CaUC03G050670 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G050670
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Embryo defective
Location	Ciama_Chr03: 779740 .. 781677 (+)
RNA-Seq Expression	CaUC03G050670
Synteny	CaUC03G050670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGTTCATTTTGCTGCGAAGTTTGATATTAATTAACTTAAAAACCAAAATAATGACAGGAGCAAATCTCTTGCAGGAATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTACATTCGGTATGATGTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTAAATTCTTATTCTTCTGTAGGTTTTGCTATTGTTTTGTTTTCTTTTGCAATTATTTAGGTATTGATTGATAAGTTCCAATCTCTGATTGAGAGGAAAAGTTAGTGGCAACAGGATTGACTTACATACGCCGAATGTATGCTCATCATTTAGTTGTTCATTGAAAATTTGATTCTGCTAAGCTCTTGTTCTGTGTGTTTTTTCTGTTCTTCTACTGGTTCATAAGTATGCTCGTATTCGAATGGTGATTTTAGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGCGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAACAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGGTAATCGACCTTTGAGTTATTGTTTGATTCAGATGCTTTATATTGAAATGAAATATTTTCTTAGACTTATGATCATGTTGTGAGGCCCCTCGATTATGCATTCATATAAACGTAGGGGTAGGAAGGGAATTTTGTGAACAAGCTTGGCTTGTGGGAGAGGATTTTCAACCCTCTAAAATGTGCTGGTAGCGAGGGTTCTCTTTATCTTCCTTGTTGTTTGTTTGGCTGTAATTTCCTAGAAGTTCATAAATAATACAACTAGAGCATGTGATAATCTTTCACAAATTGTGAAAGAGAATTTTCATTGAGAATAAAGTTGATATTACAGAGTAATTTATAGAGAGATTTTACAACAGAAAGGGTAACCAACTAAAACAGAAAATAACAAAAAGGTTTAACAAATATAAACTGATTTGTCAACTACTATTAACAGAGCATTGCTCTGTTTCTGGGGATTGGTTTGTTGGGAAAGCTTAATTGCAGGAGGGTCGGGTTCCTAACTATCAAAAAAAATGATCTGGGTAAAATCCTTGTATGCTACCTTCTAGATGGAGGTGCTAATTGATTTTTAGTTGAACAGTATCTGTCCTATAGCTTGTACAACTATGTCCTTGAGTTCTAAGTGGTTGGTGTATTTTGTTTACTGACTTCTGGTTCCTGGTCAACCAAACCTGTTGATGCATGAGATAAAATTGCTTCAAGTTCAAGTGTAGATATTGAAATATTCTTAAATATTTAATGCTTGTGACAGAAATAGCGATAGGTGGTTTTGTAACCTTGTCATGCATGTCTTGCTATCAATGGAAATAGCTGAAGATATGAACAGAATGGTCGAGAGTATACTCAATGTTCTAGGGGAAGGTTCTAGTCCTTGTTTTGCGATTATTCTTTCCTCCATCTGTTTGAAGTTTGAAATGGAATTGTGTTTGCAGAGAGGATTTCTTACACTAGATTATGATATTTAGAAGTTTATCTCTGTATCCTCATTTAATTAGATTTAAAACTCATCCCATCCCATGGTTGTTGATGTTGATTAGATATTTAACAATCAATCCTTAGTATTGAATTAGCGGCCTAGTAACATCAATCTATGGTGCTGTGTGGTAATGGTATTCCTATGACTAGATTCTGCTCTTCCTATTATGCCTGTGGTAATGGTATCCCTTACTCTTGTGCAATACCTCTGTGCCGTGAGCCTGACTTTCATTGTTTGATGCAAATTTTCAATCGATATTAAGAAATGTTATCTTTGATAATTTAGAAATCTTGCCATAATGTGCTATCAAATGGGGCAAAGAAGTTGTAG

mRNA sequence

AATAAGTTCATTTTGCTGCGAAGTTTGATATTAATTAACTTAAAAACCAAAATAATGACAGGAGCAAATCTCTTGCAGGAATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTACATTCGGTATGATGTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGCGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAACAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGATTCTGCTCTTCCTATTATGCCTGTGGTAATGGTATCCCTTACTCTTGTGCAATACCTCTGTGCCAAATCTTGCCATAATGTGCTATCAAATGGGGCAAAGAAGTTGTAG

Coding sequence (CDS)

ATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTACATTCGGTATGATGTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGCGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAACAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGATTCTGCTCTTCCTATTATGCCTGTGGTAATGGTATCCCTTACTCTTGTGCAATACCTCTGTGCCAAATCTTGCCATAATGTGCTATCAAATGGGGCAAAGAAGTTGTAG

Protein sequence

MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDLDSALPIMPVVMVSLTLVQYLCAKSCHNVLSNGAKKL

Homology

[Close]

BLAST of CaUC03G050670 vs. NCBI nr
Match: XP_038905860.1 (uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905861.1 uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905862.1 uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905864.1 uncharacterized protein LOC120091803 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-45
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK RIVLRKVYDYIRYD+KEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKVRIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGPDLRPNDYKV+ESENKTNS KSAPKEK PSTLEDL
Sbjct: 61  RDIGPDLRPNDYKVQESENKTNSGKSAPKEKVPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. NCBI nr
Match: XP_023522298.1 (uncharacterized protein LOC111786187 [Cucurbita pepo subsp. pepo] >XP_023528947.1 uncharacterized protein LOC111791710 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 8.5e-45
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKARIVLRK+YDY+RYD+KEIAFPSSLPDPPH KKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKARIVLRKIYDYVRYDLKEIAFPSSLPDPPHSKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGP+LRPNDYKVEESENK NS KSAPKEKEPSTLEDL
Sbjct: 61  RDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. NCBI nr
Match: XP_022144745.1 (uncharacterized protein LOC111014361 [Momordica charantia] >XP_022144746.1 uncharacterized protein LOC111014361 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 8.5e-45
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK RIVLRK+YDYIRYD+KEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKTRIVLRKLYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGPDLRPNDYKVEESENKTN+ KSA KEKEPSTLEDL
Sbjct: 61  RDIGPDLRPNDYKVEESENKTNAAKSASKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. NCBI nr
Match: XP_022934670.1 (uncharacterized protein LOC111441792 [Cucurbita moschata] >KAG6580719.1 hypothetical protein SDJN03_20721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 5.5e-44
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKARIVLRK+YDY+RYD+KEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWV
Sbjct: 1   MKARIVLRKIYDYVRYDLKEIAFPSSLPDPPHSKKRRKLTWRERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDLDSA 103
           RDIGP+LRPNDYKVEESENK NS KSAPKEKEPSTLEDL  A
Sbjct: 61  RDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDLAMA 102

[Close]

BLAST of CaUC03G050670 vs. NCBI nr
Match: KAG7017475.1 (hypothetical protein SDJN02_19340 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKARIVLRK+YDY+RYD+KEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWV
Sbjct: 1   MKARIVLRKIYDYVRYDLKEIAFPSSLPDPPHSKKRRKLTWRERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDLDSA 103
           RDIGP+LRPNDYK+EESENK NS KSAPKEKEPSTLEDL  A
Sbjct: 61  RDIGPELRPNDYKMEESENKKNSAKSAPKEKEPSTLEDLAMA 102

[Close]

BLAST of CaUC03G050670 vs. ExPASy TrEMBL
Match: A0A6J1CSI2 (uncharacterized protein LOC111014361 OS=Momordica charantia OX=3673 GN=LOC111014361 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.1e-45
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK RIVLRK+YDYIRYD+KEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKTRIVLRKLYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGPDLRPNDYKVEESENKTN+ KSA KEKEPSTLEDL
Sbjct: 61  RDIGPDLRPNDYKVEESENKTNAAKSASKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. ExPASy TrEMBL
Match: A0A6J1F8D8 (uncharacterized protein LOC111441792 OS=Cucurbita moschata OX=3662 GN=LOC111441792 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.7e-44
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKARIVLRK+YDY+RYD+KEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWV
Sbjct: 1   MKARIVLRKIYDYVRYDLKEIAFPSSLPDPPHSKKRRKLTWRERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDLDSA 103
           RDIGP+LRPNDYKVEESENK NS KSAPKEKEPSTLEDL  A
Sbjct: 61  RDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDLAMA 102

[Close]

BLAST of CaUC03G050670 vs. ExPASy TrEMBL
Match: A0A5D3DNS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004180 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 88/99 (88.89%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKA+IV RK+YDY+RYD+KEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWV
Sbjct: 1   MKAKIVFRKIYDYVRYDLKEIAFPSSLPDPPHVKKRPKLTWHDRFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL
Sbjct: 61  RDIGPELRPHEYKVEESENKTNSPKSAPKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. ExPASy TrEMBL
Match: A0A6J1J6G3 (uncharacterized protein LOC111481775 OS=Cucurbita maxima OX=3661 GN=LOC111481775 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKARIVLRK+YDY+RYD+KEIAFPSSLPDPPH KKRRKLTW ERFLVLKEASRLYAASWV
Sbjct: 1   MKARIVLRKIYDYVRYDLKEIAFPSSLPDPPHSKKRRKLTWLERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGP+LRPNDYKVEESENK NS +SAPKEKEPSTLEDL
Sbjct: 61  RDIGPELRPNDYKVEESENKKNSAESAPKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. ExPASy TrEMBL
Match: A0A1S3B6Q8 (uncharacterized protein LOC103486641 OS=Cucumis melo OX=3656 GN=LOC103486641 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 88/99 (88.89%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKA+IV RK+YDY+RYD+KEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWV
Sbjct: 1   MKAKIVFRKIYDYVRYDLKEIAFPSSLPDPPHVKKRPKLTWHDRFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL
Sbjct: 61  RDIGPELRPHEYKVEESENKTNSPKSAPKEKEPSTLEDL 99

[Close]

BLAST of CaUC03G050670 vs. TAIR 10
Match: AT5G06240.1 (embryo defective 2735 )

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-34
Identity = 72/99 (72.73%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MKARIVLRKVYDYIRYDVKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK ++V RKV DYI YD+KEI  PSSLPDPPHV KRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKLKVVYRKVSDYICYDLKEIVLPSSLPDPPHVVKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSTKSAPKEKEPSTLEDL 100
           RDIGP+LRPNDYK +         K A  E EPS LEDL
Sbjct: 61  RDIGPELRPNDYKKQGDAEPKKQAKEA--ENEPSVLEDL 97

The following BLAST results are available for this feature:

BLAST of CaUC03G050670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905860.1	5.0e-45	94.95	uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905861.1 unchara...	[more]
XP_023522298.1	8.5e-45	92.93	uncharacterized protein LOC111786187 [Cucurbita pepo subsp. pepo] >XP_023528947....	[more]
XP_022144745.1	8.5e-45	93.94	uncharacterized protein LOC111014361 [Momordica charantia] >XP_022144746.1 uncha...	[more]
XP_022934670.1	5.5e-44	90.20	uncharacterized protein LOC111441792 [Cucurbita moschata] >KAG6580719.1 hypothet...	[more]
KAG7017475.1	1.2e-43	89.22	hypothetical protein SDJN02_19340 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CaUC03G050670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G050670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSI2	4.1e-45	93.94	uncharacterized protein LOC111014361 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1F8D8	2.7e-44	90.20	uncharacterized protein LOC111441792 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A5D3DNS5	2.2e-43	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1J6G3	2.2e-43	90.91	uncharacterized protein LOC111481775 OS=Cucurbita maxima OX=3661 GN=LOC111481775...	[more]
A0A1S3B6Q8	2.2e-43	88.89	uncharacterized protein LOC103486641 OS=Cucumis melo OX=3656 GN=LOC103486641 PE=...	[more]

BLAST of CaUC03G050670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06240.1	2.5e-34	72.73	embryo defective 2735	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..96
None	No IPR available	PANTHER	PTHR36064	EMBRYO DEFECTIVE 2735	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G050670.1	CaUC03G050670.1	mRNA