CaUC03G052090 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G052090
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 2403138 .. 2403356 (+)
RNA-Seq ExpressionCaUC03G052090
SyntenyCaUC03G052090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCGAACAAGGAACAGAGGAAGCGGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGA

mRNA sequence

ATGAATTCGAACAAGGAACAGAGGAAGCGGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCGAACAAGGAACAGAGGAAGCGGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAACTCGGAAGCTCAGTCCGAGTCATGA

Protein sequence

MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPGTSGYNSEAQSES
Homology
BLAST of CaUC03G052090 vs. NCBI nr
Match: TYK08469.1 (hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNSNKE RKR+ + PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDETLTSTSTTPAPG
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETLTSTSTTPAPG 60

Query: 61 TSGYNSEAQSES 73
          TSGYNSEAQSES
Sbjct: 61 TSGYNSEAQSES 72

BLAST of CaUC03G052090 vs. NCBI nr
Match: KAE8652730.1 (hypothetical protein Csa_013247 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 7.8e-21
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1  MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDE----------TL 60
          MNS K+ RKR ++ PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDE          T 
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQSES 73
          TSTSTTPAPGTSGYNSEAQ ES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 82

BLAST of CaUC03G052090 vs. NCBI nr
Match: KAG6607199.1 (hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 4   NKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPGTSG 63
           +K  ++R S+LPPRRG I I IF+SIFRT K +PEGF   RR++E+LT +  TPA  +SG
Sbjct: 50  SKAPKRRFSELPPRRGQILIGIFKSIFRTGKPMPEGFESDRRKNESLTLSPITPATNSSG 109

Query: 64  YNSEAQSES 73
           YNSE QSES
Sbjct: 110 YNSEVQSES 118

BLAST of CaUC03G052090 vs. NCBI nr
Match: KAG6583473.1 (hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNS  +Q+KRL++LPPRRG + I IFRSIF+TVK       R RR           PAPG
Sbjct: 1  MNSVTDQKKRLTELPPRRGKVMINIFRSIFKTVK-------RSRR-----------PAPG 50

Query: 61 TSGYNSEA 69
          +SGYNSEA
Sbjct: 61 SSGYNSEA 50

BLAST of CaUC03G052090 vs. ExPASy TrEMBL
Match: A0A5D3CDP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74032G00010 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNSNKE RKR+ + PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDETLTSTSTTPAPG
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETLTSTSTTPAPG 60

Query: 61 TSGYNSEAQSES 73
          TSGYNSEAQSES
Sbjct: 61 TSGYNSEAQSES 72

BLAST of CaUC03G052090 vs. ExPASy TrEMBL
Match: A0A0A0LV79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MNSNKEQRKRLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDE----TLTSTSTT 60
          MNS K+ RKR ++ PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDE    T TSTSTT
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60

Query: 61 PAPGTSGYNSEAQSES 73
          PAPGTSGYNSEAQ ES
Sbjct: 61 PAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK08469.13.6e-2691.67hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa][more]
KAE8652730.17.8e-2175.61hypothetical protein Csa_013247 [Cucumis sativus][more]
KAG6607199.15.6e-1159.42hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583473.14.1e-0654.41hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CDP61.7e-2691.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LV797.6e-2281.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G052090.1CaUC03G052090.1mRNA