3 ubiquitin-protein ligase AIRP2 isoform X1 [Cucumis sativus]	[more]
KAA0055299.1	4.1e-85	89.94	RING-H2 finger protein ATL47-like [Cucumis melo var. makuwa]	[more]
XP_016901782.1	4.1e-85	89.94	PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo] >TYJ99223.1 RING-H2 ...	[more]
XP_011651953.1	1.0e-83	88.76	E3 ubiquitin-protein ligase AIRP2 isoform X2 [Cucumis sativus] >KGN64372.1 hypot...	[more]
XP_022137104.1	6.8e-80	85.80	uncharacterized protein LOC111008662 [Momordica charantia]	[more]

BLAST of CaUC03G053520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M022	4.1e-35	43.03	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]
Q95216	2.9e-04	25.60	Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1...	[more]
Q14527	3.7e-04	28.69	Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2	[more]
Q6PCN7	4.9e-04	28.00	Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1	[more]

BLAST of CaUC03G053520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPB0	2.0e-85	89.94	RING-H2 finger protein ATL47-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BIW1	2.0e-85	89.94	RING-H2 finger protein ATL47-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E0L5	2.0e-85	89.94	RING-H2 finger protein ATL47-like OS=Cucumis melo OX=3656 GN=LOC103484120 PE=4 S...	[more]
A0A0A0LU99	4.9e-84	88.76	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050110 P...	[more]
A0A6J1C699	3.3e-80	85.80	uncharacterized protein LOC111008662 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of CaUC03G053520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24440.1	3.8e-52	57.71	RING/U-box superfamily protein	[more]
AT1G13195.1	1.0e-49	54.55	RING/U-box superfamily protein	[more]
AT1G13195.2	1.0e-49	54.55	RING/U-box superfamily protein	[more]
AT5G58787.1	5.3e-38	45.22	RING/U-box superfamily protein	[more]
AT3G47160.1	3.4e-37	45.68	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 158..195 e-value: 0.001 score: 28.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 158..196 score: 11.840146
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 130..205 e-value: 2.4E-12 score: 48.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 155..201 e-value: 1.2E-8 score: 34.6
None	No IPR available	PANTHER	PTHR15315:SF84	OS01G0905700 PROTEIN	coord: 54..254
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 54..254
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 147..201
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 173..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G053520.1	CaUC03G053520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity