CaUC03G052070 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G052070
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr03: 2375770 .. 2376018 (+)
RNA-Seq ExpressionCaUC03G052070
SyntenyCaUC03G052070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCGGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTTTCATGGAGGCTCCCTCGTCACGTGA

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCGGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTTTCATGGAGGCTCCCTCGTCACGTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCGGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTTTCATGGAGGCTCCCTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTDAVSPPSPPPPPPLIFHGGSLVT
Homology
BLAST of CaUC03G052070 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0

Query: 4  ASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTDAVS 63
          ASST  KGKIS+LPPKRGRIKAQIFESLVNSAALAAFMA+E+LCRLIRDLVTGART  V 
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPSPP-PPPPLIFHGGS 80
          PP+P  PPPPLIFHG S
Sbjct: 61 PPTPARPPPPLIFHGSS 77

BLAST of CaUC03G052070 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       +L ++IR LV+GA+  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 AVSPPSP--PPPPPLIFHGGSLVT 83
          AV PPSP  PPPPPL + GGS+VT
Sbjct: 61 AVLPPSPMAPPPPPLRYDGGSVVT 77

BLAST of CaUC03G052070 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-15
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       +L ++IR LV+GAR  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 AVSPPSP--PPPPPLIFHGGSLVT 83
          AV  PSP  P PPPL + GGS+VT
Sbjct: 61 AVPLPSPVAPLPPPLRYDGGSVVT 77

BLAST of CaUC03G052070 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 3.6e-14
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAA S GLK  ISSLPP+RGRIKA+IFESLVNSAAL       +L ++IR LV+ A+  
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 AVSPPSP--PPPPPLIFHGGSLVT 83
          AV  PSP  PPPPPL + GGS+VT
Sbjct: 61 AVPLPSPVAPPPPPLRYDGGSVVT 77

BLAST of CaUC03G052070 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLIFHGGS 80
             PP P PPPPLIFHG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653222.12.2e-2484.42hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583308.11.7e-1666.67hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583309.15.5e-1565.48hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.13.6e-1463.10hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS064.6e-2378.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G052070.1CaUC03G052070.1mRNA