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CaUC03G051690 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGATTCGCAAATCCTCCAGACGTAGAGCACGTAGAGCCTTGAATCCAAATACATTACCCACAATGGAAGTAAACATGTTAGTAACAGAACCTTCTTCAAAAAGGTCTAGGGGATAAGCTACATAAGCAATATATTGATTTTCTTCTCCAGGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCTTTGGTTTCATATTCAGGAGTATAATAAGTCAATTTATAATCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCATGAATTAAGAATTCTCGCAACAACAAGGTCTACTCGACATGAATTAGGAGTTAATGAAACCTTTTATAGGAATCCTTTCACAAAATTCTCAACTAATATTATCAACTAATCAGAATGGTTCGTTATTAGACCATGGTATTTGATTCACCAAATACAGCATTATTGTATACTCTTTCATATGTATGGCGCAACCCAATCCTTTTTTTTCAAGTTTGTAATCTAATCTTTTGCCTCAAAATATTGAAATAAAAAAAAATTCACTCTTGACAGTGATATATGTTGTATATGTAAATCCTAGATGTGAAAATATGCGGAATTCCTATGAAAAAAAAAAANNNNNNNNNNGGAAGAACTCCGTTCACTACCTAAAAATAAATCAAAAATATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTTCAATTTTAGATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGGTCAGCTACCCAACTAATCTTCATAATTAAATACCGTTACTGTATAGGTAGATCTCGTTGTGAAAGACCGATTACTAGCTAATTCATGGGTAGAGCCAAAGAGGGTGAACTGTACAAGTTAACAATAACATTGATGAAATAAAAGAAGGAGCTCCGGTGTATAGAGAGGACCTCACCGTTTAAGAAGTAACCATAGAAACGAAGGAACCCACTATTTCTTGATCCATTTCTATTTTGATTTATTTACTCTATGTTTGTTTTGATACCTAGTATGAATACAATTTCGTATTTTGGGGTGACTAGAACAAAAAAAGAAATCGTGGTCGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTTTTATTTTATACATTGGAAAAATACGTTTTGTTATTAATAGACTAGGCAAGGAGAAAGGAATAACTGAAAGAAAGGAAATCAATTAGTTATTCATCAAAGTTTCATTTATTCAATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA GGATTCGCAAATCCTCCAGACGTAGAGCACGTAGAGCCTTGAATCCAAATACATTACCCACAATGGAAGTAAACATGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA ATGGAAGTAAACATGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA MEVNMNRLDSIASSFVTIKTGKPIGPHSCPCTSRRFSSYSGPCFLRWNSRLRSYSECCQDINEKEFPIGNKCLAIKQRKSYLTEGLWPYSSKNGLRGIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK Homology
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009326012.1 (ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 [Citrullus mucosospermus] >YP_009431580.1 ribosomal protein L20 [Citrullus amarus] >APW82484.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >QZL38704.1 ribosomal protein L20 [Citrullus ecirrhosus] >APD52503.1 ribosomal protein L20 [Citrullus lanatus] >APW82569.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >APW82654.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 216.1 bits (549), Expect = 2.9e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_004841806.1 (ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal protein L20 [Cucumis melo subsp. agrestis] >ASY96631.1 ribosomal protein L20 [Cucumis melo var. conomon] >ASY96719.1 ribosomal protein L20 [Cucumis melo var. makuwa] >ASY96806.1 ribosomal protein L20 [Cucumis melo var. momordica] >ASY96893.1 ribosomal protein L20 [Cucumis melo var. dudaim] >ASY96980.1 ribosomal protein L20 [Cucumis melo var. cantalupo] >ASY97154.1 ribosomal protein L20 [Cucumis melo var. inodorus] >ASY97328.1 ribosomal protein L20 [Cucumis melo var. flexuosus] >QJF46406.1 ribosomal protein L20 [Cucumis melo]) HSP 1 Score: 215.7 bits (548), Expect = 3.8e-52 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009317409.1 (ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [Citrullus colocynthis] >YP_009431665.1 ribosomal protein L20 [Citrullus rehmii] >YP_009456169.1 ribosomal protein L20 [Lagenaria siceraria] >YP_009752350.1 ribosomal protein L20 [Bryonia marmorata] >YP_010131117.1 ribosomal protein L20 [Benincasa hispida] >QHB75986.1 ribosomal protein L20 [Cucumis melo subsp. melo] >QNM38554.1 ribosomal protein L20 [Lagenaria siceraria var. microcarpa] >QZL38616.1 ribosomal protein L20 [Citrullus naudinianus] >AHM88712.1 ribosomal protein L20 [Lagenaria siceraria] >AHM88771.1 ribosomal protein L20 [Lagenaria siceraria]) HSP 1 Score: 215.7 bits (548), Expect = 3.8e-52 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. NCBI nr
Match: AHM89948.1 (ribosomal protein L20 [Lagenaria siceraria] >AHM90184.1 ribosomal protein L20 [Lagenaria siceraria]) HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009004067.1 (ribosomal protein L20 [Cucumis hystrix] >YP_009346507.1 ribosomal protein L20 [Cucumis x hytivus] >YP_247622.1 ribosomal protein L20 [Cucumis sativus] >Q4VZJ4.1 RecName: Full=50S ribosomal protein L20, chloroplastic [Cucumis sativus] >ALF03324.1 ribosomal protein L20 [Cucumis sativus var. hardwickii] >AVE15354.1 ribosomal protein L20 [Cucumis sativus var. sativus] >AAZ94674.1 ribosomal protein L20 [Cucumis sativus] >ABI97440.1 ribosomal protein L20 [Cucumis sativus] >ABI98768.1 ribosomal protein L20 [Cucumis sativus]) HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.9e-54 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.7e-48 Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 5.0e-47 Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.5e-46 Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: B1NWH3 (50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 PE=3 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.5e-46 Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A1P8LE11 (50S ribosomal protein L20 OS=Citrullus mucosospermus OX=519315 GN=rpl20 PE=3 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A1P8LF87 (50S ribosomal protein L20 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpl20 PE=3 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A343A8D3 (50S ribosomal protein L20, chloroplastic OS=Citrullus lanatus OX=3654 GN=rpl20 PE=3 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A249RX54 (50S ribosomal protein L20, chloroplastic OS=Citrullus amarus OX=1567104 GN=rpl20 PE=3 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A249RZK5 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl20 PE=3 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CaUC03G051690 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 ) HSP 1 Score: 175.6 bits (444), Expect = 4.1e-44 Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 0
BLAST of CaUC03G051690 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 ) HSP 1 Score: 58.5 bits (140), Expect = 7.3e-09 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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