Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGTATGTACGATCAAGGAGGAGACGCTGCTCCGTCTTACGGAGCCCCTGGAGGCGGTGGAGGCTACGGTGGTGGAGGTGGAGGCTACGGAGGCGGTGGTGGTGCAGGCTATGGTGGAAAGGGCGGTGACGGTGGATATGGCGGCGGAGGCCGGGGCGGCGGTAGAGGCTACGGAGGACGAGGCGGCGGCGGAGGCGGAGGCGGAGGCTACGGTGGTCGAGGTTTCTCCAGTTTTGTTATTATTATTGCTATTATTTTATCTTAATCGTTCAGTGGCGAGAATCTTTGGGGGGAAGGAAGTCTATTGTTTAGAAAAAATTTAGGATTTTTATCCTTTATTTTTAATTATTGGGGAGACTTTCTTTCTGATTTGTTGGTTCGACGATGTTATTGCTATGTTTTGTTTTGGAAAGGTTAATTTATTGCTATTGGGTGGGGTGTGTGACTTGTATTTGGTAAGTTAATTTCCCGCTATCGGATCCAACTGCGAAGCTAAAGTGAATTGTTTTTGTTTCCCACTAAAGAGTTACATGTTCTTCATCGCCTCAGTTTCTTTATGTGCCTTTTGTTTTGATCCAAACTAGGCGGTGGAGGCGGATATCAAGGAGGAGATCGAGGGGGGCGAGGTGCTGGACGTGGTGGCGGAGGTGGTCGTGGCGGGAGTGGCAGAGATGGGGATTGGGTCTGCCCTAATCCTGGGTAGGGTTTTCTCTTCTTCGTCTATTACTGAGTTCTTTTGTTTTATTTCATTTGCATGGGTACACTGAACGGCTTCCCATCCCTAAATGCATAAATTGTAGACATTTATATGGGGAACTTGTCTTATGTTTGTTAGCTAAGTTTATGATTGAAACTGATGTTTTGTATTGTTTTGTTTTTGCCATATAGCTGTGGAAATTTGAACTTTGCTAGAAGAGTGGAGTGTAACAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGTGATCGAAGCGGTGGGGGTGGCGGCGGCGGAGGTGGCGGCTATAATAGAGGTGGGTCTGATGGGGGTTATGGCGTCAATCGTAATGGCAGAGGCGGTAGTTTCCATGGTGGTAGAAGTGGAACTCATGATGGAGGTCGAAATGAAGGAGGGAACAGAGGTGGTAATTCTTATGGTGGTCACCAAGGAGGAGAAGATAGTGGGTACAGTCAGGTTCCCCCATCCTCGGCACCCTCATCTGGTGGTCTTGGTGGCTCTTATCCACCATCTTACCATGCTGGAAGTGCAGACTATGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATATCCTCCAACTTATGGTGGTCCTACTGGTGGCTATGGTGGTGATAATCTAGGTGATGGGCGTGGTGCTGCTGGTCGGAGTGGGCCATCAGCTGGATATGATGGTGGCTACAATGCGGGTGGTAGAGGTGGCTATAATGCTGGTGGTAGAGGAGGAGGAAGCTATAATGCCAGTGGTGGTAGAGGTGGTGGTTATGGAAGTACACCAGCAGCAGAGCCTGCACAGGTTAAACAGTGTGATGATAATTGTGATGATTCGTGCGATAATTCTAGAATCTATGTATCTAATTTGCCACCAGATGTGACCATTGATGAATTGAGAGAATTATTTGGCGGAATTGGTCAAGTAAGTAACCTTCTCTTAGGCTATATTCTGTTGCTTGTGGTATTCGATCCTTGTTGGAGTGAGTACCATGTGATCGTGAATTCTTTTTTAGACAGTGTATAAACTTTCAAACTATATTTCCATGTTTAGAAAGTTGACTTTTGATTACTAGGCATTTGTTTGTGATATATGAAGCTCTTATAGAGCTAGTTCTATGCCGCTTGCCAATGAAGTGTCTGCAATTGATATCCTGTCTTCTCTAAAATGTGTCAGTATATGGTATTCCTGATTGTTAGTTCATCCTTTTTAAATAATGAGTATACTTTCATCTGTTTTCTAAATGAACGATCTTTTCATGTTCAGAAGTTATGTTATGAATTCTGTTTGAGACATTTGTTTATGATTTGGAGGTTATGTAGGTAGAGTTCTATTCTTATTGGCAATAAAATAAAGTGGATTTTGTTTCTCTAGTTCTGAAGATTCTTTTTTCAGCATTGACTTCTGCATATAGCATAAAAAATTGAACTGTTTAATTGAAGCCTTTTTTGCATTTTCAATTTGAAGATTGGAAGAATCAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATAAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCTCTGCAGCGCATTCTGCTGGCGGTTTCTATAACAGTAACTACTGTGCTTCTATAGTATTATAATAACAATATTAGATATTATGGTTTTAATTTTAGTTTGAATCTCTCTATGATATCATCTTTCAATGATCATATTTTTGTATCCGCAGATTATGATTTGAGAGGCTATAGCATTAATGTTGCAATGGCTGAGAAGTCTGCACCAAGGGCTCCACCTACATACAACCATGGGTACTTGCTTCACCATTATTCTTTCAAAACAAATTGAGAAATCCGAGTACAAAGTTTAGGCATGCATATATCTTAAAATATGTACTTATTAGTTCTTTCTTGGTGTTTGCTGATAAGGCTGAGAAATTTGCAATTGTAATTACCTCTTTCTTATACACACACAGAGGCAGAAAAAGATTCCTGTTGGCAGAATTAGGACAGGACAAGTTACAGTTTTGTCCAATATTTGATACTGTTTGATATTCCCTGAGTTAATATTATCCAGGAACTATCAACGATATTACTTTGTTTTTATTTTTGACTCTGAGATCCAAACATGTTTGAGAATTAGGCTTTGAATTAAATTTGCCTGTCATACTCATTTTAGTAGAAATGTTATGTATTAGTCTTTTTACTGTTTAGAATGCTATTAGTCTTTTAGTAGGTTACCCACCCATTTCCTTGTTCTTGATTGTGGGGGTGGATATTTTTATCTTCTCCATTTGTGCCAATACTCTTATACTAAGATATTTTAACCGATTCATTTATATTATTATATAATGAAGAATACTTGGGTGTATCATGGACTGTACCCATCTTTTCGCAGCCCACTTCAACCACAATAGAAAAAATTAAAAAATGTTGAGAAAAAGAGGAAAGAAGAGTTGCTAACATGTAGCAAACTGTGATTTGACAATTGGGTTGGATGAGTATAGATGGGTGTAGCTTAGGATGCACCCAGCCTTTTCATTTCATATAAATTATTATGCTTTAGAATTTTTTGTCTTGCACTGCATAAACTGTCCTTTCATGTTGCAGTGGTGGTGGTAGAGGTGGATATGGAGGTGGTGGAGACAGGCGCAGAGATAGCTATAGGGACGGAGGCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCCCGTCCTTACTGAGAGATTCGGCATTGAGCATTTTATGTAATGGGAATTGTGATCTTAGTGTTTTAGTTTTGTTCCATGGCTGGATTCTTGAATTGGAGACCAAAGAGGTAGGTTGTTCACTTTCTATGGGCAAGAGACCTCTTTGCTCCTTTTTATCTATAGTGGTACCTGGAGGATTATAATCTTGCTGGGGCTTGAGATTAATCTAGTTGTGTGAATGTTTTTTTTTATAGAGGCAGGCGGATAATCTCCAAACTGCTTGTTGCTAAGGTAGGTGTTGATGTTTTCAGGTGAGTGCTTCTCTTTCCATAACCATTCTTAGAAATTATGCACTGGGTGCTCTGATGTATAAGCTCCACCTGATCTCAGCTACATCCTTGTTGGATATGATGCAAGCATATCTTAG
mRNA sequence
