CaUC03G053020 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G053020
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 3613673 .. 3618007 (-)
RNA-Seq ExpressionCaUC03G053020
SyntenyCaUC03G053020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGGTCAACTTCTATGAGGAAGGATTCAAGCCAACAAATTTCTGTTACTAAAGCTCTATATTCTGACTCTATAATCGTACGAGCCACAACATGTTGTTTCTAGAGATCCATGACACTAATGTATTGTCCAAAAAGATACAATAGGCAGCGATGGATTTTTTATCATCAGGGCAACAAACCCGATCTGCATCACAATAACCAACTAAATTGAGGGATGAAGATGGTTGTTGACCAAGTAGAACATAATGGATATGGAGCCTTTTAGATAGCGAAGAACACCAAGTTGCTGCTTGCCAATGAGATATTGTTGGGCGTTGAAGAAACTGACTTAGATTGTTGATGATAAATGAGATCTTAGGCGGTGTGTGTAAGATATTGGAATGCACCAATCAAATTAAACTTCTATCCTTGGTGGGATTAGGAAGAGGATCTCCATCATAAACTAATAGTTAACAAATTTTCAGCAACAGCAGGTGTGGGAGCAAAGTTTGAGTCCATACACATGATGATTTAACAGACAAAAGAAAAGCTAGGACACTATACTCATCAATAAATCACTCAGGTTCGGGGCTGATGCCAAAAACTTCGGGTAAAGCACAACTACACACGTTAAGTTATATACTATAGTAAAAGGTCAAGAGAGCGAGTATTGTCTTCTAGAGATCAAATACTCGGATTTAGCTTATCTATTTTAAAATTGTGTTGATTGTATTTAAGGATTGAAATTTCGAACAATATGTGATTGGAAAATAACGAAAGACAAGTGAAAAGTAAAACAAAGGTTGAAATCCAAGAGAAAAAAAAATGTTCAAGGTGTTGATTTCCTTATTTAATTCATTAAGTCGTGTAAATATTCCATGGAACTTTGTGTTAATGATATATTTAAGTCTAGAAACTATTTTCTTGATTATTATCTTTCAACAACAATATTTTCTCATGAAATCCTAATTGATTACTAATTTTTTGAAACCAAATTAAGAAGCATGGAATTAAACATAGTCATGTTCAACTTTCATTATCAATCTATATTTTTATGAAGATTAGATAATGTTCCAATATTATAGGTTAATTAATTAAACATACAGTCTTTATAATTGAACATTTAATTTAACATGCATCAATGATCAATCAAATGTAGAGAAGCACACTAATATTGGAAAACAATCAAATCCACAATCATCCAATATAAAAACAATAAGAATCAACTTAACCCATAAACCAGTTCATCAACATCCTAAAACTAAAATGTTTAGCTACTCACCGTTGCTACAAACATACTCTCATAATGTAACAACTATAAAGAGTAAAGAAATAAATGAAATAGAGAAACACTACCGTCATTGTGAATCCGTCGATGAAGAATGTCGGAAACTCCTTCATTTGATCTTTAGAATCAACGAAAAGTGTCAAAAGAAATCCCCACTTTCTCACACTTTCTGTAGCTTAAGACCCTTAAAGGCTCTGTAATTTCGTGTGGAGGTCAACTGAAAACCCTAGGTCTTATAGAGAAAAATTGCCAAAAAAAAGAAAAAAAAACTTTCCAAATTTGTAGCATTGGCGCCGCAGTGCTACACGACACTGCAAGTTGTGGTTCTATGGCCAACAATTTGCACATCATCTTATACGGCATCGTGACACTCTTCCCTTTTTTTTTTGCTATTTTGGCCTTTATTTTATATGTATTTTCGAGTTTTGGCCCTTTCTTTGACTTCATTGATCATAATTTGTGTGTTTTAACTCTTTTTAATTTTGAATCTCGTTCTTGTGCTCAAACTCTGAAAAATACTAACAAATGACATCAAATCTAATAATACCAAGTAAAAATCATTCTACATGCAAGGCTAAAAAACACACTTTTCAAGCACGTTTGAGGGTCATGTTGACTTTTTCATCTAGATGGCCATTTAGAAAGCATTATTGATGTCCATTGGACGAATGCACCAATTGTAAGAGATAGCCACCGTGATGATAACTCAAATCATGCATGATTTGATGACTTTACTAAGAGTTCCGACAAAATCTATTCTTGGTGTATGATGAAAGCTTTTGGCAACTATTTGTGCCTTGTGTCCTTCAATACTACCATCAAAACTGTGTTTCAGACGAAATATCCACGTGTTGCCAACCTCATCATAAGGAACCAAATTCCTACGGTTTTGATTTTTGATTTATTTAATCCGAATTAGGTGAAAACTAGTAACTCAATAGTTAATAATTATCTTATATGTATAAATATTAATAATTCAGTTTCAACAATTACAATGTATGTACAACAGATCAGATCGAGGGCCAATCAAAAATTAGAAAAAGTGAGATCACATGCTCCACAATATATTTGTAAAATTCTTATTAAATTTCAGTTTTGCCACTTTTTCAATTGAAACATAAAATATTGCTATAAACTTCAATTCTTCAAGAAAAATATCATCATCTCTTCACGGTGGAGAAAAAAATGAAGAAAAAAATGGAAACAATAGACGAGGGAAAACTTGGAAATTAAAAATTAAAAAAAAATTGACCGATCAATATTTTTCCTATTTAAAAATATTTTAAAGAGATGCTATATGTTTTTAATTTTTTTCTCTGATCTGGCTATCTACTGTATCTTTATTTTATTTCTTTTAAAATCCACTCAAAGTCATGTAAAAAAAAAGATTTAGAAAACCACAGCTATTTATTTGATTTCATCTATTTCTATCAGATTTACATCAACGATTGCATATAAAAAAGTGATAGGCCACGTTTACGACTCTGTAATCAAAATTGGTAGATTCGTGATGAAATTCCATTGATATATTAATTGTAATATATGCTATAACAAACATAATTAGATTGTTTTTTTACAATATTTACTTAGAATTATAAATCTGTCACATTTAGTATTACTGTTACTATTACTGTTACTGTGATAAATCCTTAATTCTCATATCGTAATAGTAAAAATATTTATAACAATAATAGTAATAGTATGTAAAGGTATAGTGGATCTCCCATAATTTTCAAAGACAATTAGATTAAGCATCTTCCTTCCTCAATCAAATTATCCATTTTTATTATAGATTTGGAAACGAACTCTAACGGCCTGTTTAAATTAACTAGAGAAAAAAATATTTTTCAAAAAAATCATTTTTATTTAAACTCTTTTGATAAAAATTGTTTAAAATGAATTTTGAATGTGTTTCAAAAGCAATTTTAAGTGGTTGTCAAACACATAAATTGTTTTCAAAATTACTTATTTTCAAAATTAAACACTTGAGAAGTTAATCCAAACATGCCATAAGTTTATTACGATTATGAAACAGAGGTAACCAACAACAAACATAATCAAATGGGGCCCACTTTTCATATTACCGTTGATGAGTTACGTTTCGCTTGTGATAATTAAATGTGGCCATGTGTGAAAGTTATGATCCAACATTTAAGGTTTGAATATTGATACAATTATTAGTTTAACAATTTAATTAATACAAGCTCTAAACTTTTGAGAGAAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTTTAAAGAAACTGAAAGAAAAAAGATTTTTTTTTTTCTGAAATAAAGCCCAATTGTGAATATATCGAACCTATTTTGTGCACAAATAAAGATGAAGAGGGCAATGTAAAATTTTCCCCAAGGGTAATTTCACATGAAACTAAATTATTAACACAGTTTCTCCATATACATAAAGCAAGTTCTTCTATTTATACACAAAGTTTTCTCAGCTCAATCATTCAAATATATTTTAAAAAGCAATGTCTTAGAATTGTGGCCGACCCACTTAAACTTTGCCTTTGTTTGGTGGAGATGAAAAATCCCACTAAAATAACCATATAAAAGAACACTTCCTCCTTCATATAATAGAGCCACAAAACCACCAAAAACAAATATTTTCTCTCAAAAGAAGTCGTCAAAATAGTAAATTATTCATTCTTTTTCCTTTCAAACGCCCTTTTCATTACATTTCATGCAGAATCCATACAAATTCTAAAACATCGAATCACAAATTTTCTTTGCTTCTTTTTGCAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCCGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAG

mRNA sequence

ATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCCGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAG

Coding sequence (CDS)

ATGTTGTCGATCTATCCGCACCAGACTATGGATATGCGAGAAGGACACGAAGCTGAGAAGATGAGACGACGATGTGTAGCGGTCGCCGTAGTCGTGCTGTTGGCATTGATTATGAACACTTTCTTCCCTGTTGATGGAAGACATTTTAAGTTGCAAGATGAAAGGCAAGAGAAGAATCCAACTGGTGAGAATCAAATGTTAAGAGGTAGAAAAGAATATGAAACTAGTGATTATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAAGGAGACAAAGGAATAG

Protein sequence

MLSIYPHQTMDMREGHEAEKMRRRCVAVAVVVLLALIMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHHGCYRSDYNCWSNKETKE
Homology
[Close]
BLAST of CaUC03G053020 vs. NCBI nr
Match: KAA0051747.1 (hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK11551.1 hypothetical protein E5676_scaffold952G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-24
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 23 RRCVAVAVVVLLAL-IMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHH 82
          R+ VAVAVV++LAL IMNTFF VDGRH +LQDE  EKNP  E+Q LRGRK+YETS+YNHH
Sbjct: 2  RQHVAVAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPI-ESQKLRGRKQYETSEYNHH 61

Query: 83 GCYRSDYNCWSNKETKE 99
          GCYRSDYNCWSNKETKE
Sbjct: 62 GCYRSDYNCWSNKETKE 77

[Close]
BLAST of CaUC03G053020 vs. NCBI nr
Match: KAG6607148.1 (hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 6  PHQTMDMREGHEAEKMRRRCVAVAVVVLLALIMNTFFPVDGRHFKLQDERQEKNPTGENQ 65
          P QT  ++    AEKM+ R VAV VV+L  +I+NT F  DGRH KLQ +R       ENQ
Sbjct: 10 PTQTFTLK----AEKMKMRRVAVGVVMLF-MIINTLFVADGRHLKLQQQRD------ENQ 69

Query: 66 MLRGRKEYETSDYNHHGCYRSDYNCWSN-KETKE 99
           L  +K YET++YNHHGCYRSDYNCWSN KET+E
Sbjct: 70 NLEPKKHYETNEYNHHGCYRSDYNCWSNRKETRE 92

[Close]
BLAST of CaUC03G053020 vs. ExPASy TrEMBL
Match: A0A5D3CI92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold952G00100 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0 

Query: 23 RRCVAVAVVVLLAL-IMNTFFPVDGRHFKLQDERQEKNPTGENQMLRGRKEYETSDYNHH 82
          R+ VAVAVV++LAL IMNTFF VDGRH +LQDE  EKNP  E+Q LRGRK+YETS+YNHH
Sbjct: 2  RQHVAVAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPI-ESQKLRGRKQYETSEYNHH 61

Query: 83 GCYRSDYNCWSNKETKE 99
          GCYRSDYNCWSNKETKE
Sbjct: 62 GCYRSDYNCWSNKETKE 77

The following BLAST results are available for this feature:
BLAST of CaUC03G053020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051747.14.6e-2479.22hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK1155... [more]
KAG6607148.11.2e-1657.45hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CaUC03G053020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G053020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI922.2e-2479.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CaUC03G053020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G053020.1CaUC03G053020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane