CaUC03G051690 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G051690
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L20, chloroplastic
LocationCiama_Chr03: 1932483 .. 1934315 (+)
RNA-Seq ExpressionCaUC03G051690
SyntenyCaUC03G051690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTCGCAAATCCTCCAGACGTAGAGCACGTAGAGCCTTGAATCCAAATACATTACCCACAATGGAAGTAAACATGTTAGTAACAGAACCTTCTTCAAAAAGGTCTAGGGGATAAGCTACATAAGCAATATATTGATTTTCTTCTCCAGGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCTTTGGTTTCATATTCAGGAGTATAATAAGTCAATTTATAATCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCATGAATTAAGAATTCTCGCAACAACAAGGTCTACTCGACATGAATTAGGAGTTAATGAAACCTTTTATAGGAATCCTTTCACAAAATTCTCAACTAATATTATCAACTAATCAGAATGGTTCGTTATTAGACCATGGTATTTGATTCACCAAATACAGCATTATTGTATACTCTTTCATATGTATGGCGCAACCCAATCCTTTTTTTTCAAGTTTGTAATCTAATCTTTTGCCTCAAAATATTGAAATAAAAAAAAATTCACTCTTGACAGTGATATATGTTGTATATGTAAATCCTAGATGTGAAAATATGCGGAATTCCTATGAAAAAAAAAAANNNNNNNNNNGGAAGAACTCCGTTCACTACCTAAAAATAAATCAAAAATATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTTCAATTTTAGATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGGTCAGCTACCCAACTAATCTTCATAATTAAATACCGTTACTGTATAGGTAGATCTCGTTGTGAAAGACCGATTACTAGCTAATTCATGGGTAGAGCCAAAGAGGGTGAACTGTACAAGTTAACAATAACATTGATGAAATAAAAGAAGGAGCTCCGGTGTATAGAGAGGACCTCACCGTTTAAGAAGTAACCATAGAAACGAAGGAACCCACTATTTCTTGATCCATTTCTATTTTGATTTATTTACTCTATGTTTGTTTTGATACCTAGTATGAATACAATTTCGTATTTTGGGGTGACTAGAACAAAAAAAGAAATCGTGGTCGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTTTTATTTTATACATTGGAAAAATACGTTTTGTTATTAATAGACTAGGCAAGGAGAAAGGAATAACTGAAAGAAAGGAAATCAATTAGTTATTCATCAAAGTTTCATTTATTCAATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA

mRNA sequence

GGATTCGCAAATCCTCCAGACGTAGAGCACGTAGAGCCTTGAATCCAAATACATTACCCACAATGGAAGTAAACATGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA

Coding sequence (CDS)

ATGGAAGTAAACATGAACAGGCTCGATTCCATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACAGCGGCCCCTGCTTCCTCAGGTGGAACTCCCGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAATGAGAAAGAATTCCCCATTGGTAACAAATGCTTAGCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTTGTACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAA

Protein sequence

MEVNMNRLDSIASSFVTIKTGKPIGPHSCPCTSRRFSSYSGPCFLRWNSRLRSYSECCQDINEKEFPIGNKCLAIKQRKSYLTEGLWPYSSKNGLRGIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Homology
[Close]
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009326012.1 (ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 [Citrullus mucosospermus] >YP_009431580.1 ribosomal protein L20 [Citrullus amarus] >APW82484.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >QZL38704.1 ribosomal protein L20 [Citrullus ecirrhosus] >APD52503.1 ribosomal protein L20 [Citrullus lanatus] >APW82569.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >APW82654.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_004841806.1 (ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal protein L20 [Cucumis melo subsp. agrestis] >ASY96631.1 ribosomal protein L20 [Cucumis melo var. conomon] >ASY96719.1 ribosomal protein L20 [Cucumis melo var. makuwa] >ASY96806.1 ribosomal protein L20 [Cucumis melo var. momordica] >ASY96893.1 ribosomal protein L20 [Cucumis melo var. dudaim] >ASY96980.1 ribosomal protein L20 [Cucumis melo var. cantalupo] >ASY97154.1 ribosomal protein L20 [Cucumis melo var. inodorus] >ASY97328.1 ribosomal protein L20 [Cucumis melo var. flexuosus] >QJF46406.1 ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-52
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009317409.1 (ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [Citrullus colocynthis] >YP_009431665.1 ribosomal protein L20 [Citrullus rehmii] >YP_009456169.1 ribosomal protein L20 [Lagenaria siceraria] >YP_009752350.1 ribosomal protein L20 [Bryonia marmorata] >YP_010131117.1 ribosomal protein L20 [Benincasa hispida] >QHB75986.1 ribosomal protein L20 [Cucumis melo subsp. melo] >QNM38554.1 ribosomal protein L20 [Lagenaria siceraria var. microcarpa] >QZL38616.1 ribosomal protein L20 [Citrullus naudinianus] >AHM88712.1 ribosomal protein L20 [Lagenaria siceraria] >AHM88771.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-52
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. NCBI nr
Match: AHM89948.1 (ribosomal protein L20 [Lagenaria siceraria] >AHM90184.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQK RALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKXRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. NCBI nr
Match: YP_009004067.1 (ribosomal protein L20 [Cucumis hystrix] >YP_009346507.1 ribosomal protein L20 [Cucumis x hytivus] >YP_247622.1 ribosomal protein L20 [Cucumis sativus] >Q4VZJ4.1 RecName: Full=50S ribosomal protein L20, chloroplastic [Cucumis sativus] >ALF03324.1 ribosomal protein L20 [Cucumis sativus var. hardwickii] >AVE15354.1 ribosomal protein L20 [Cucumis sativus var. sativus] >AAZ94674.1 ribosomal protein L20 [Cucumis sativus] >ABI97440.1 ribosomal protein L20 [Cucumis sativus] >ABI98768.1 ribosomal protein L20 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSN VDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.9e-54
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSN VDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-48
Identity = 100/114 (87.72%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           I+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWI 
Sbjct: 4   IRRGYIARRRRTKIRLFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRLWIT 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIR NKV YSYSR +H+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 64  RINAVIRENKVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-47
Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSF+GA SRLTRTITQQKIRAL SA++DRGRQKR+FR+LWI 
Sbjct: 4   IKRGYIARRRRTKIRLFASSFQGARSRLTRTITQQKIRALVSAHQDRGRQKRDFRRLWIT 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIR+NKV YSYS  +H+LYKRQLLLNRKILAQIAILNRNCLYMISNEI+K
Sbjct: 64  RINAVIRANKVYYSYSTLIHHLYKRQLLLNRKILAQIAILNRNCLYMISNEILK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-46
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI 
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRLWIT 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIR   V YSYSR +H+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 64  RINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match: B1NWH3 (50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-46
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           I+RGYIARRRRTKIRLFASSFRGAHSRLTRTI QQKIRAL SA+RDR RQKRNFR+LW+ 
Sbjct: 4   IRRGYIARRRRTKIRLFASSFRGAHSRLTRTIIQQKIRALVSAHRDRDRQKRNFRRLWVT 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIR + V YSYSR ++NLYKRQLLLNRKILAQIAILNRNCLYMISN+I+K
Sbjct: 64  RINAVIRESTVSYSYSRLINNLYKRQLLLNRKILAQIAILNRNCLYMISNDILK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A1P8LE11 (50S ribosomal protein L20 OS=Citrullus mucosospermus OX=519315 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A1P8LF87 (50S ribosomal protein L20 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A343A8D3 (50S ribosomal protein L20, chloroplastic OS=Citrullus lanatus OX=3654 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A249RX54 (50S ribosomal protein L20, chloroplastic OS=Citrullus amarus OX=1567104 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match: A0A249RZK5 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA
Sbjct: 4   IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVIRSNKVDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 64  RINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of CaUC03G051690 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-44
Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 0 

