CaUC02G049770 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G049770
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NusB domain-containing protein
Location	Ciama_Chr02: 37468987 .. 37474440 (+)
RNA-Seq Expression	CaUC02G049770
Synteny	CaUC02G049770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATTCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACGCTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGTTTCTCTTTCATTTGCCATTTCTATGTCCTTCCCCTTCTTCTGCTCTCTATCCTTTACCTACTCCTCTGTTTCCTTTTCAATTCAAACTCTGCTTCCTAAATCTTGCTCACTATGATCACCATGTAAGCAGAATTAAGGAATTAATGGTGAATCTTGGCTAAATTCATGTCAATCGTTTTTAGTTTCTTATTTTGAATTTTAATTCCTCTTTAATTTCCTTTTAGGATTTCATTCTCGCCCTCCCTCATGCATTCTCTACGACTTTGATTCATAATAATAAGTTTTTTTTTTTTTTTTTTGCATAAGAAATTCATAATAATAAGTTTTGAAATTTGATTCTTGGAGAATTCTTTCCTTTGGGTCCTTTAAGCTACATCAGTTCACCAACAATTGACCTCTCTGTTTATTTCGCACGCTTACAAATTTGAATTGTGAAATGGAAACCATAGGATGTGGCATGTCTCTTCACTTCATACTAGTTACTCCCTCTGTATACTTGCATTATCTTTAAGACTTTCCAGATGGTGGATGCTGGGTCAATGCGTAACATTTGCTTTAAAGGTTGTTTTTTGGGTCTTTCCTTAGTAGTCTGAAGTTAGGCTATACCAGATGGCACCTGGATGGGACATCGAGATAACACGACCGCCATTTTATACTGGTCAACAGTAACGAACTTGGTTTTATGTAATGCAATCTATGGTTACTACGTTGAAAAACACTGCTGAAACTAAAAGCTTCTTCGTCCAAATACTCTCTCACTTGTGAGCTTGGAATAAGCTTAAGAACTTAGGGTGTGATTGTGGAGAGGAATTGGGAGAGGTGGAGTTGTTTGGCCGAAGGAGTTATTAAAAGCATTGTAAATCCCATGACTCATTAGCATCGATTCCACATTTATTAACTCCTTAAATTGTGGTTTATGACTAAACAACTTTTACTCCTCACTCTCTTATAAGTTATGGTAAATTTAATGAGTAATTTATATTCTTGACAGCACTAGACTATTGGATATTAATTGACACAGCTGCTAGAGGCAAGGGTGAAATTTGATGCCAGAAAATTGTCTTATTGTTATTTTACCTAGTTTTTCTTAAAGAAAGTAAAAGGGAAAAAAGAAAGAGAAAGATATAGTCCATGATTTCTAGATATCTCTTGAAAACGTGACTTAACTTAGCATGCCTAATTTTCATTCTTGCTCTTCGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCATCATTTCCTTTTTTTTTTTTTCCTAACATATGAATATCTCCTCTCTACCTTTTTACCTATTCAAAAAGTTGGCCTACTCACCCAGAATATACTCTAATCAATTCTAATTCGGATTATTCGATCACAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGGTAATCTATGGTTGAGACATGATACATGGTTTCTATTGCCGCCCCATATATACTATTTGGTGTCTGTGTGTTTTTTATATATTTATATAATTTCAAAAAATATAAAAAAAAGATTGTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACTTCTTGCTTTATTTGTTTGTACAATTCAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGGTAAACAATTACGTGACCTTCGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTATATTAAAAACAGAATTGGACCCTAAAAGAGACAAAACTTTTTAGAGGAAAAGAGAGACTACCGCTGAAAGGATACAAATTCCTAAATTCCTAAAGGAGTAAAAATGAAAAAGAAAAGCATAGGAATATAAAGATTCCACAAACCATAACAAATGATATTCTTAAAAAATACATTAACGTCAAGCATGGGTATGAACGTCGAGTTGCCCATAGAAGTTGGAGTAGATGTCCAAAAGCTCCAACAAGTATTGAAAAATTGCAATCTTCTGTTTAGGTAACTTTATTTGACAAAGAAGCTTTTCCTTCTAAATTTTAACCTCTTCTTCATCAAGAAGTGCTATTAACGCTGATTAAATAACAGGACTGTATTAGGTTCCATGAGAAATGTTGAAAATAAAACTCAAAGAGGCCCTTGAAGATAAAATTCTCACATCGTTGAAATGGATATATAGAGGGGAGAAATGCCAAAAAACTCTTGAACTTCCAGAAGAAAAGTTTCAACTCTTTTTATTTTTTATTTTTATATAATTAATGCAGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCACTATGGATCAATGCAAAAGGGTCAGAAGATTTGCAGGGCACACATGGATAAATATTTTTGGTATGTTTGGAGAGTTGACAAATCTTGCACTGAAAATGACTTGATTTCTTATTAATGAATAACCGAGGTAACAATTTTTCAAATATGAAAAATTTGGATGACCGAGACAAAAGTTCTACAACATGACTTTGCCTTAACAAGACAAGGATTTAAAACTGGAAGTAGATTCGGGAATAAGGGTATGTTTGGAATACATTTTCAAGTGTTTAATTTAAAAAATAAGTCATTTTGAAGTGTATTTTGAACGGTTTTTATAAAAAGAGTTATAAAAATGAGTTTTTTGAAAATTACTTTTTCCTCAAGTCAATCCAAATAGGCCCTAAAACTACAAAATTGAGAAAATACTCACAACTAAGACTGGAAGATGATTTTGAAGGATTAACCACAAATTTGACGGAGGGATCAAGGATTCTACCAAAAGCAAAACTCAAAGGGCAAAATGTCACTCTTGAAAATTTAGAAACCCAAATGCAACCAAACCCAAAACTTAGGAACTAAAGTTTATTTTTCCCATGTGTTTTCTATAGTTGTAAATGCAGTATTGTCTAGCCTCAAAGTCCGATTTTATTGCGGTTAGTATTAAAGTTCTGTTTTCTGCATGACCGTATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTAAACGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGACAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCAAGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTGAAAAAAGCTTGTTTCTTTTTGCTAATTTATTTTCTGATTTTCTCTTCTCTTCTAGTTGGGAATATACGTTGAACCATTTATCATGCGATTATAATACTCCTGGATCATTGCCTCATAATCATAGCATATGTGTGCTTTTTACAACACTTACAGAAATTTGAAAAGCTTTGTATGATGGTGTCAAGGATGGAACCACAAACACATGTGCAATATTTCATCCATGGATATTGTTGAATTTCTCGTGTGTTAGAAACTCTGAGCTTTAATTATCGAAGGTTTGAGCTTAGTGATAAACATCCTTGGACTCACAAACAGTTAATGGTTTCAAAATTTGTTGGATCTCCATTCCAGAATTTTATATCTTACAGGTTCTTGACAACATAATTATATAGTCTTCCAAGTTTGAACCCAGAAAATATTAAGCTATTGGTGTTTTTATAGGGTTAAAATAAAACCTTTAGCAACCATCATAAGACAGCCTAGTGGTAAATAAGGGAACATTCCCTTGATGTAGGGCTAAGAGGTCATGGGTTCAATCTATGGCGGCCACCTACCTAGGATTTAATTTCTTGTGAGTTTCATTGATACCCAAATCCATGGTAATCACCTATTTAAGATTTAATATCTCACGAGTTTCCTTGACACCAAAATGTTGTAGAGTTAAGCGAACCTTTAGCCTTTAGCCTTGAGAACATGAATTTTGTCAATAGTCATCTAGATATGCAACTAGGTTAAGCGCTATACAAAAGTATTGTCATGCTATCAAATTTTTTCTTTTCTAAAAAAGTGTACTTTTCAATAACCAAAGTTGTTGAAGCTTCCAGTTTCTCTGTGTTTGTTTATTTCATATGCTCTGAATAGTCGTGAACCTAAATTTGAATAATGTTATCTTTTGTTAATTATTTTTTGTTTGAATTCAGTAAAGAGATCAACCCATCTAAACCTTTGAAATGGTAGTTGATGAATTACCTATTGAGCTATGTTTGTAATGACATGTTTTGTTATTCTATTAAATTAATCATTCCGGCCTTTAAGTTATTCGTTATTCAGACATTGCAGTTGCGTGAATCCAAACCAAAGATCATGCGCTTGGACTTGAACTTCTTGAATTAAGTTGCAGATTTTTATGAATGTTTAAGATTTGTAATTTGTAAAGGTTCGGGAGTTTAAATATCACATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGTAAATGCGTCTTGAGCCATCTTACTTGAAGGTCTGTTGATATATATCTAACATCAATTCTCTTTTTGTTTAAAAAAATAATAATAATTGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGA

