CaUC02G049720 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G049720
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 37422967 .. 37424668 (-)
RNA-Seq ExpressionCaUC02G049720
SyntenyCaUC02G049720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGGTAGAAAGAAAAAGGCCGAAACTTTGGAATGGTAAGAAAATCCTCGATAAAGTTGCTGTGTCGAGTTTGAGAGATTGAAGAATACGCAGAGGCCACCAAATTAGGAAAGGATAATGCAGCGAAGAGATTGAAAAGGGAAAGGAAGGGAGAGGGAAAAATCAAGTTGAAGGAATAGAGACGAACGCAGAGCCAATTCAGTAATCAGGCATATTATCGACAGAAGCGATGGTATTTAACAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGAATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACGTCTCTTCTTACGACTATGCTTCCGACTGACTTTTGTTTCTGGTAATTTTCTCCCCTTTTCTTCATTGATGAGATGGCGCCTTTCCAATTTCTGCTTCTGGGTTTTCATTTTTCCTTTCCCGGAGTACGGTTATCTGTGCTTTGTATTATAATACGATAATTAATCTGCTCATGTTGTATCTCCTACATTTCAAATTATTGCATTCTTTGTGGTTTTCCGGCTACCACTTAATTTTATTAAATCTTCGTTGTTATCGTGGTCAATGGACATGGTTAACTAAAGAGTCATTATACTACCTCTTTTCTTGGGCTTCATCATAAATATCACACACATGCTTAATATTTGAAATGGAGTGCTCATTTTACTCTCTAGCTAACGGATTTCACTTTTATTGGCTATGTTGTTGGAGGAGGGTAGAACTTTAGTCATAAGGAAAGCCTTCTTTTTACTTTTCCCATTTTCTTGCCCCCACCATTGTAGAATGTGATCAATTGGCATTGCATTTAAAAGCTCAAGTTCTTAGATCAACTCCAAAACATGGATGATTAGTATGAAGAGAGGAAGGGAATAACTCTTGAGGAATTTGAACATGGGGTCTGGACAATGCCACTACAGTCAAATAATTATCTTGTAGGCTAGTATAAAAATGTAATTGACTTAGTAAAATATTTCCAATGGTACGATTAAGATTATCTGTGAGATCTAAAAATCATAATTATGACAAAGAAAAGAATTTTCTTTCCTTTGTTTTATTATTGTTGTTACAATTGCATTCCTTTTATTTGTTGTTGCCTATCCTTTCCTTTGTTTTATTGTTTATCACACTGTTCTTTTTTCTGTCTCCAATTCTTCTGCTTATATTTGTATCTACCACTTTCTCTCTTTCCATATCCAAGTTGGATTGAGCACAACTTTATTACGTATTTGGTCTTTCAGATCTTTTCTTAACAACAAGAAGCATATCCATCAGATATAGGATCGTTGTTTAATGTCCCAACACTTGAGAGACCTCTAATTATCTGTAGGTTTTATTTATGTGGATCTAATGAGAAGATGAATAACAACTAGTTTCGTTATAATAAAATATGGATCAAACATTTCTGTGGTTTGTGAGTTACAAAGGATTAATTGTTCTTAGAATGTGAGTTTCAGGGTAGTTCGTGTCTAATAGGGATTGGGGAATACATTGGCTCTGCAAGACGGGGATTTGGGTTCAAATAATGCATGCAGGAAAATTTCTTGTATTTTGA

mRNA sequence

GACGGTAGAAAGAAAAAGGCCGAAACTTTGGAATGGTAAGAAAATCCTCGATAAAGTTGCTGTGTCGAGTTTGAGAGATTGAAGAATACGCAGAGGCCACCAAATTAGGAAAGGATAATGCAGCGAAGAGATTGAAAAGGGAAAGGAAGGGAGAGGGAAAAATCAAGTTGAAGGAATAGAGACGAACGCAGAGCCAATTCAGTAATCAGGCATATTATCGACAGAAGCGATGGTATTTAACAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGAATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACGTCTCTTCTTACGACTATGCTTCCGACTGACTTTTGTTTCTGGGATTGGGGAATACATTGGCTCTGCAAGACGGGGATTTGGGTTCAAATAATGCATGCAGGAAAATTTCTTGTATTTTGA

Coding sequence (CDS)

ATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACGTCTCTTCTTACGACTATGCTTCCGACTGACTTTTGTTTCTGGGATTGGGGAATACATTGGCTCTGCAAGACGGGGATTTGGGTTCAAATAATGCATGCAGGAAAATTTCTTGTATTTTGA

Protein sequence

MLRNALLAFQIASRATNFFTFSSVSLFNSSLTLPSLFGPSSVFLLLVPSTITTPLTPTSLLTTMLPTDFCFWDWGIHWLCKTGIWVQIMHAGKFLVF
Homology
[Close]
BLAST of CaUC02G049720 vs. NCBI nr
Match: KAG6605832.1 (hypothetical protein SDJN03_03149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-05
Identity = 42/72 (58.33%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 1  MLRNALLAFQIASRATNFFTFSSVSLFNSSLTLPSLFGPSSVFLLLVPSTITTPLTPTSL 60
          M RNAL    IAS ATNFF FSS +LFNSSL  PSL+G S  FL  VPSTITT  TP + 
Sbjct: 1  MHRNALHDLPIASPATNFFMFSSATLFNSSLASPSLYGLSYAFLHRVPSTITT--TPPT- 60

Query: 61 LTTMLPTDFCFW 73
           T   P +F  W
Sbjct: 61 -TIPHPNEFSLW 68

The following BLAST results are available for this feature:
BLAST of CaUC02G049720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605832.16.2e-0558.33hypothetical protein SDJN03_03149, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CaUC02G049720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G049720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G049720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G049720.1CaUC02G049720.1mRNA