CaUC02G042690 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G042690
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein
LocationCiama_Chr02: 30232168 .. 30232701 (-)
RNA-Seq ExpressionCaUC02G042690
SyntenyCaUC02G042690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGACGGCATCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGATGATGATGACGACACTCCTATTCTGTTTGCCAGGAATTGAATTCGATCCTTCCTTCTTCTTCTTTTTCTTTAATGTTTCCGACAATTTTCCAGCCCTAGGTGTTGAATAATTGTGAACCAGATGAGATGATTTATTACTGTGATTTTTATTTTTATTTTTATTTTTTTGAGTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

mRNA sequence

ATGGCCGCCGACGGCATCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGATGATGATGACGACACTCCTATTCTTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

Coding sequence (CDS)

ATGGCCGCCGACGGCATCCTCCGCCCTGTTTACGAGGCCTGCATCGCCGGCTGCGACTCCGAAATCCACCGCCGCCCCTACCACCGCAACTGCGGTTGCGCTCTCCACAAATCCCGCCGTCAACCTCCTCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATCCGTCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTTGCCTCTGCTTCCTCTTCTCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAACCTGGTGCGGCTTTGAGCGACGATGATGATGACGACACTCCTATTCTTTTCTGTGATCTGAAAAACAATATTGGATCCGTTCTTGTTTCTGAGTCATGTTACTTTCATCTTGCCATCAAATAG

Protein sequence

MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRSWSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILFCDLKNNIGSVLVSESCYFHLAIK
Homology
BLAST of CaUC02G042690 vs. NCBI nr
Match: XP_038889376.1 (uncharacterized protein LOC120079294 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF
Sbjct: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 105

BLAST of CaUC02G042690 vs. NCBI nr
Match: XP_016901708.1 (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 9.2e-49
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+L LASASSSPS+SPVVGKTSQPGAALS+DDDDD PILF
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILF 105

BLAST of CaUC02G042690 vs. NCBI nr
Match: XP_022938303.1 (uncharacterized protein LOC111444438 [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 6.1e-45
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ  HC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCLTL  AS SSSPSSSPVVGK+SQPGAALSDDDDDD P+ F
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQF 105

BLAST of CaUC02G042690 vs. NCBI nr
Match: KAG7021199.1 (hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ  HC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCLTL  AS SSSPSSSPVVGK SQPGAALSDDDDDD P+ F
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQF 105

BLAST of CaUC02G042690 vs. NCBI nr
Match: XP_022999015.1 (uncharacterized protein LOC111493529 [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-44
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ P CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPI 104
           WSEGCL L LASASSSPSSSPVVGKTSQPG ALSDDDDDD P+
Sbjct: 61  WSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDAPL 103

BLAST of CaUC02G042690 vs. ExPASy TrEMBL
Match: A0A1S4E0F4 (uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.4e-49
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+L LASASSSPS+SPVVGKTSQPGAALS+DDDDD PILF
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILF 105

BLAST of CaUC02G042690 vs. ExPASy TrEMBL
Match: A0A0A0LI78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRP+YEACI GCDSEIHRRPYHRNCGCALHKS RQPPHCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCL+LVLASASSSPSSSPVVGKTSQPGA LS+DDDDD+PILF
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILF 104

BLAST of CaUC02G042690 vs. ExPASy TrEMBL
Match: A0A6J1FII0 (uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC111444438 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ  HC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 106
           WSEGCLTL  AS SSSPSSSPVVGK+SQPGAALSDDDDDD P+ F
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQF 105

BLAST of CaUC02G042690 vs. ExPASy TrEMBL
Match: A0A6J1KE46 (uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.7e-45
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ P CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPI 104
           WSEGCL L LASASSSPSSSPVVGKTSQPG ALSDDDDDD P+
Sbjct: 61  WSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDAPL 103

BLAST of CaUC02G042690 vs. ExPASy TrEMBL
Match: A0A6J1G546 (uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC111450804 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.2e-43
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSVSYPIRRS 60
           MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ P CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDD 100
           WSEGCL L LASASSSPSSSPV+GKTSQPG ALSDDDDD
Sbjct: 61  WSEGCLALALASASSSPSSSPVIGKTSQPGVALSDDDDD 99

BLAST of CaUC02G042690 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 1   MAADGILRPVYEACIAGCDSEIHRRPYHRNCGCALH---------KSRRQPPHC-SHSKS 60
           MAADGI R ++E CI+G DS I RRPYH+NCGCALH         +++R+PP C  H  S
Sbjct: 1   MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61  KSVSYPIRRSWSEG-CLTLVLASASSSPSSSPVVGKTSQPGAALSD 96
           +S+S+PIRRSWSEG  + + L S+SSS S+   +  +S      SD
Sbjct: 61  ESISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSLSNLASD 106

BLAST of CaUC02G042690 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 4   DGILRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRR---QPPHCSHSKSKSVSYPIRRS 63
           DGI R ++E CI+ CDS I RRPYH+NCGCALH+  R       C H +S+ V +PI+RS
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64  WSEG-CLTLVLASASSSP-----SSSPVVGKTSQPGAALSDDD 98
           WSEG  L L LAS+SSS      SSS  +   +   + +SD D
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889376.15.2e-5298.10uncharacterized protein LOC120079294 [Benincasa hispida][more]
XP_016901708.19.2e-4992.38PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo][more]
XP_022938303.16.1e-4587.62uncharacterized protein LOC111444438 [Cucurbita moschata][more]
KAG7021199.11.4e-4487.62hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022999015.11.8e-4488.35uncharacterized protein LOC111493529 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E0F44.4e-4992.38uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=... [more]
A0A0A0LI781.1e-4791.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1[more]
A0A6J1FII03.0e-4587.62uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1KE468.7e-4588.35uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529... [more]
A0A6J1G5466.2e-4388.89uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC1114508... [more]
Match NameE-valueIdentityDescription
AT2G46490.11.2e-1949.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G35110.11.5e-1748.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..98
NoneNo IPR availablePANTHERPTHR35121:SF2BNAC04G52100D PROTEINcoord: 2..86
NoneNo IPR availablePANTHERPTHR35121HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATEDcoord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G042690.1CaUC02G042690.1mRNA