CaUC03G051150 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051150
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Elongin-C
Location	Ciama_Chr03: 1238150 .. 1240774 (-)
RNA-Seq Expression	CaUC03G051150
Synteny	CaUC03G051150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCAAGGAAGGCCAAAAGGAGAATCGAAAGCTTTTTGTTCATAGGGAGAGGGAACAAGAATCTCTCTCAAGTTCGCAAGATAGTTTAGAGCGAAATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTAATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCCAGGTCTCCTTCTCAATCTTTCTTCATCAATCCACTTTTTGAGGCTCACGATCTCATTTTTATTTCTTGTTTATGTATGGAGATGGATGAATTGGGTGAAATCTTGGAACGGTTGTTTTATTTTGGAAAATTTTCATGTTTAGGGCTTTGTTTTACTCTTTTAGTTTTCATGGATAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGGTTTTCATTTCTTCTTTTTCTGTGTCAAATCTGAGATGAATTGCCTGACTTTCTGGTATTTTTGAGTAATTGTGCTTAAACTGGTCCTGTACTGATGGTTACCATTTGAAAATGTGTATTGTTTACACTGAATCACGTGGGAATTAAACTTTTGATGCCTAAGGCTTGTTTGGATTGACTTTCGGAAGGTTTTTTTAAGTGCAAAAACAATATTTTTAAGCAGTTAGAAAATCAATTGAAACATGCGCTTGGTTTCTCAACCTCAGTCACTACTACCTTACAAATTAGTGTCTGAAAAAGATATGAGTTATTGATGTTATTGTAGTTCTTGTTACCATTTATGTCTATGACTTGCTCTTTTTAATTTTATTTTTGGAATGGCTTGTTAACGTAGGACTGCGTCCTCTTCAATTTATTGAAAATAGAAAACTGGAGCACAGGGCATCTAGTTCTGTCATTTGGACTTGTGCAGATTGATCTTTGAAATTTAGTTCGTTTAGGGAAAAAAGAAGAGTCTTCTGAGAAACAAGATAGAATGAATAGAAAGCTTCAGCGCTGTTTGATCCAGATTAACTTGTTTCTATAGTTATATACTTTTTGTTGTTTGTGTAAGCGAGGGGTTGTAGGCATACTTGTAAGTTAGAACTGCATATAGAGTTCTTACAATTGGATTTAGGAGTCAAATGTTATGCTCACAATGTGACAGTACAATGGTACATGAGTGTAATGGAGGAAAGTTAGGCAGCTGATAATGACAAGCCTCTTAGACTACTTCTCACTTCACACCCATTTGAAACACTATTAATTTAATTATAAACACATAAAGAGAATTGTGACGGAGTAAGCTCATCTCAGTGTTGCAACTTGTTACTTGCCAAAGTGTTTTTGTGGCATGTGAGAGAGTGCATGCTTATGAATTTAGGTACATTTTGGACAAAGTTTTGAATGACAAGCCTCCTAGAGTGTAACTCACACACATTTAAAACATTATTCATAAACATGTAAACAGAATTGGGCAATGTAAACTCTTCTCACTATTGCAACTTGCCAGAATGTTTCTATGGCATGTGGGACAGTGCATGCTTATGGACTTGGGTAAATTTTGTACAAAAGTTTGGATGGACGAGTGTGTAAATGTTTTGGTCATTTACTCATTGGTGGACAACAGATGAAATTACACTTTTCATTTAAACTTATGCACTTCTCATTTTCTGGCAAACTTATGGGGAATTAACTGATTAAAGATTATGCTGTTGTTAATACTTATGTGTGTTTCATTCTTTAACTATGTTGTTATGGACATTGATGTCTTCCTTTTTGTCAGCGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGCAACCTCTGTGCACTCTTCCACCCATTTGACATTGTAATCAGGTGGCAATTTTATGTGATAGAAATAGATTTCCTTGACTAATAGATTGTCAGTAAAGTTCATTATAATACTTCCCTTGTCTCTTTTTTTATTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGGGTGGGTGGGGTGGGGGGTAGGAATACATACTTGTGGATGATATTGTTGTTTCATTTCACTCATTGGAGCTCCATGTCAACTACTGAGCACTGGGATTCATTCCATGGCATTACTGTAGGGATAAATGTTGTCTGTATTTTTATGCTTGGACCATCTTAACTTCTCAAGTTCTTAGATGATCATTTAAAGCCACTTAGCTAGCCTCACTAAGATGAGAAATAGGATACACATAGGCCATCTTTGTTTTTATAACCTTTTGTTTTAAGGAGATATTGGTTGATGGATCTTCAGAAATTACATTTTGGTAAAGTCGTTTTGTAGGAGTCGACAAATAAACGTTACGAGTTGACGAATTACTCTTGGGTCCATTTTGTAGATTCTACTTCATGGAAGATAGAATGTTATAATTACCTAGAATGAGTTAGAATCTCCTATTGCATCCATTGTACAATTTTATCATATTGGAAGCTCCATTGTATTTCAAAATTAGAACTACTTTTCTCTTCCCCTGTTCATGGCAAATGTAAACTCTTATCTTCATTCCCAAGGCCATTGACTATTGAACA

