CaUC03G053030 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G053030
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr03: 3628080 .. 3628322 (-)
RNA-Seq Expression	CaUC03G053030
Synteny	CaUC03G053030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACGCTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCGTCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGACTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACGCTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCGTCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACGCTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCGTCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGACTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRGNENEKAKNRRPSDSGEYNHHGCPRRDVDCWSTTKQTGD

Homology

[Close]

BLAST of CaUC03G053030 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_022834 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRRPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK RRP+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of CaUC03G053030 vs. ExPASy TrEMBL
Match: A0A0A0LV16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRRPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK RRP+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of CaUC03G053030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	3.3e-20	74.07	hypothetical protein Csa_022834 [Cucumis sativus]	[more]

BLAST of CaUC03G053030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G053030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16	1.6e-20	74.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of CaUC03G053030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G053030.1	CaUC03G053030.1	mRNA