ATGTCTGGTATGTACGATCAAGGAGGAGACGCTGCTCCGTCTTACGGAGCCCCTGGAGGCGGTGGAGGCTACGGTGGTGGAGGTGGAGGCTACGGAGGCGGTGGTGGTGCAGGCTATGGTGGAAAGGGCGGTGACGGTGGATATGGCGGCGGAGGCCGGGGCGGCGGTAGAGGCTACGGAGGACGAGGCGGCGGCGGAGGCGGAGGCGGAGGCTACGGTGGTCGAGGCGGTGGAGGCGGATATCAAGGAGGAGATCGAGGGGGGCGAGGTGCTGGACGTGGTGGCGGAGGTGGTCGTGGCGGGAGTGGCAGAGATGGGGATTGGGTCTGCCCTAATCCTGGCTGTGGAAATTTGAACTTTGCTAGAAGAGTGGAGTGTAACAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGTGATCGAAGCGGTGGGGGTGGCGGCGGCGGAGGTGGCGGCTATAATAGAGGTGGGTCTGATGGGGGTTATGGCGTCAATCGTAATGGCAGAGGCGGTAGTTTCCATGGTGGTAGAAGTGGAACTCATGATGGAGGTCGAAATGAAGGAGGGAACAGAGGTGGTAATTCTTATGGTGGTCACCAAGGAGGAGAAGATAGTGGGTACAGTCAGGTTCCCCCATCCTCGGCACCCTCATCTGGTGGTCTTGGTGGCTCTTATCCACCATCTTACCATGCTGGAAGTGCAGACTATGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATATCCTCCAACTTATGGTGGTCCTACTGGTGGCTATGGTGGTGATAATCTAGGTGATGGGCGTGGTGCTGCTGGTCGGAGTGGGCCATCAGCTGGATATGATGGTGGCTACAATGCGGGTGGTAGAGGTGGCTATAATGCTGGTGGTAGAGGAGGAGGAAGCTATAATGCCAGTGGTGGTAGAGGTGGTGGTTATGGAAGTACACCAGCAGCAGAGCCTGCACAGGTTAAACAGTGTGATGATAATTGTGATGATTCGTGCGATAATTCTAGAATCTATGTATCTAATTTGCCACCAGATGTGACCATTGATGAATTGAGAGAATTATTTGGCGGAATTGGTCAAATTGGAAGAATCAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATAAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCTCTGCAGCGCATTCTGCTGGCGGTTTCTATAACAATTATGATTTGAGAGGCTATAGCATTAATGTTGCAATGGCTGAGAAGTCTGCACCAAGGGCTCCACCTACATACAACCATGGTTCTTTCTTGGTGTTTGCTGATAAGGCTGAGAAATTTGCAATTGTAATTACCTCTTTCTTATACACACACAGAGGCAGAAAAAGATTCCTGTTGGCAGAATTAGGACAGGACAAGTTACAGTTTTGTCCAATATTTGATACTATCCAAACATTGGTGGTGGTAGAGGTGGATATGGAGGTGGTGGAGACAGGCGCAGAGATAGCTATAGGGACGGAGGCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCCCGTCCTTACTGAGAGATTCGGCATTGAGCATTTTATAGGCAGGCGGATAATCTCCAAACTGCTTGTTGCTAAGGTAGGTGTTGATGTTTTCAGCTACATCCTTGTTGGATATGATGCAAGCATATCTTAG
Coding sequence (CDS)
ATGTCTGGTATGTACGATCAAGGAGGAGACGCTGCTCCGTCTTACGGAGCCCCTGGAGGCGGTGGAGGCTACGGTGGTGGAGGTGGAGGCTACGGAGGCGGTGGTGGTGCAGGCTATGGTGGAAAGGGCGGTGACGGTGGATATGGCGGCGGAGGCCGGGGCGGCGGTAGAGGCTACGGAGGACGAGGCGGCGGCGGAGGCGGAGGCGGAGGCTACGGTGGTCGAGGCGGTGGAGGCGGATATCAAGGAGGAGATCGAGGGGGGCGAGGTGCTGGACGTGGTGGCGGAGGTGGTCGTGGCGGGAGTGGCAGAGATGGGGATTGGGTCTGCCCTAATCCTGGCTGTGGAAATTTGAACTTTGCTAGAAGAGTGGAGTGTAACAAGTGTGGTGCACCCTCACCTGGGGGTGCTAGTGATCGAAGCGGTGGGGGTGGCGGCGGCGGAGGTGGCGGCTATAATAGAGGTGGGTCTGATGGGGGTTATGGCGTCAATCGTAATGGCAGAGGCGGTAGTTTCCATGGTGGTAGAAGTGGAACTCATGATGGAGGTCGAAATGAAGGAGGGAACAGAGGTGGTAATTCTTATGGTGGTCACCAAGGAGGAGAAGATAGTGGGTACAGTCAGGTTCCCCCATCCTCGGCACCCTCATCTGGTGGTCTTGGTGGCTCTTATCCACCATCTTACCATGCTGGAAGTGCAGACTATGGGACTGATGCAGTTCCTCCTCCTGCAAGCTACAGTGGAACTACATATCCTCCAACTTATGGTGGTCCTACTGGTGGCTATGGTGGTGATAATCTAGGTGATGGGCGTGGTGCTGCTGGTCGGAGTGGGCCATCAGCTGGATATGATGGTGGCTACAATGCGGGTGGTAGAGGTGGCTATAATGCTGGTGGTAGAGGAGGAGGAAGCTATAATGCCAGTGGTGGTAGAGGTGGTGGTTATGGAAGTACACCAGCAGCAGAGCCTGCACAGGTTAAACAGTGTGATGATAATTGTGATGATTCGTGCGATAATTCTAGAATCTATGTATCTAATTTGCCACCAGATGTGACCATTGATGAATTGAGAGAATTATTTGGCGGAATTGGTCAAATTGGAAGAATCAAGCAGAAGAGGGGCTACAAGGATCAGTGGCCTTGGAACATAAAAATATATACAGATGAGATGGGAAATAACAAAGGCGATGCATGTGTATCATATGAAGATCCCTCTGCAGCGCATTCTGCTGGCGGTTTCTATAACAATTATGATTTGAGAGGCTATAGCATTAATGTTGCAATGGCTGAGAAGTCTGCACCAAGGGCTCCACCTACATACAACCATGGTTCTTTCTTGGTGTTTGCTGATAAGGCTGAGAAATTTGCAATTGTAATTACCTCTTTCTTATACACACACAGAGGCAGAAAAAGATTCCTGTTGGCAGAATTAGGACAGGACAAGTTACAGTTTTGTCCAATATTTGATACTATCCAAACATTGGTGGTGGTAGAGGTGGATATGGAGGTGGTGGAGACAGGCGCAGAGATAGCTATAGGGACGGAGGCTCTGGACCTGATAGACATCAGCATGGTGGAAATCGATCCCGTCCTTACTGAGAGATTCGGCATTGAGCATTTTATAGGCAGGCGGATAATCTCCAAACTGCTTGTTGCTAAGGTAGGTGTTGATGTTTTCAGCTACATCCTTGTTGGATATGATGCAAGCATATCTTAG
Protein sequence
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGRGYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPSYHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGSFLVFADKAEKFAIVITSFLYTHRGRKRFLLAELGQDKLQFCPIFDTIQTLVVVEVDMEVVETGAEIAIGTEALDLIDISMVEIDPVLTERFGIEHFIGRRIISKLLVAKVGVDVFSYILVGYDASIS
Homology
BLAST of CaUC03G050220 vs. NCBI nr
Match:
KAA0060008.1 (transcription initiation factor TFIID subunit 15b isoform X3 [Cucumis melo var. makuwa] >TYJ97266.1 transcription initiation factor TFIID subunit 15b isoform X3 [Cucumis melo var. makuwa])
HSP 1 Score: 774.2 bits (1998), Expect = 7.6e-220
Identity = 484/587 (82.45%), Postives = 491/587 (83.65%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGR---- 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGGG 60
Query: 61 GGGRGYGGRGGGGGGG-GGYGGRGG------GGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
GGGRGYGGRGGGGGGG GG GG GG GGGYQGGDRGGRGAGRGGGGGRGGSGRDG
Sbjct: 61 GGGRGYGGRGGGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
Query: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRN 180
DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RN
Sbjct: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRN 180
Query: 181 GRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPP 240
GRGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPP
Sbjct: 181 GRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPP 240
Query: 241 SYHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGG 300
SYH GSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGG
Sbjct: 241 SYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGG 300
Query: 301 YNAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
YNAGGRGGYNAGGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSN
Sbjct: 301 YNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
Query: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA
Sbjct: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
Query: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGSF--LVFADKAEKFAIVITSFLY 480
AHSAG +YDLRGYSINVAMAEKSAPRAPPTYNHG + LV +AEK
Sbjct: 421 AHSAG----DYDLRGYSINVAMAEKSAPRAPPTYNHGFYSPLVSYARAEK---------- 480
Query: 481 THRGRKRFLLAELGQDKLQFCPIFDTIQTLVVVEVDMEVVETGAEIAIGTEALDLIDISM 540
GAEIA GTEALDLIDISM
Sbjct: 481 ------------------------------------------GAEIATGTEALDLIDISM 526
Query: 541 VEIDPVLTERFGIEHFIGRRIISKLLVAKVGVDVFSYILVGYDASIS 572
VEID VLTERFGIEHFIGRRIISKLLVAKVGVDVFSY+LVG DASIS
Sbjct: 541 VEIDRVLTERFGIEHFIGRRIISKLLVAKVGVDVFSYVLVGSDASIS 526
BLAST of CaUC03G050220 vs. NCBI nr
Match:
XP_011658817.1 (transcription initiation factor TFIID subunit 15b [Cucumis sativus])
HSP 1 Score: 704.5 bits (1817), Expect = 7.4e-199
Identity = 421/456 (92.32%), Postives = 425/456 (93.20%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGY--GGGGGGYGGGGGAGYGGKGGDGGYGGGGR----- 60
MSGMYDQGGDAAPSYGAPGGGGGY GGGGGGYGGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGGG 60
Query: 61 -GGGRGYGGRGGGG-----GGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGD 120
GGGRGYGGRGGGG GGGGGY G GGGYQGGDRGGRGAGRGGGGGRGGSGRDGD
Sbjct: 61 GGGGRGYGGRGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDGD 120
Query: 121 WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNG 180
WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRS GGGGGGGGYNRGG D GYG +RNG
Sbjct: 121 WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRS--GGGGGGGGYNRGGGDSGYGGSRNG 180
Query: 181 RGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPS 240
RGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPPS
Sbjct: 181 RGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPPS 240
Query: 241 YHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGY 300
YH GS+DYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAA R GPSAGYDGGY
Sbjct: 241 YHGGSSDYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAARGGPSAGYDGGY 300
Query: 301 NAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL 360
NAGGRGGYNAGGR GGSYNASGGR GGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL
Sbjct: 301 NAGGRGGYNAGGR-GGSYNASGGRAGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL 360
Query: 361 PPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA 420
PPDVT DELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA
Sbjct: 361 PPDVTTDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA 420
Query: 421 HSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 444
HSAGGFYNNYDLRGYSINVAMAEKSAPRAPP YNHG
Sbjct: 421 HSAGGFYNNYDLRGYSINVAMAEKSAPRAPPAYNHG 453
BLAST of CaUC03G050220 vs. NCBI nr
Match:
XP_008457317.1 (PREDICTED: transcription initiation factor TFIID subunit 15b isoform X1 [Cucumis melo])
HSP 1 Score: 703.0 bits (1813), Expect = 2.1e-198
Identity = 423/457 (92.56%), Postives = 426/457 (93.22%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGR---- 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGGG 60
Query: 61 GGGRGYGGRGGGGGGG-GGYGGRGG------GGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
GGGRGYGGRGGGGGGG GG GG GG GGGYQGGDRGGRGAGRGGGGGRGGSGRDG
Sbjct: 61 GGGRGYGGRGGGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
Query: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRN 180
DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RN
Sbjct: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRN 180
Query: 181 GRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPP 240
GRGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPP
Sbjct: 181 GRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPP 240
Query: 241 SYHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGG 300
SYH GSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGG
Sbjct: 241 SYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGG 300
Query: 301 YNAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
YNAGGRGGYNAGGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSN
Sbjct: 301 YNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
Query: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA
Sbjct: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
Query: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 444
AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 452
BLAST of CaUC03G050220 vs. NCBI nr
Match:
XP_038894092.1 (transcription initiation factor TFIID subunit 15b [Benincasa hispida])
HSP 1 Score: 701.8 bits (1810), Expect = 4.8e-198
Identity = 417/447 (93.29%), Postives = 423/447 (94.63%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGYGGGGGAGYGGKGGDGGYGGGGR--GGGRG 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG G GGG GGKGGDGGYGGGGR GGGRG
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGG---GGKGGDGGYGGGGRGGGGGRG 60
Query: 61 YGGRGGGGGG--GGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCG 120
YGGRGGGGGG GG GG GGGGGYQGGDRGGRGAGR GGGGRGGSGRDGDWVCPNPGCG
Sbjct: 61 YGGRGGGGGGGYGGRGGGGGGGGGYQGGDRGGRGAGRSGGGGRGGSGRDGDWVCPNPGCG 120
Query: 121 NLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGR 180
NLNFARRVECNKCGAPSPGGASDRS GGGGGGGGYNRGG+DGGYG NRNGRGGS+HGGR
Sbjct: 121 NLNFARRVECNKCGAPSPGGASDRS--GGGGGGGGYNRGGADGGYGGNRNGRGGSYHGGR 180
Query: 181 SGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPSYHAGSADYG 240
SG HDGGRNEGGNRGGNS+GGHQGGEDS Y QVPPSSAPSSGGL GSYPPSYHAG+ADYG
Sbjct: 181 SGAHDGGRNEGGNRGGNSFGGHQGGEDSRYGQVPPSSAPSSGGLAGSYPPSYHAGTADYG 240
Query: 241 TDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGYN 300
TDAVPPPASYSGTTYPP+YG PTGGYGGD+LGDGRGAAGR GPS GYDGGYNAGGRGGYN
Sbjct: 241 TDAVPPPASYSGTTYPPSYGAPTGGYGGDSLGDGRGAAGRGGPSGGYDGGYNAGGRGGYN 300
Query: 301 AGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDEL 360
AGGRGGGSYNASGGRGGGYGSTP AEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDEL
Sbjct: 301 AGGRGGGSYNASGGRGGGYGSTPTAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDEL 360
Query: 361 RELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNN 420
RELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNN
Sbjct: 361 RELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNN 420
Query: 421 YDLRGYSINVAMAEKSAPRAPPTYNHG 444
YDLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 YDLRGYSINVAMAEKSAPRAPPTYNHG 442
BLAST of CaUC03G050220 vs. NCBI nr
Match:
XP_016902120.1 (PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Cucumis melo])
HSP 1 Score: 698.4 bits (1801), Expect = 5.3e-197
Identity = 406/446 (91.03%), Postives = 409/446 (91.70%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGRGGGR 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGRGGG
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGG- 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
GGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN
Sbjct: 61 ------------------GGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
LNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RNGRGGSFHGGRS
Sbjct: 121 LNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRNGRGGSFHGGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPSYHAGSADYGT 240
GTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPPSYH GSADYGT
Sbjct: 181 GTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPPSYHGGSADYGT 240
Query: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGYNA 300
DAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGGYNAGGRGGYNA
Sbjct: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGGYNAGGRGGYNA 300
Query: 301 GGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
GGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR
Sbjct: 301 GGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
Query: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 420
ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY
Sbjct: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 420
Query: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 444
DLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 422
BLAST of CaUC03G050220 vs. ExPASy Swiss-Prot
Match:
Q94KD0 (Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=3702 GN=TAF15B PE=1 SV=1)
HSP 1 Score: 309.3 bits (791), Expect = 9.1e-83
Identity = 255/442 (57.69%), Postives = 285/442 (64.48%), Query Frame = 0
Query: 1 MSGMYDQ---GGDAAPSYGAPGGGGGYGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGR 60
M+GMY+Q GG PSY GG GYGGGGG G GGD GYGG G GG
Sbjct: 1 MAGMYNQDGGGGAPIPSY-----------GGDGYGGGGGYG----GGDAGYGGRGASGGG 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
YGGRGG GGGGG GGGGGYQGGDRGGRG+ GG GRDGDW CPNP CGN
Sbjct: 61 SYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGS--------GGGGRDGDWRCPNPSCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
+NFARRVECNKCGA +P G S G GGGGY+RGG D G GRGG GRS
Sbjct: 121 VNFARRVECNKCGALAPSGT---SSGANDRGGGGYSRGGGDSDRG---GGRGGRNDSGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSA--PSSGGLGGSYPPSYHAGSADY 240
++ R +GG+R G SYG E+ Y Q PP +A PS G GSYPP Y
Sbjct: 181 --YESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDG-SGSYPP-----PTGY 240
Query: 241 GTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGY 300
G +AVPPP SYSG PP+YGGP GGYG D G GR G S GYDGG
Sbjct: 241 GMEAVPPPTSYSGG--PPSYGGPRGGYGSDAPSTG----GRGGRSGGYDGG--------- 300
Query: 301 NAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDE 360
+A R SY A +VKQCD +CDD+CDN+RIY+SNLPPDVT DE
Sbjct: 301 SAPRRQEASYE-------------DAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDE 360
Query: 361 LRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYN 420
L++LFGGIGQ+GRIKQKRGYKDQWP+NIKIYTDE GN KGDAC++YEDPSAAHSAGGF+N
Sbjct: 361 LKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFN 377
Query: 421 NYDLRGYSINVAMAEKSAPRAP 438
NY++RG I+V MAEKSAPRAP
Sbjct: 421 NYEMRGNKISVTMAEKSAPRAP 377
BLAST of CaUC03G050220 vs. ExPASy TrEMBL
Match:
A0A5A7UXQ0 (Transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00600 PE=4 SV=1)
HSP 1 Score: 774.2 bits (1998), Expect = 3.7e-220
Identity = 484/587 (82.45%), Postives = 491/587 (83.65%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGR---- 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGGG 60
Query: 61 GGGRGYGGRGGGGGGG-GGYGGRGG------GGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
GGGRGYGGRGGGGGGG GG GG GG GGGYQGGDRGGRGAGRGGGGGRGGSGRDG
Sbjct: 61 GGGRGYGGRGGGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
Query: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRN 180
DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RN
Sbjct: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRN 180
Query: 181 GRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPP 240
GRGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPP
Sbjct: 181 GRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPP 240
Query: 241 SYHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGG 300
SYH GSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGG
Sbjct: 241 SYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGG 300
Query: 301 YNAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
YNAGGRGGYNAGGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSN
Sbjct: 301 YNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
Query: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA
Sbjct: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
Query: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHGSF--LVFADKAEKFAIVITSFLY 480
AHSAG +YDLRGYSINVAMAEKSAPRAPPTYNHG + LV +AEK
Sbjct: 421 AHSAG----DYDLRGYSINVAMAEKSAPRAPPTYNHGFYSPLVSYARAEK---------- 480
Query: 481 THRGRKRFLLAELGQDKLQFCPIFDTIQTLVVVEVDMEVVETGAEIAIGTEALDLIDISM 540
GAEIA GTEALDLIDISM
Sbjct: 481 ------------------------------------------GAEIATGTEALDLIDISM 526
Query: 541 VEIDPVLTERFGIEHFIGRRIISKLLVAKVGVDVFSYILVGYDASIS 572
VEID VLTERFGIEHFIGRRIISKLLVAKVGVDVFSY+LVG DASIS
Sbjct: 541 VEIDRVLTERFGIEHFIGRRIISKLLVAKVGVDVFSYVLVGSDASIS 526
BLAST of CaUC03G050220 vs. ExPASy TrEMBL
Match:
A0A0A0LYC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533590 PE=4 SV=1)
HSP 1 Score: 704.5 bits (1817), Expect = 3.6e-199
Identity = 421/456 (92.32%), Postives = 425/456 (93.20%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGY--GGGGGGYGGGGGAGYGGKGGDGGYGGGGR----- 60
MSGMYDQGGDAAPSYGAPGGGGGY GGGGGGYGGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGGG 60
Query: 61 -GGGRGYGGRGGGG-----GGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGD 120
GGGRGYGGRGGGG GGGGGY G GGGYQGGDRGGRGAGRGGGGGRGGSGRDGD
Sbjct: 61 GGGGRGYGGRGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDGD 120
Query: 121 WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNG 180
WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRS GGGGGGGGYNRGG D GYG +RNG
Sbjct: 121 WVCPNPGCGNLNFARRVECNKCGAPSPGGASDRS--GGGGGGGGYNRGGGDSGYGGSRNG 180
Query: 181 RGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPS 240
RGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPPS
Sbjct: 181 RGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPPS 240
Query: 241 YHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGY 300
YH GS+DYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAA R GPSAGYDGGY
Sbjct: 241 YHGGSSDYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAARGGPSAGYDGGY 300
Query: 301 NAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL 360
NAGGRGGYNAGGR GGSYNASGGR GGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL
Sbjct: 301 NAGGRGGYNAGGR-GGSYNASGGRAGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNL 360
Query: 361 PPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA 420
PPDVT DELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA
Sbjct: 361 PPDVTTDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAA 420
Query: 421 HSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 444
HSAGGFYNNYDLRGYSINVAMAEKSAPRAPP YNHG
Sbjct: 421 HSAGGFYNNYDLRGYSINVAMAEKSAPRAPPAYNHG 453
BLAST of CaUC03G050220 vs. ExPASy TrEMBL
Match:
A0A1S3C4S9 (transcription initiation factor TFIID subunit 15b isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)
HSP 1 Score: 703.0 bits (1813), Expect = 1.0e-198
Identity = 423/457 (92.56%), Postives = 426/457 (93.22%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGR---- 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGR
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGGG 60
Query: 61 GGGRGYGGRGGGGGGG-GGYGGRGG------GGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
GGGRGYGGRGGGGGGG GG GG GG GGGYQGGDRGGRGAGRGGGGGRGGSGRDG
Sbjct: 61 GGGRGYGGRGGGGGGGYGGRGGGGGYQGGDRGGGYQGGDRGGRGAGRGGGGGRGGSGRDG 120
Query: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRN 180
DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RN
Sbjct: 121 DWVCPNPGCGNLNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRN 180
Query: 181 GRGGSFHGGRSGTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPP 240
GRGGSFHGGRSGTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPP
Sbjct: 181 GRGGSFHGGRSGTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPP 240
Query: 241 SYHAGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGG 300
SYH GSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGG
Sbjct: 241 SYHGGSADYGTDAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGG 300
Query: 301 YNAGGRGGYNAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
YNAGGRGGYNAGGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSN
Sbjct: 301 YNAGGRGGYNAGGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSN 360
Query: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA
Sbjct: 361 LPPDVTIDELRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSA 420
Query: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 444
AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 AHSAGGFYNNYDLRGYSINVAMAEKSAPRAPPTYNHG 452
BLAST of CaUC03G050220 vs. ExPASy TrEMBL
Match:
A0A1S4E2C0 (transcription initiation factor TFIID subunit 15b isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)
HSP 1 Score: 698.4 bits (1801), Expect = 2.6e-197
Identity = 406/446 (91.03%), Postives = 409/446 (91.70%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGRGGGR 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGGGGRGGG
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGGGGRGGG- 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
GGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN
Sbjct: 61 ------------------GGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
LNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RNGRGGSFHGGRS
Sbjct: 121 LNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRNGRGGSFHGGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPSYHAGSADYGT 240
GTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPPSYH GSADYGT
Sbjct: 181 GTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPPSYHGGSADYGT 240
Query: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGYNA 300
DAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGGYNAGGRGGYNA
Sbjct: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGGYNAGGRGGYNA 300
Query: 301 GGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
GGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR
Sbjct: 301 GGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
Query: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 420
ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY
Sbjct: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 420
Query: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 444
DLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 422
BLAST of CaUC03G050220 vs. ExPASy TrEMBL
Match:
A0A1S4E1L8 (transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497038 PE=4 SV=1)
HSP 1 Score: 696.4 bits (1796), Expect = 9.7e-197
Identity = 403/446 (90.36%), Postives = 406/446 (91.03%), Query Frame = 0
Query: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG---YGGGGGAGYGGKGGDGGYGGGGRGGGR 60
MSGMYDQGGDAAPSYGAPGGGGGYGGGGGG GGGGGAGYGGKGGDGGYGG
Sbjct: 1 MSGMYDQGGDAAPSYGAPGGGGGYGGGGGGGGYGGGGGGAGYGGKGGDGGYGG------- 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
GGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN
Sbjct: 61 ---------------GGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
LNFARRVECNKCGAPSPGGASDR GGGGGGGYNRGG D GYG +RNGRGGSFHGGRS
Sbjct: 121 LNFARRVECNKCGAPSPGGASDR----GGGGGGGYNRGGGDSGYGGSRNGRGGSFHGGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSAPSSGGLGGSYPPSYHAGSADYGT 240
GTHDGGRNEGG+RGGNSYGGHQGGEDSGY QVPPSSAPSSGGL GSYPPSYH GSADYGT
Sbjct: 181 GTHDGGRNEGGSRGGNSYGGHQGGEDSGYGQVPPSSAPSSGGLAGSYPPSYHGGSADYGT 240
Query: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGYNA 300
DAVPPPASYSGTTYPPTYGGPTGGYGGD+LGDGRGAAGR GPS GYDGGYNAGGRGGYNA
Sbjct: 241 DAVPPPASYSGTTYPPTYGGPTGGYGGDSLGDGRGAAGRGGPSGGYDGGYNAGGRGGYNA 300
Query: 301 GGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
GGR GGSYNASGGRGGGYGST AAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR
Sbjct: 301 GGR-GGSYNASGGRGGGYGSTQAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDELR 360
Query: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 420
ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY
Sbjct: 361 ELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYNNY 419
Query: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 444
DLRGYSINVAMAEKSAPRAPPTYNHG
Sbjct: 421 DLRGYSINVAMAEKSAPRAPPTYNHG 419
BLAST of CaUC03G050220 vs. TAIR 10
Match:
AT5G58470.1 (TBP-associated factor 15B )
HSP 1 Score: 309.3 bits (791), Expect = 6.4e-84
Identity = 255/442 (57.69%), Postives = 285/442 (64.48%), Query Frame = 0
Query: 1 MSGMYDQ---GGDAAPSYGAPGGGGGYGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGR 60
M+GMY+Q GG PSY GG GYGGGGG G GGD GYGG G GG
Sbjct: 1 MAGMYNQDGGGGAPIPSY-----------GGDGYGGGGGYG----GGDAGYGGRGASGGG 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
YGGRGG GGGGG GGGGGYQGGDRGGRG+ GG GRDGDW CPNP CGN
Sbjct: 61 SYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGS--------GGGGRDGDWRCPNPSCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
+NFARRVECNKCGA +P G S G GGGGY+RGG D G GRGG GRS
Sbjct: 121 VNFARRVECNKCGALAPSGT---SSGANDRGGGGYSRGGGDSDRG---GGRGGRNDSGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSA--PSSGGLGGSYPPSYHAGSADY 240
++ R +GG+R G SYG E+ Y Q PP +A PS G GSYPP Y
Sbjct: 181 --YESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDG-SGSYPP-----PTGY 240
Query: 241 GTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGY 300
G +AVPPP SYSG PP+YGGP GGYG D G GR G S GYDGG
Sbjct: 241 GMEAVPPPTSYSGG--PPSYGGPRGGYGSDAPSTG----GRGGRSGGYDGG--------- 300
Query: 301 NAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDE 360
+A R SY A +VKQCD +CDD+CDN+RIY+SNLPPDVT DE
Sbjct: 301 SAPRRQEASYE-------------DAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDE 360
Query: 361 LRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYN 420
L++LFGGIGQ+GRIKQKRGYKDQWP+NIKIYTDE GN KGDAC++YEDPSAAHSAGGF+N
Sbjct: 361 LKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFN 377
Query: 421 NYDLRGYSINVAMAEKSAPRAP 438
NY++RG I+V MAEKSAPRAP
Sbjct: 421 NYEMRGNKISVTMAEKSAPRAP 377
BLAST of CaUC03G050220 vs. TAIR 10
Match:
AT5G58470.2 (TBP-associated factor 15B )
HSP 1 Score: 309.3 bits (791), Expect = 6.4e-84
Identity = 255/442 (57.69%), Postives = 285/442 (64.48%), Query Frame = 0
Query: 1 MSGMYDQ---GGDAAPSYGAPGGGGGYGGGGGGYGGGGGAGYGGKGGDGGYGGGGRGGGR 60
M+GMY+Q GG PSY GG GYGGGGG G GGD GYGG G GG
Sbjct: 1 MAGMYNQDGGGGAPIPSY-----------GGDGYGGGGGYG----GGDAGYGGRGASGGG 60
Query: 61 GYGGRGGGGGGGGGYGGRGGGGGYQGGDRGGRGAGRGGGGGRGGSGRDGDWVCPNPGCGN 120
YGGRGG GGGGG GGGGGYQGGDRGGRG+ GG GRDGDW CPNP CGN
Sbjct: 61 SYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGS--------GGGGRDGDWRCPNPSCGN 120
Query: 121 LNFARRVECNKCGAPSPGGASDRSGGGGGGGGGGYNRGGSDGGYGVNRNGRGGSFHGGRS 180
+NFARRVECNKCGA +P G S G GGGGY+RGG D G GRGG GRS
Sbjct: 121 VNFARRVECNKCGALAPSGT---SSGANDRGGGGYSRGGGDSDRG---GGRGGRNDSGRS 180
Query: 181 GTHDGGRNEGGNRGGNSYGGHQGGEDSGYSQVPPSSA--PSSGGLGGSYPPSYHAGSADY 240
++ R +GG+R G SYG E+ Y Q PP +A PS G GSYPP Y
Sbjct: 181 --YESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDG-SGSYPP-----PTGY 240
Query: 241 GTDAVPPPASYSGTTYPPTYGGPTGGYGGDNLGDGRGAAGRSGPSAGYDGGYNAGGRGGY 300
G +AVPPP SYSG PP+YGGP GGYG D G GR G S GYDGG
Sbjct: 241 GMEAVPPPTSYSGG--PPSYGGPRGGYGSDAPSTG----GRGGRSGGYDGG--------- 300
Query: 301 NAGGRGGGSYNASGGRGGGYGSTPAAEPAQVKQCDDNCDDSCDNSRIYVSNLPPDVTIDE 360
+A R SY A +VKQCD +CDD+CDN+RIY+SNLPPDVT DE
Sbjct: 301 SAPRRQEASYE-------------DAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDE 360
Query: 361 LRELFGGIGQIGRIKQKRGYKDQWPWNIKIYTDEMGNNKGDACVSYEDPSAAHSAGGFYN 420
L++LFGGIGQ+GRIKQKRGYKDQWP+NIKIYTDE GN KGDAC++YEDPSAAHSAGGF+N
Sbjct: 361 LKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFN 377
Query: 421 NYDLRGYSINVAMAEKSAPRAP 438
NY++RG I+V MAEKSAPRAP
Sbjct: 421 NYEMRGNKISVTMAEKSAPRAP 377
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060008.1 | 7.6e-220 | 82.45 | transcription initiation factor TFIID subunit 15b isoform X3 [Cucumis melo var. ... | [more] |
XP_011658817.1 | 7.4e-199 | 92.32 | transcription initiation factor TFIID subunit 15b [Cucumis sativus] | [more] |
XP_008457317.1 | 2.1e-198 | 92.56 | PREDICTED: transcription initiation factor TFIID subunit 15b isoform X1 [Cucumis... | [more] |
XP_038894092.1 | 4.8e-198 | 93.29 | transcription initiation factor TFIID subunit 15b [Benincasa hispida] | [more] |
XP_016902120.1 | 5.3e-197 | 91.03 | PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Cucumis... | [more] |
Match Name | E-value | Identity | Description | |
Q94KD0 | 9.1e-83 | 57.69 | Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UXQ0 | 3.7e-220 | 82.45 | Transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo var... | [more] |
A0A0A0LYC4 | 3.6e-199 | 92.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533590 PE=4 SV=1 | [more] |
A0A1S3C4S9 | 1.0e-198 | 92.56 | transcription initiation factor TFIID subunit 15b isoform X1 OS=Cucumis melo OX=... | [more] |
A0A1S4E2C0 | 2.6e-197 | 91.03 | transcription initiation factor TFIID subunit 15b isoform X2 OS=Cucumis melo OX=... | [more] |
A0A1S4E1L8 | 9.7e-197 | 90.36 | transcription initiation factor TFIID subunit 15b isoform X3 OS=Cucumis melo OX=... | [more] |