mRNA sequence

TGTCAAGGAAGGCCAAAAGGAGAATCGAAAGCTTTTTGTTCATAGGGAGAGGGAACAAGAATCTCTCTCAAGTTCGCAAGATAGTTTAGAGCGAAATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTAATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGCAACCTCTGTGCACTCTTCCACCCATTTGACATTGTAATCAGTCGTTTTGTAGGAGTCGACAAATAAACGTTACGAGTTGACGAATTACTCTTGGGTCCATTTTGTAGATTCTACTTCATGGAAGATAGAATGTTATAATTACCTAGAATGAGTTAGAATCTCCTATTGCATCCATTGTACAATTTTATCATATTGGAAGCTCCATTGTATTTCAAAATTAGAACTACTTTTCTCTTCCCCTGTTCATGGCAAATGTAAACTCTTATCTTCATTCCCAAGGCCATTGACTATTGAACA

Coding sequence (CDS)

ATGAAGAAGGAAGAGACTGTAAAATTGATCAGCGCTGAGGGTTTTGAGTTCGTAATCCACAAAGATGCTGCCATGGTTTCTCAGACGATTCGAAATATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCACAGAGAAGTGACTTTTCCTGAGATTAGCACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGCGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Homology

[Close]

BLAST of CaUC03G051150 vs. NCBI nr
Match: XP_038895699.1 (elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. NCBI nr
Match: XP_022964706.1 (elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023521052.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6583404.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019170.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. NCBI nr
Match: XP_022158132.1 (elongin-C [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. NCBI nr
Match: XP_008457436.1 (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_008457437.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 5.0e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. NCBI nr
Match: XP_022948640.1 (elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita moschata] >XP_022948642.1 elongin-C-like [Cucurbita moschata] >XP_022998913.1 elongin-C-like [Cucurbita maxima] >XP_022998914.1 elongin-C-like [Cucurbita maxima] >XP_023523194.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523196.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523399.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023523400.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6607274.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036952.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot
Match: Q2KII4 (Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot
Match: Q15369 (Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot
Match: P83940 (Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot
Match: P83941 (Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFY 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot
Match: Q9USX9 (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=elc1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.1e-16
Identity = 41/95 (43.16%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 3  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 62
          ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAIL-NEGIFSEAQKNECTFPDIRATLLEKVC 61

Query: 63 QYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL 97
          +Y ++N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62 EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL
Match: A0A6J1HJP6 (Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.4e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL
Match: A0A6J1DWE1 (Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL
Match: A0A1S3C6T3 (Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL
Match: A0A0A0LY44 (Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL
Match: A0A6J1KFM7 (Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFYW+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CaUC03G051150 vs. TAIR 10
Match: AT5G59140.1 (BTB/POZ domain-containing protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-39
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 5  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 64
          ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FYWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          FYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

The following BLAST results are available for this feature:

BLAST of CaUC03G051150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895699.1	5.9e-48	100.00	elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida]	[more]
XP_022964706.1	1.3e-47	98.98	elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pe...	[more]
XP_022158132.1	2.3e-47	98.98	elongin-C [Momordica charantia]	[more]
XP_008457436.1	5.0e-47	97.96	PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_00...	[more]
XP_022948640.1	2.5e-46	96.94	elongin-C-like [Cucurbita moschata] >XP_022948641.1 elongin-C-like [Cucurbita mo...	[more]

BLAST of CaUC03G051150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KII4	1.3e-18	47.83	Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1	[more]
Q15369	1.3e-18	47.83	Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1	[more]
P83940	1.3e-18	47.83	Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1	[more]
P83941	1.3e-18	47.83	Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1	[more]
Q9USX9	8.1e-16	43.16	Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=el...	[more]

BLAST of CaUC03G051150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJP6	6.4e-48	98.98	Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1	[more]
A0A6J1DWE1	1.1e-47	98.98	Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1	[more]
A0A1S3C6T3	2.4e-47	97.96	Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1	[more]
A0A0A0LY44	2.4e-47	97.96	Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1	[more]
A0A6J1KFM7	1.2e-46	96.94	Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1	[more]

BLAST of CaUC03G051150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59140.1	2.4e-39	81.91	BTB/POZ domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..98 e-value: 1.8E-7 score: 40.8
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 5..98 e-value: 7.2E-28 score: 99.0
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 3..97
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..67 e-value: 1.3E-8 score: 34.9
None	No IPR available	PANTHER	PTHR20648:SF0	ELONGIN-C	coord: 2..98
None	No IPR available	CDD	cd18321	BTB_POZ_EloC	coord: 6..98 e-value: 3.81308E-47 score: 143.883
IPR039948	Elongin-C	PANTHER	PTHR20648	ELONGIN-C	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051150.1	CaUC03G051150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0070449	elongin complex
molecular_function	GO:0003746	translation elongation factor activity