Query: 98  IKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIA 157
           IKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI 
Sbjct: 4   IKRGYIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWIT 63

Query: 158 RINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 212
           RINAVI    V YSY+ F+HNLYK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Sbjct: 64  RINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

[Close]
BLAST of CaUC03G051690 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-09
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 108 RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNK 167
           + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 168 VDYSYSRFVHNLYKRQLLLNRKILAQIAI 197
           V  +Y  F+H L K  + LNRK+L+++++
Sbjct: 63  V--NYGNFIHGLMKENIQLNRKVLSELSM 89

The following BLAST results are available for this feature:
BLAST of CaUC03G051690 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009326012.12.9e-52100.00ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 ... [more]
YP_004841806.13.8e-5299.12ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal prote... [more]
YP_009317409.13.8e-5299.12ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [... [more]
AHM89948.11.5e-5198.25ribosomal protein L20 [Lagenaria siceraria] >AHM90184.1 ribosomal protein L20 [L... [more]
YP_009004067.11.5e-5198.25ribosomal protein L20 [Cucumis hystrix] >YP_009346507.1 ribosomal protein L20 [C... [more]
BLAST of CaUC03G051690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZJ41.9e-5498.2550S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=... [more]
Q09G232.7e-4887.7250S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl... [more]
Q09WZ45.0e-4786.8450S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3... [more]
Q7FNS51.5e-4686.8450S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 ... [more]
B1NWH31.5e-4685.0950S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 P... [more]
BLAST of CaUC03G051690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1P8LE111.4e-52100.0050S ribosomal protein L20 OS=Citrullus mucosospermus OX=519315 GN=rpl20 PE=3 SV=... [more]
A0A1P8LF871.4e-52100.0050S ribosomal protein L20 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpl2... [more]
A0A343A8D31.4e-52100.0050S ribosomal protein L20, chloroplastic OS=Citrullus lanatus OX=3654 GN=rpl20 P... [more]
A0A249RX541.4e-52100.0050S ribosomal protein L20, chloroplastic OS=Citrullus amarus OX=1567104 GN=rpl20... [more]
A0A249RZK51.9e-5299.1250S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3... [more]
BLAST of CaUC03G051690 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00660.14.1e-4478.95ribosomal protein L20 [more]
AT1G16740.17.3e-0938.20Ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 136..165
score: 57.37
coord: 106..135
score: 42.32
coord: 171..197
score: 50.28
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 98..206
e-value: 1.3E-25
score: 87.9
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 98..202
e-value: 6.2E-32
score: 109.9
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 98..209
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 148..164
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 96..211
score: 23.797918
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 100..207
e-value: 1.1657E-41
score: 134.919
NoneNo IPR availableGENE3D6.10.160.10coord: 98..149
e-value: 2.2E-11
score: 45.7
NoneNo IPR availablePANTHERPTHR10986:SF1239S RIBOSOMAL PROTEIN L20, MITOCHONDRIALcoord: 98..209
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 150..211
e-value: 2.0E-19
score: 70.9
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 98..209

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G051690.1CaUC03G051690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome