CaUC02G048790 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G048790
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 36601887 .. 36602165 (+)
RNA-Seq ExpressionCaUC02G048790
SyntenyCaUC02G048790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

mRNA sequence

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Coding sequence (CDS)

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Protein sequence

MKIPRVAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK
Homology
BLAST of CaUC02G048790 vs. NCBI nr
Match: KGN54151.1 (hypothetical protein Csa_017955 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

BLAST of CaUC02G048790 vs. NCBI nr
Match: KAG7035836.1 (hypothetical protein SDJN02_02635, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 31 HRSAHHLLPTGLIESRR-LLLPSLSSFSTNGNKMNAKMKDGRRSAETSLRVAPPSKSNPT 90
          H S H  LPT  IESRR LLL SLSSFSTN NK        + +  TSLRVAPPSKSNPT
Sbjct: 6  HESVH--LPTPRIESRRLLLLSSLSSFSTNRNKTKTGSTGAKSADATSLRVAPPSKSNPT 65

Query: 91 QNK 93
          QNK
Sbjct: 66 QNK 66

BLAST of CaUC02G048790 vs. NCBI nr
Match: KAG6605894.1 (hypothetical protein SDJN03_03211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 31 HRSAHHLLPTGLIESRR-LLLPSLSSFSTNGNKMNAKMKDGRRSAETSLRVAPPSKSNPT 90
          H S H  LPT  IESRR LLL SLSSFSTN NK        + +  TSLRVAPPSKSNPT
Sbjct: 6  HESVH--LPTPRIESRRLLLLSSLSSFSTNRNKTKTGSTGAKSADATSLRVAPPSKSNPT 65

Query: 91 QNK 93
          QNK
Sbjct: 66 QNK 66

BLAST of CaUC02G048790 vs. NCBI nr
Match: DAD43194.1 (TPA_asm: hypothetical protein HUJ06_001424 [Nelumbo nucifera])

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL      +L  +L+C  + +HH   +    P   I+SRRLLL S +S S N  K+N K 
Sbjct: 7  ALAALLTLVLFHLLMCSVLSLHHESKS----PRERIQSRRLLL-SAASVSVNLKKLNGKN 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          K+ +++ ETSLR APPS SNP QNK
Sbjct: 67 KEPKKAVETSLRRAPPSVSNPIQNK 86

BLAST of CaUC02G048790 vs. NCBI nr
Match: KAB2016365.1 (hypothetical protein ES319_D08G092100v1 [Gossypium barbadense] >KAG4133285.1 hypothetical protein ERO13_D08G087800v2 [Gossypium hirsutum] >KJB23317.1 hypothetical protein B456_004G092400 [Gossypium raimondii] >TYI68517.1 hypothetical protein E1A91_D08G094200v1 [Gossypium mustelinum])

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

BLAST of CaUC02G048790 vs. ExPASy TrEMBL
Match: A0A0A0L1X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.7e-23
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

BLAST of CaUC02G048790 vs. ExPASy TrEMBL
Match: A0A5D2PCY3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G093000v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVRYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

BLAST of CaUC02G048790 vs. ExPASy TrEMBL
Match: A0A0D2MVS6 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G092400 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

BLAST of CaUC02G048790 vs. ExPASy TrEMBL
Match: A0A5J5UQ36 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A08G085400v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 7  ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVRYQPRR-LLGSLASVSANLNKLSGAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 67 QDPNKAVGTSLRKAPPSASNPTQNK 88

BLAST of CaUC02G048790 vs. ExPASy TrEMBL
Match: A0A5J5QBY6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D08G092100v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54151.11.8e-2270.97hypothetical protein Csa_017955 [Cucumis sativus][more]
KAG7035836.14.8e-0765.08hypothetical protein SDJN02_02635, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605894.14.8e-0765.08hypothetical protein SDJN03_03211, partial [Cucurbita argyrosperma subsp. sorori... [more]
DAD43194.12.6e-0544.71TPA_asm: hypothetical protein HUJ06_001424 [Nelumbo nucifera][more]
KAB2016365.15.8e-0544.71hypothetical protein ES319_D08G092100v1 [Gossypium barbadense] >KAG4133285.1 hyp... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1X38.7e-2370.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1[more]
A0A5D2PCY32.8e-0544.71Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G093000v1 P... [more]
A0A0D2MVS62.8e-0544.71Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G092400 PE=4 ... [more]
A0A5J5UQ362.8e-0544.71Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A08G085400v1 PE... [more]
A0A5J5QBY62.8e-0544.71Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D08G092100v1 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G048790.1CaUC02G048790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane