CaUC03G052400 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G052400
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGeneral transcription factor IIH subunit
LocationCiama_Chr03: 2804898 .. 2806747 (+)
RNA-Seq ExpressionCaUC03G052400
SyntenyCaUC03G052400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTGTATGTCAGGGACTTCTTTGATCAATATCCACTTAGTCAATTTGGTTGGTGACTATAAAAAATGGAGTGGCTCATTGCTTAACAGATCTTGGCGGAAGTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGGTATGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTCTATTCTTGTATCCTGCTCCTAATTCCTGTGATCTTGGGGACATCGTGGACTTTGCCACAATGAGAGAAATTAAAATGGCTATTTATTCTATTTTTTCAGTTGACCAGCTAATAGAACTGACCACAAAGGAAGCTTAATAGAGAATACAGTCATGAGACAGAAGTTCAAAGTAAAATTACCATAGCAAGATTCTATTTGACGTTTGTATATATGGAAGTTCTGTTTCCTAAATCTTTGTGAAATGCTTTCCTTTTGTGTACAGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCAATGCCTAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGTTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTGTGAGCTGCTAACGAAGTATCAATTTGTGGATTCACACTTATCTCCTCACCCCATTTGGCTAGGTCGTATCATCATCTCTGTCCAATTATACTACTTGATGAAGTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAGATCTCTTTATGGTAATTATTGTCTTCTAATAGTATAATATGCACATCGAGTTAGACAGCATTTTGTGTCAGGGGATGTCTTAAAATCAGGTAAAGTGAAAATTAAGAAGATACTCATTTTTTCTTTCCTACAAGGAGCTTTTTTAATGTTTGGTCATTCTTCAATACTAATTATGTGCTGCATTAGTACTGCAATATGACGACTTTGCAAACTGATTTTGCTCTTTCTGTGTTGAGTGACTTCTTTTTGTTACATTGTTCATATGTGATTATGTTTAAGATAATAGAAGCAACTTATATTTGTGGCATGCAAGTATGAACAAATGTGGATGAGATTTTGCCCCTTTGTAATTTGCTGAATCGAACTTTTGACCACCCTTCAATCATTGCATACTCATTCAAAAGTACTTTTCATTTTAGGCACAGGTAACAACCGAGGCATCTGTATTTCTTGCACAAAGGGCAAACAACACTTCCTATCTTGATTTTGATATTTAGATTCACAAGAGCTTGCACAATTGTCCTGGCTGCGAGAGTTTCAGGCGTCCCAAATTGGCTACTTCTGATGAATGATCGTCTACTTTTGGATGCAACTGCATGGCCTAACCAAATTCAAACTCAATATTCAATATGGCCATGAGGATACTTTGTACACGTGTTTACAAAGTTTCAAGCATGTTTTCCAATGATGTTGAATCTAAGGCTCACATTGTTACTACCAAAGTCGTCTGTCTTTCATGTTTTGGCCGCTTCTAAACCGATTCCATACAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

mRNA sequence

ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCAATGCCTAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGTTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAGATCTCTTTATGGCTCACATTGTTACTACCAAAGTCGTCTGTCTTTCATGTTTTGGCCGCTTCTAAACCGATTCCATACAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

Coding sequence (CDS)

ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCAATGCCTAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGTTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAGATCTCTTTATGGCTCACATTGTTACTACCAAAGTCGTCTGTCTTTCATGTTTTGGCCGCTTCTAAACCGATTCCATACAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

Protein sequence

MDFRPSRMAVVQTFRSLKALVGKLEYLGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTCPRYKAQVFYDKVVHDPHDPRHQLPKVCFGCQERLMDPGKNSNKHDIWKLSNEISLWLTLLLPKSSVFHVLAASKPIPYRSKAAGASTLDAIVGIGKRIRCENKIFQDGRLKPTFLLGCTRS
Homology
[Close]
BLAST of CaUC03G052400 vs. NCBI nr
Match: KAA0055121.1 (general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738.1 general transcription factor IIH subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-21
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-21
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. NCBI nr
Match: XP_004143721.1 (general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_000481 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-20
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. NCBI nr
Match: XP_038874496.1 (general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-20
Identity = 63/137 (45.99%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQV-----------------------------------FYDKVVHDPHDPRHQLPK 133
           PR KA+V                                     DKV+   HDPR+QLPK
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVL---HDPRNQLPK 365

[Close]
BLAST of CaUC03G052400 vs. NCBI nr
Match: KAG7036868.1 (General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-20
Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAKVGGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]
BLAST of CaUC03G052400 vs. ExPASy Swiss-Prot
Match: Q9ZVN9 (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 48/135 (35.56%), Postives = 68/135 (50.37%), Query Frame = 0 

Query: 27  LGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGG 86
           L   ++  V L+ + +   P  PA+AE A+ NLIK+G  +RAAE S+AI SCH+E K+G 
Sbjct: 239 LYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGA 298

Query: 87  GYTCPRYKAQVF-------------------------------YDKV--VHDPHDPRHQL 129
           GY CPR KA+V                                +D+V  +   +D R +L
Sbjct: 299 GYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKL 358

[Close]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match: A0A5A7UNG8 (General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001400 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match: A0A1S3CUH8 (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match: A0A0A0KPM4 (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.9e-21
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAKVGGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match: A0A6J1K980 (General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC111493405 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-20
Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAKVGGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match: A0A6J1GC53 (General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111452792 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-20
Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAKVGGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]
BLAST of CaUC03G052400 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-15
Identity = 48/135 (35.56%), Postives = 68/135 (50.37%), Query Frame = 0 

Query: 27  LGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKVGG 86
           L   ++  V L+ + +   P  PA+AE A+ NLIK+G  +RAAE S+AI SCH+E K+G 
Sbjct: 239 LYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGA 298

Query: 87  GYTCPRYKAQVF-------------------------------YDKV--VHDPHDPRHQL 129
           GY CPR KA+V                                +D+V  +   +D R +L
Sbjct: 299 GYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKL 358

The following BLAST results are available for this feature:
BLAST of CaUC03G052400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0055121.12.1e-2147.01general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738.... [more]
XP_008467294.12.1e-2147.01PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo][more]
XP_004143721.11.0e-2046.27general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 gen... [more]
XP_038874496.11.0e-2045.99general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida][more]
KAG7036868.18.6e-2044.78General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CaUC03G052400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVN91.3e-1335.56General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT... [more]
BLAST of CaUC03G052400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UNG81.0e-2147.01General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CUH81.0e-2147.01General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674... [more]
A0A0A0KPM44.9e-2146.27General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169... [more]
A0A6J1K9804.2e-2044.78General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1GC534.2e-2044.78General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of CaUC03G052400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05055.18.9e-1535.56general transcription factor II H2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G052400.1CaUC03G052400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005634 nucleus