mRNA sequence

ATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATTCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACGCTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGA

Coding sequence (CDS)

ATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATTCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACGCTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGA

Protein sequence

MSLAPPTSPYPFPKFCLPNHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQPGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA

Homology

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BLAST of CaUC02G049770 vs. NCBI nr
Match: XP_038901769.1 (uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida])

HSP 1 Score: 610.1 bits (1572), Expect = 1.3e-170
Identity = 326/403 (80.89%), Postives = 336/403 (83.37%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKFCLPNHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQ 60
           MSLAPP SPY       P PK CLP+HLSS TQ   SH KLFP  SL H SFSTS STL 
Sbjct: 1   MSLAPPISPYLYSSHSHPLPKSCLPSHLSSLTQ--CSHSKLFPSHSLSHRSFSTSSSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           SLK        + +GL D   ADQ                  PG SAD TGLFT GDKV 
Sbjct: 61  SLKSK------THVGLGDLGDADQPCEEYEVELEQLSGLDFAPGASADNTGLFTVGDKVI 120

Query: 121 TIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSI 180
           T RPNFHFS HISGICRFPFRASSIVPH KD M HLCPQASLRASTSF ENCVAE+R+SI
Sbjct: 121 TTRPNFHFSLHISGICRFPFRASSIVPHVKDSMTHLCPQASLRASTSFPENCVAEDRSSI 180

Query: 181 AVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFD 240
           +VSS+ETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN RRE GYEFD
Sbjct: 181 SVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNTRRELGYEFD 240

Query: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTR 300
           KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDS IEAEILAAPPKMVYSKLILRFTR
Sbjct: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSIIEAEILAAPPKMVYSKLILRFTR 300

Query: 301 KLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEA 360
           KLLVAVVDGWDSRVLKIEKVIPPTWK+KPA RILELCILHLAMSEITVIGTRHQIVINEA
Sbjct: 301 KLLVAVVDGWDSRVLKIEKVIPPTWKDKPARRILELCILHLAMSEITVIGTRHQIVINEA 360

Query: 361 VDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 379
           VDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS+HA +KQEVRA
Sbjct: 361 VDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSSHAREKQEVRA 395

[Close]

BLAST of CaUC02G049770 vs. NCBI nr
Match: XP_008449897.1 (PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo])

HSP 1 Score: 592.0 bits (1525), Expect = 3.5e-165
Identity = 320/399 (80.20%), Postives = 332/399 (83.21%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS Y +     P   +HLSS TQ   SHP LFP R LFHLSFSTSFSTL S K 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLHSFKS 60

Query: 61  SPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVTTIRP 120
           S F     DIGL DS  A Q                  PG SA KT LF  GDKV T RP
Sbjct: 61  SAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRP 120

Query: 121 NFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSS 180
           NFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSS
Sbjct: 121 NFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSS 180

Query: 181 IETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSL 240
           IETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSL
Sbjct: 181 IETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSL 240

Query: 241 MEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLV 300
           MEYNHMSFGGPPVTVET+EEADELLRKDE+DSTIEAEILAAPPKMVYSKLILRFTRKLLV
Sbjct: 241 MEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLV 300

Query: 301 AVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA 360
           AVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA
Sbjct: 301 AVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA 360

Query: 361 KRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 379
           KRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 361 KRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 394

[Close]

BLAST of CaUC02G049770 vs. NCBI nr
Match: XP_004149639.3 (uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815.1 uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >KGN54018.1 hypothetical protein Csa_021656 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 3.3e-163
Identity = 315/383 (82.25%), Postives = 326/383 (85.12%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS YP+     P   +HLSS TQ   SHP  F     FHLSFSTSFSTL SLK 
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQ--RSHPNFFSLCFPFHLSFSTSFSTLHSLKY 60

Query: 61  SPFIARASDIGLRDSVHADQ-------PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGI 120
           S F    +D GL DS  ADQ       PG SA KT LFT GDKV T RPNFHFSYHISGI
Sbjct: 61  SAF---KTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGI 120

Query: 121 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 180
           C+FPF ASSIVPH KD MP  C QASLRASTSFSEN VAEER+SI++SSIE IPKVDKSG
Sbjct: 121 CQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSG 180

Query: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240

Query: 241 PVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVL 300
           PVTVET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DGWDSR L
Sbjct: 241 PVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRAL 300

Query: 301 KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI 360
           KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI
Sbjct: 301 KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI 360

Query: 361 INGCLRTFVKDIKEIDSTHAGDK 374
           INGCLRTFVKDIKEIDS  A +K
Sbjct: 361 INGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of CaUC02G049770 vs. NCBI nr
Match: TYK21741.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 556.2 bits (1432), Expect = 2.1e-154
Identity = 296/361 (81.99%), Postives = 306/361 (84.76%), Query Frame = 0


Query: 36  PPRSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQ------------------ 95
           PP  L    FSTSFSTL S K S F     DIGL DS  A Q                  
Sbjct: 4   PPNPL----FSTSFSTLHSFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFA 63

Query: 96  PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASL 155
           PG SA KT LFT GDKV T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASL
Sbjct: 64  PGASAHKTRLFTVGDKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASL 123

Query: 156 RASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPV 215
           RASTSF EN VAEER+SI+VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPV
Sbjct: 124 RASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPV 183

Query: 216 RLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEI 275
           RLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DSTIEAEI
Sbjct: 184 RLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEI 243

Query: 276 LAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLA 335
           LAAPPKMVYSKLILRFTRKLLVAVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLA
Sbjct: 244 LAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLA 303

Query: 336 MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVR 379
           MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVR
Sbjct: 304 MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVR 357

[Close]

BLAST of CaUC02G049770 vs. NCBI nr
Match: KAA0040119.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 545.8 bits (1405), Expect = 2.9e-151
Identity = 320/508 (62.99%), Postives = 332/508 (65.35%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS Y +     P   +HLSS TQ   SHP LFP R LFHLSFSTSFSTL S K 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLHSFKS 60

Query: 61  SPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVTTIR- 120
           S F     DIGL DS  A Q                  PG SA KT LF  GDKV T R 
Sbjct: 61  SAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRF 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FFLCPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLSSLKF 180

Query: 181 ------------------------------------------------PNFHFSYHISGI 240
                                                           PNFHFS HISGI
Sbjct: 181 GYTRWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNHISGI 240

Query: 241 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 300
           C+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSSIETIPK+DKSG
Sbjct: 241 CQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSG 300

Query: 301 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 360
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 301 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGP 360

Query: 361 PVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVL 379
           PVTVET+EEADELLRKDE+DSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWD+R L
Sbjct: 361 PVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRAL 420

[Close]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 291 KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 350
           KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 351 RIINGCLRTFVKDI 363
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.3e-05
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 279 VAVVDGWDSRVLK---IEKVIPPTWKNKPAGR--ILELCILHLAMSEITVIGTRHQIVIN 338
           +  ++ +D+  LK   +++++ P  K K   R  I+EL IL L + E+   GT   ++IN
Sbjct: 43  IQALETFDAICLKKGELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIIN 102

Query: 339 EAVDLAKRFCDGAAPRIINGCL 356
           EA++LAK     +AP+ ING L
Sbjct: 103 EAIELAKELGGDSAPKFINGVL 124

[Close]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.6e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 300 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 359
           W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F 
Sbjct: 145 WQLKRLAKI-DQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGYRFINGVLRRFT 204

Query: 360 KDIK 364
             IK
Sbjct: 205 DHIK 207

[Close]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot
Match: A6QBK6 (Transcription antitermination protein NusB OS=Sulfurovum sp. (strain NBC37-1) OX=387093 GN=nusB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 273 FTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVI 332
           F+  L    ++  +    +IEK +   W     GR+ E  IL L   EI V  T   I+I
Sbjct: 45  FSHDLFDGTIENLEMLDAEIEKHL-TDWDYDAIGRV-EKAILRLGAYEILVAKTDRAIII 104

Query: 333 NEAVDLAKRFCDGAAPRIINGCL 356
           NEAV+LAK   D  +P+ ING L
Sbjct: 105 NEAVELAKSLADEKSPQFINGVL 125

[Close]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot
Match: Q8GIR7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 309 LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 357
           L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Sbjct: 149 LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRRFINGVLR 196

[Close]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL
Match: A0A1S3BNR2 (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.7e-165
Identity = 320/399 (80.20%), Postives = 332/399 (83.21%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS Y +     P   +HLSS TQ   SHP LFP R LFHLSFSTSFSTL S K 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLHSFKS 60

Query: 61  SPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVTTIRP 120
           S F     DIGL DS  A Q                  PG SA KT LF  GDKV T RP
Sbjct: 61  SAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRP 120

Query: 121 NFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSS 180
           NFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSS
Sbjct: 121 NFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSS 180

Query: 181 IETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSL 240
           IETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSL
Sbjct: 181 IETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSL 240

Query: 241 MEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLV 300
           MEYNHMSFGGPPVTVET+EEADELLRKDE+DSTIEAEILAAPPKMVYSKLILRFTRKLLV
Sbjct: 241 MEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLV 300

Query: 301 AVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA 360
           AVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA
Sbjct: 301 AVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLA 360

Query: 361 KRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 379
           KRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 361 KRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 394

[Close]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL
Match: A0A0A0KWZ5 (NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.6e-163
Identity = 315/383 (82.25%), Postives = 326/383 (85.12%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS YP+     P   +HLSS TQ   SHP  F     FHLSFSTSFSTL SLK 
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQ--RSHPNFFSLCFPFHLSFSTSFSTLHSLKY 60

Query: 61  SPFIARASDIGLRDSVHADQ-------PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGI 120
           S F    +D GL DS  ADQ       PG SA KT LFT GDKV T RPNFHFSYHISGI
Sbjct: 61  SAF---KTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGI 120

Query: 121 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 180
           C+FPF ASSIVPH KD MP  C QASLRASTSFSEN VAEER+SI++SSIE IPKVDKSG
Sbjct: 121 CQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSG 180

Query: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240

Query: 241 PVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVL 300
           PVTVET+EEADELLRKDE+DSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DGWDSR L
Sbjct: 241 PVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRAL 300

Query: 301 KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI 360
           KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI
Sbjct: 301 KIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRI 360

Query: 361 INGCLRTFVKDIKEIDSTHAGDK 374
           INGCLRTFVKDIKEIDS  A +K
Sbjct: 361 INGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL
Match: A0A5D3DDJ4 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001130 PE=3 SV=1)

HSP 1 Score: 556.2 bits (1432), Expect = 1.0e-154
Identity = 296/361 (81.99%), Postives = 306/361 (84.76%), Query Frame = 0


Query: 36  PPRSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQ------------------ 95
           PP  L    FSTSFSTL S K S F     DIGL DS  A Q                  
Sbjct: 4   PPNPL----FSTSFSTLHSFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFA 63

Query: 96  PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASL 155
           PG SA KT LFT GDKV T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASL
Sbjct: 64  PGASAHKTRLFTVGDKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASL 123

Query: 156 RASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPV 215
           RASTSF EN VAEER+SI+VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPV
Sbjct: 124 RASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPV 183

Query: 216 RLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEI 275
           RLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DSTIEAEI
Sbjct: 184 RLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEI 243

Query: 276 LAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLA 335
           LAAPPKMVYSKLILRFTRKLLVAVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLA
Sbjct: 244 LAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLA 303

Query: 336 MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVR 379
           MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVR
Sbjct: 304 MSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVR 357

[Close]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL
Match: A0A5A7TFT7 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00940 PE=3 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.4e-151
Identity = 320/508 (62.99%), Postives = 332/508 (65.35%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKFCLP---NHLSSSTQSSSSHPKLFPPRSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS Y +     P   +HLSS TQ   SHP LFP R LFHLSFSTSFSTL S K 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKSHLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLHSFKS 60

Query: 61  SPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVTTIR- 120
           S F     DIGL DS  A Q                  PG SA KT LF  GDKV T R 
Sbjct: 61  SAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVITTRF 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FFLCPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLSSLKF 180

Query: 181 ------------------------------------------------PNFHFSYHISGI 240
                                                           PNFHFS HISGI
Sbjct: 181 GYTRWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNHISGI 240

Query: 241 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 300
           C+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSSIETIPK+DKSG
Sbjct: 241 CQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKIDKSG 300

Query: 301 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 360
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 301 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGP 360

Query: 361 PVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVL 379
           PVTVET+EEADELLRKDE+DSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWD+R L
Sbjct: 361 PVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRAL 420

[Close]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL
Match: A0A1S4DXQ5 (uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 2.0e-142
Identity = 258/280 (92.14%), Postives = 268/280 (95.71%), Query Frame = 0


Query: 99  PNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVS 158
           PNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VS
Sbjct: 15  PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 74

Query: 159 SIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 218
           SIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTS
Sbjct: 75  SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 134

Query: 219 LMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLL 278
           LMEYNHMSFGGPPVTVET+EEADELLRKDE+DSTIEAEILAAPPKMVYSKLILRFTRKLL
Sbjct: 135 LMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLL 194

Query: 279 VAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 338
           VAVVDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL
Sbjct: 195 VAVVDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDL 254

Query: 339 AKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 379
           AKRFCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 255 AKRFCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 294

[Close]

BLAST of CaUC02G049770 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 324.7 bits (831), Expect = 9.8e-89
Identity = 160/215 (74.42%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 163 IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEY 222
           +PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 223 NHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVV 282
           NHMSFGGPPV  ET EE DEL+R DEK+S IEAE+L+APPK+VYSKL+LRF +KLL AVV
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 204

Query: 283 DGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRF 342
           D WDS V+ IEK+ PP WK+ PAGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRF
Sbjct: 205 DKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRF 264

Query: 343 CDGAAPRIINGCLRTFVKDIKEIDSTHAGD-KQEV 377
           CDG+APRIINGCLRTFVKD     +  A + KQEV
Sbjct: 265 CDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 299

[Close]

BLAST of CaUC02G049770 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-36
Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 163 IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEY 222
           +PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 223 NHMSFGGPPVTVETVEEADELLRKDEKDSTIEAEIL 259
           NHMSFGGPPV  ET EE DEL+R DEK+S I   ++
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIGRSLI 180

The following BLAST results are available for this feature:

BLAST of CaUC02G049770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901769.1	1.3e-170	80.89	uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]	[more]
XP_008449897.1	3.5e-165	80.20	PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]	[more]
XP_004149639.3	3.3e-163	82.25	uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815....	[more]
TYK21741.1	2.1e-154	81.99	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]
KAA0040119.1	2.9e-151	62.99	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]

BLAST of CaUC02G049770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	3.5e-06	39.19	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
A7GWZ7	2.3e-05	35.37	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
B1WXY6	6.6e-05	43.75	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]
A6QBK6	1.9e-04	37.35	Transcription antitermination protein NusB OS=Sulfurovum sp. (strain NBC37-1) OX...	[more]
Q8GIR7	1.9e-04	52.08	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]

BLAST of CaUC02G049770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNR2	1.7e-165	80.20	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KWZ5	1.6e-163	82.25	NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 S...	[more]
A0A5D3DDJ4	1.0e-154	81.99	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G0011...	[more]
A0A5A7TFT7	1.4e-151	62.99	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G0094...	[more]
A0A1S4DXQ5	2.0e-142	92.14	uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CaUC02G049770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	9.8e-89	74.42	antitermination NusB domain-containing protein	[more]
AT4G26370.2	2.5e-36	73.96	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 175..373 e-value: 2.2E-19 score: 71.7
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 173..363
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 274..360 e-value: 2.3E-11 score: 44.1
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 54..370

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G049770.1	CaUC02G049770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding