CaUC03G052410 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G052410
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionvon Willebrand factor, type A
LocationCiama_Chr03: 2808327 .. 2808698 (+)
RNA-Seq ExpressionCaUC03G052410
SyntenyCaUC03G052410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGCCAGATTCCTTCCGCTAGCTTCGTTCCACGACGATGGCTCGCTTATGAGCAAATCAGTGTCATCAACTTTCTTACCCACAAAATATTGAACATACTTTTGAAGTTTGAAGATGAGATGGACCAAAATGAATATTTACGGTCTTGCTTATCCCCAGAAAAAAATCAAATGAGAGCAGCAACAATTCTTGGTCACCTAAAGTCCAAAGCCTACTCTGACTCGGAGTCTATAGAAAAGCACATCCGCGGTCTGACAGAACGTTTCTGGCGAGGGAAGGAGAAAGGACTATCTGATCTTTGCCTACTTGCTTTGTCATGTCTAACATCATTCATTCCAAGAAGCAGAGAAGCTGATACAAGGATATAG

mRNA sequence

ATGACTGGCCAGATTCCTTCCGCTAGCTTCGTTCCACGACGATGGCTCGCTTATGAGCAAATCAGTGTCATCAACTTTCTTACCCACAAAATATTGAACATACTTTTGAAGTTTGAAGATGAGATGGACCAAAATGAATATTTACGGTCTTGCTTATCCCCAGAAAAAAATCAAATGAGAGCAGCAACAATTCTTGGTCACCTAAAGTCCAAAGCCTACTCTGACTCGGAGTCTATAGAAAAGCACATCCGCGGTCTGACAGAACGTTTCTGGCGAGGGAAGGAGAAAGGACTATCTGATCTTTGCCTACTTGCTTTGTCATGTCTAACATCATTCATTCCAAGAAGCAGAGAAGCTGATACAAGGATATAG

Coding sequence (CDS)

ATGACTGGCCAGATTCCTTCCGCTAGCTTCGTTCCACGACGATGGCTCGCTTATGAGCAAATCAGTGTCATCAACTTTCTTACCCACAAAATATTGAACATACTTTTGAAGTTTGAAGATGAGATGGACCAAAATGAATATTTACGGTCTTGCTTATCCCCAGAAAAAAATCAAATGAGAGCAGCAACAATTCTTGGTCACCTAAAGTCCAAAGCCTACTCTGACTCGGAGTCTATAGAAAAGCACATCCGCGGTCTGACAGAACGTTTCTGGCGAGGGAAGGAGAAAGGACTATCTGATCTTTGCCTACTTGCTTTGTCATGTCTAACATCATTCATTCCAAGAAGCAGAGAAGCTGATACAAGGATATAG

Protein sequence

MTGQIPSASFVPRRWLAYEQISVINFLTHKILNILLKFEDEMDQNEYLRSCLSPEKNQMRAATILGHLKSKAYSDSESIEKHIRGLTERFWRGKEKGLSDLCLLALSCLTSFIPRSREADTRI
Homology
[Close]
BLAST of CaUC03G052410 vs. NCBI nr
Match: OMO71229.1 (von Willebrand factor, type A [Corchorus capsularis])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 25  NFLTHKIL-----NILLKFEDEMDQNEYLRSCLSPEKNQMRAATILGHLKSKAYSDSESI 84
           +F+ H I+     ++  K + ++  ++ L S       ++R A  +   K   YS+SESI
Sbjct: 393 SFIQHPIVQPECQSVFFKRDQQISPSDALFS------QKVRKAWTVTLGKQLNYSESESI 452

Query: 85  EKHIRGLTERFWRGKEKGLSDLCLLALSCLTSFIPRSREA 120
           E++  GLTERF RG +KGLSDLCLL  S L SFIP  REA
Sbjct: 453 ERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFIPSRREA 486

[Close]
BLAST of CaUC03G052410 vs. NCBI nr
Match: OMP09731.1 (von Willebrand factor, type A [Corchorus olitorius])

HSP 1 Score: 60.8 bits (146), Expect = 9.2e-06
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0 

Query: 25  NFLTHKIL-----NILLKFEDEMDQNEYLRSCLSPEKNQMRAATILGHLKSKAYSDS-ES 84
           +F+ H I+     ++  K + ++  ++ L S       ++R A  +   K   YS+S ES
Sbjct: 435 SFIQHPIVQPECQSVFFKHDQQISPSDALFS------QKVRKAWTVTLGKQFNYSESEES 494

Query: 85  IEKHIRGLTERFWRGKEKGLSDLCLLALSCLTSFIPRSREA 120
           IE++  GLTERF RG +KGLSDLCLL  S L SF+P  REA
Sbjct: 495 IERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFMPSRREA 529

[Close]
BLAST of CaUC03G052410 vs. ExPASy TrEMBL
Match: A0A1R3HLK1 (von Willebrand factor, type A OS=Corchorus capsularis OX=210143 GN=CCACVL1_18347 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 0 

Query: 25  NFLTHKIL-----NILLKFEDEMDQNEYLRSCLSPEKNQMRAATILGHLKSKAYSDSESI 84
           +F+ H I+     ++  K + ++  ++ L S       ++R A  +   K   YS+SESI
Sbjct: 393 SFIQHPIVQPECQSVFFKRDQQISPSDALFS------QKVRKAWTVTLGKQLNYSESESI 452

Query: 85  EKHIRGLTERFWRGKEKGLSDLCLLALSCLTSFIPRSREA 120
           E++  GLTERF RG +KGLSDLCLL  S L SFIP  REA
Sbjct: 453 ERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFIPSRREA 486

[Close]
BLAST of CaUC03G052410 vs. ExPASy TrEMBL
Match: A0A1R3KRM7 (von Willebrand factor, type A OS=Corchorus olitorius OX=93759 GN=COLO4_05187 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0 

Query: 25  NFLTHKIL-----NILLKFEDEMDQNEYLRSCLSPEKNQMRAATILGHLKSKAYSDS-ES 84
           +F+ H I+     ++  K + ++  ++ L S       ++R A  +   K   YS+S ES
Sbjct: 435 SFIQHPIVQPECQSVFFKHDQQISPSDALFS------QKVRKAWTVTLGKQFNYSESEES 494

Query: 85  IEKHIRGLTERFWRGKEKGLSDLCLLALSCLTSFIPRSREA 120
           IE++  GLTERF RG +KGLSDLCLL  S L SF+P  REA
Sbjct: 495 IERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFMPSRREA 529

The following BLAST results are available for this feature:
BLAST of CaUC03G052410 vs. NCBI nr
Match NameE-valueIdentityDescription
OMO71229.12.2e-0742.00von Willebrand factor, type A [Corchorus capsularis][more]
OMP09731.19.2e-0640.59von Willebrand factor, type A [Corchorus olitorius][more]
BLAST of CaUC03G052410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G052410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3HLK11.1e-0742.00von Willebrand factor, type A OS=Corchorus capsularis OX=210143 GN=CCACVL1_18347... [more]
A0A1R3KRM74.5e-0640.59von Willebrand factor, type A OS=Corchorus olitorius OX=93759 GN=COLO4_05187 PE=... [more]
BLAST of CaUC03G052410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G052410.1CaUC03G052410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process