CaUC02G047710 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G047710
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Poly(A)-specific ribonuclease
Location	Ciama_Chr02: 35496380 .. 35496824 (+)
RNA-Seq Expression	CaUC02G047710
Synteny	CaUC02G047710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGAATTGAATTGTGATAGAGGAAGTTATTGAGTTTGAGTTTGGGAACTTGGGAATTGGCAGGCACACCTCATTTTGACGTTTAATTAACCATAGTAAATGTGCTTTTGCGTTACAACTGGGAAAGCATCTACGCCCATTCCTTCATTCTCATCCCACACTTTCACTTCCGTCAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA

mRNA sequence

ATGAAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA

Coding sequence (CDS)

ATGAAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA

Protein sequence

MKVWDFNLIQSPPPSMDTEFPGFLIRPSHHYLLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRLLCNHSLTCPPP

Homology

[Close]

BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 64/145 (44.14%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 2   KVWDFNL-----------IQSPPPSMDTEFPGFLI---------RPSHHYL--------- 61
           +VWDFNL            + P  SMDTEFPG +I         RPS HYL         
Sbjct: 7   QVWDFNLDYEFNLINHLFHRFPFISMDTEFPGVVIRPALHRPRLRPSDHYLLLKSNVDAL 66

Query: 62  ---------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 86
                          LPTL T   F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR
Sbjct: 67  NLIQVGLTLSDADGNLPTLGTDNCFIWEFNFRDFDVVRDLHAPDSIELLKRQGIDFERNR 126

[Close]

BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 14  EVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 73

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 74  IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 133

[Close]

BLAST of CaUC02G047710 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 65  EVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 124

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 125 IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 184

[Close]

BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 62  EVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 121

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 122 IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 181

[Close]

BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 64  EVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 123

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 124 IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 183

[Close]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 15  SMDTEFPGFLIR-------PSHHYL------------------------LPTL--RTHQT 74
           SMDTEFPG + +       P   Y                         LP L    H+ 
Sbjct: 45  SMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRG 104

Query: 75  FLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERN 77
           F+WEFNFRDFDVA D HAPDSI LL+ QGIDFERN
Sbjct: 105 FIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

[Close]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 5   DFNLIQS-----PPPSMDTEFPG--------FLIRPSHHYL------------------- 64
           +F+LI+      P  SMDTEFPG         L R + +YL                   
Sbjct: 25  EFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLT 84

Query: 65  -------LPTL--RTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 78
                  LP L  + ++ ++WEFNFRDFDV  D HAPDSI LL+  GIDFERNR
Sbjct: 85  LSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNR 138

[Close]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-09
Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIRP--------SHHY----------- 61
           +VW+ NL +            P  +MDTEFPG ++RP         +HY           
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILK 73

Query: 62  -------------LLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRL 79
                         LPT  T +  +W+FNFR+FD+  D+ A DSI LLK  GID  +N L
Sbjct: 74  MIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTL 133

[Close]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-09
Identity = 34/118 (28.81%), Postives = 55/118 (46.61%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIRP----------------------- 61
           +VWD+NL++               +MDTEFPG +++P                       
Sbjct: 14  EVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLK 73

Query: 62  ---------SHHYLLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERN 77
                      +  LPT  T +  +W+FNFR+F++  D++A +SI LL+  GIDF++N
Sbjct: 74  LIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131

[Close]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 35/98 (35.71%), Postives = 47/98 (47.96%), Query Frame = 0


Query: 12  PPPSMDTEFPGFLIRP--------SHHY------------------------LLPTLRTH 71
           P  +MDTEFPG + RP         +HY                         LPT  T 
Sbjct: 35  PFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTD 94

Query: 72  QTF-LWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERN 77
             + +W+FNFR+FD+  D++A DSI LL+  GIDF +N
Sbjct: 95  NKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKN 132

[Close]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 64  EVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 123

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 124 IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 183

[Close]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI-------RPSHHYL----------- 61
           +VWDFNL              P  SMDTEFPG ++       RPS HYL           
Sbjct: 14  EVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNL 73

Query: 62  -------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR-- 89
                        LPTL T + F+WEFNFRDFDV  DLHAPDSI LLK QGIDFERNR  
Sbjct: 74  IQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAH 133

[Close]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A0A0KI60 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_6G425790 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17
Identity = 63/145 (43.45%), Postives = 68/145 (46.90%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLI---------RPSHHYL--------- 61
           +VWD NL+             P  S+DTEFPG LI         RPS HYL         
Sbjct: 7   QVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLHRHPLRPSDHYLLLKSNVDAL 66

Query: 62  ---------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 86
                          LPTL T  +F+WEFNFRDFDVA D HAPDSI LLK QGIDF RNR
Sbjct: 67  NLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARDPHAPDSIELLKQQGIDFHRNR 126

[Close]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A5D3B887 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00210 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15
Identity = 60/145 (41.38%), Postives = 66/145 (45.52%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIR---------PSHHYL--------- 61
           +VWD NL+             P  S+DTEFPG LIR         PS HYL         
Sbjct: 7   QVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLHRHPLHPSDHYLLLKSNVDAL 66

Query: 62  ---------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 86
                          LPTL T  +F+WEFNFRDFDVA   H P SI LLK QGIDF RNR
Sbjct: 67  NLIQLGLTLSDADGNLPTLGTKNSFIWEFNFRDFDVARHPHNPASIELLKQQGIDFHRNR 126

[Close]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A1S3BNU2 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103491668 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15
Identity = 60/145 (41.38%), Postives = 66/145 (45.52%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIR---------PSHHYL--------- 61
           +VWD NL+             P  S+DTEFPG LIR         PS HYL         
Sbjct: 2   QVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLHRHPLHPSDHYLLLKSNVDAL 61

Query: 62  ---------------LPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 86
                          LPTL T  +F+WEFNFRDFDVA   H P SI LLK QGIDF RNR
Sbjct: 62  NLIQLGLTLSDADGNLPTLGTKNSFIWEFNFRDFDVARHPHNPASIELLKQQGIDFHRNR 121

[Close]

BLAST of CaUC02G047710 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-13
Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 15  SMDTEFPGFLIR-------PSHHYL------------------------LPTL--RTHQT 74
           SMDTEFPG + +       P   Y                         LP L    H+ 
Sbjct: 45  SMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRG 104

Query: 75  FLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERN 77
           F+WEFNFRDFDVA D HAPDSI LL+ QGIDFERN
Sbjct: 105 FIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

[Close]

BLAST of CaUC02G047710 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 5   DFNLIQS-----PPPSMDTEFPG--------FLIRPSHHYL------------------- 64
           +F+LI+      P  SMDTEFPG         L R + +YL                   
Sbjct: 25  EFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLT 84

Query: 65  -------LPTL--RTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNR 78
                  LP L  + ++ ++WEFNFRDFDV  D HAPDSI LL+  GIDFERNR
Sbjct: 85  LSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNR 138

[Close]

BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIRP--------SHHY----------- 61
           +VW+ NL +            P  +MDTEFPG ++RP         +HY           
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILK 73

Query: 62  -------------LLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRL 79
                         LPT  T +  +W+FNFR+FD+  D+ A DSI LLK  GID  +N L
Sbjct: 74  MIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTL 133

[Close]

BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIRP--------SHHY----------- 61
           +VW+ NL +            P  +MDTEFPG ++RP         +HY           
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILK 73

Query: 62  -------------LLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRL 79
                         LPT  T +  +W+FNFR+FD+  D+ A DSI LLK  GID  +N L
Sbjct: 74  MIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTL 133

[Close]

BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 2   KVWDFNLIQS-----------PPPSMDTEFPGFLIRP--------SHHY----------- 61
           +VW+ NL +            P  +MDTEFPG ++RP         +HY           
Sbjct: 14  EVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILK 73

Query: 62  -------------LLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRL 79
                         LPT  T +  +W+FNFR+FD+  D+ A DSI LLK  GID  +N L
Sbjct: 74  MIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTL 133

The following BLAST results are available for this feature:

BLAST of CaUC02G047710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901771.1	2.9e-17	44.14	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
XP_022957732.1	3.8e-17	44.29	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 ...	[more]
KAG7035921.1	3.8e-17	44.29	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_023534188.1	3.8e-17	44.29	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022995114.1	3.8e-17	44.29	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]

BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXM2	3.8e-12	45.26	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9FMS6	7.2e-11	40.35	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SAI2	1.3e-09	33.33	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	6.7e-09	28.81	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SKZ2	2.5e-08	35.71	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of CaUC02G047710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4S7	1.8e-17	44.29	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 S...	[more]
A0A6J1GZY2	1.8e-17	44.29	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3...	[more]
A0A0A0KI60	3.1e-17	43.45	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_6G425790 PE=3 SV...	[more]
A0A5D3B887	5.0e-15	41.38	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BNU2	5.0e-15	41.38	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103491668 PE=3 SV=1	[more]

BLAST of CaUC02G047710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44260.1	2.7e-13	45.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G22250.1	5.1e-12	40.35	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	9.6e-11	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	9.6e-11	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	9.6e-11	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 33..79 e-value: 1.4E-7 score: 32.7
None	No IPR available	PANTHER	PTHR10797:SF10	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 33..80
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 33..80
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G047710.1	CaUC02G047710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity