CaUC02G042370 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G042370
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	VQ domain-containing protein
Location	Ciama_Chr02: 29817201 .. 29817590 (+)
RNA-Seq Expression	CaUC02G042370
Synteny	CaUC02G042370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGTGCGGAGAGAATCGATACAACAACCAAAACCAAAGCCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGATGCCCTGGCTCACCGGAGAAACCACAAATCGCCTTCCGATGGCACCCCAACTCCATCTTCAACGTTTTATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCAGATGGCATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAACATTATGGGATTTCAATCTTCTTGTTTTTTTCAATAG

mRNA sequence

ATGGGAAAGTGCGGAGAGAATCGATACAACAACCAAAACCAAAGCCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGATGCCCTGGCTCACCGGAGAAACCACAAATCGCCTTCCGATGGCACCCCAACTCCATCTTCAACGTTTTATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCAGATGGCATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAACATTATGGGATTTCAATCTTCTTGTTTTTTTCAATAG

Coding sequence (CDS)

ATGGGAAAGTGCGGAGAGAATCGATACAACAACCAAAACCAAAGCCAAAACCCTACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGATGCCCTGGCTCACCGGAGAAACCACAAATCGCCTTCCGATGGCACCCCAACTCCATCTTCAACGTTTTATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCAGATGGCATGGCGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAACATTATGGGATTTCAATCTTCTTGTTTTTTTCAATAG

Protein sequence

MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSDGTPTPSSTFYADHEMEVLKFSDGMASLLQFDDQGCFATHNNNILPNNIMGFQSSCFFQ

Homology

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BLAST of CaUC02G042370 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-44
Identity = 105/139 (75.54%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN+Y N      Q+Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSDALAHRRNHKSPSDGTPTPSSTFYAD-HEMEVLKFSDG--MASLLQFDDQGCFAT-H 120
           FDS+    RRN K  SD   TPS+ F+AD HEMEVLKFSD   M SLLQFD QGCF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMGFQSSCFFQ 130
           NNNILPNNIM FQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

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BLAST of CaUC02G042370 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 8.7e-39
Identity = 89/130 (68.46%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDAL 60
           MGKCGEN + +Q QSQNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTGF S + 
Sbjct: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60

Query: 61  AHRRNHKSPSDGTPTPS-STFYADHEMEVLKFSDGMASLLQFDDQGCFATHNNNILPNNI 120
             R NHK P     TPS ST +A+ +ME LK SD M+SLL+FDD+ CF T  +N+L NN 
Sbjct: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVT-LDNVLTNNF 120

Query: 121 MGFQSSCFFQ 130
           MGFQ+SC FQ
Sbjct: 121 MGFQASCLFQ 129

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BLAST of CaUC02G042370 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-18
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 35  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSDGTPTPSSTFYADHEMEVLKFSD 94
           MMIKAS+ALEFRAIVQQLTGFDS++    RRN KS SD   TPSS F+AD EMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 95  G-MASLLQFDDQGC 107
             MASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of CaUC02G042370 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 1   MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD-- 60
           MGK  ++R    ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD  
Sbjct: 20  MGKLRDHRC---HKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG 79

Query: 61  -------ALAHRRNHKSPSDGTPTPSSTFYADHEMEVLKFSDGMASLLQFDDQGCFATHN 120
                   L    N         +P +    D +  +  F D M+S L+FD+   +    
Sbjct: 80  EPSNVPTTLPEEANQVHSPFHVDSPPAK--VDDKSLLDTFQDDMSS-LEFDEGFLW---- 139

Query: 121 NNILPNNIMGFQSSCFF 129
              +P N+ GFQS   F
Sbjct: 140 -RAVPENLFGFQSPFIF 145

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BLAST of CaUC02G042370 vs. NCBI nr
Match: XP_039063993.1 (uncharacterized protein LOC120208953 [Hibiscus syriacus])

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-08
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 5   GENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRR 64
           G+ R    +++Q PTK ++ PIK++YISSP+M+KA N  EFRA+VQQLTG +SD   HR 
Sbjct: 2   GKLRDPGCDKTQKPTKPKKNPIKIRYISSPVMVKACNEAEFRAVVQQLTGQNSDIREHRS 61

Query: 65  NHKSPSDGTPTPSSTFYADHEMEV---LKFSDGMASLLQFDDQGCFATHNNNILPNNIMG 124
             +  +     P+  F AD   ++     F   M+SL  FD+   +       +  N++G
Sbjct: 62  ITEEANQVRDIPN--FQADSLAKIDDTNTFPYDMSSLELFDESFVWRG-----VAENLVG 121

Query: 125 FQSSCFF 129
           FQS   F
Sbjct: 122 FQSPSIF 121

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BLAST of CaUC02G042370 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 105/139 (75.54%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGKCGENRYNN------QNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN+Y N      Q+Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSDALAHRRNHKSPSDGTPTPSSTFYAD-HEMEVLKFSDG--MASLLQFDDQGCFAT-H 120
           FDS+    RRN K  SD   TPS+ F+AD HEMEVLKFSD   M SLLQFD QGCF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMGFQSSCFFQ 130
           NNNILPNNIM FQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CaUC02G042370 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 35  MMIKASNALEFRAIVQQLTGFDSDAL-AHRRNHKSPSDGTPTPSSTFYADHEMEVLKFSD 94
           MMIKAS+ALEFRAIVQQLTGFDS++    RRN KS SD   TPSS F+AD EMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 95  G-MASLLQFDDQGC 107
             MASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of CaUC02G042370 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 1   MGKCGENRYNNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSD-- 60
           MGK  ++R    ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD  
Sbjct: 20  MGKLRDHRC---HKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG 79

Query: 61  -------ALAHRRNHKSPSDGTPTPSSTFYADHEMEVLKFSDGMASLLQFDDQGCFATHN 120
                   L    N         +P +    D +  +  F D M+S L+FD+   +    
Sbjct: 80  EPSNVPTTLPEEANQVHSPFHVDSPPAK--VDDKSLLDTFQDDMSS-LEFDEGFLW---- 139

Query: 121 NNILPNNIMGFQSSCFF 129
              +P N+ GFQS   F
Sbjct: 140 -RAVPENLFGFQSPFIF 145

[Close]

BLAST of CaUC02G042370 vs. ExPASy TrEMBL
Match: A0A1R3HNT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 14  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRNHKSPSDGT 73
           +S+NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +SD    R  H +    T
Sbjct: 16  KSKNPTKVKKNPIKVTYIDSPTMVKVSNADEFRAIVQELTGRNSDT---REQHSNDVHTT 75

Query: 74  PTP--------SSTFYADHEMEVLKFSDGMASLLQFDDQGCFATHNNNILPNNIMGFQSS 126
             P         S+   D  + +  F   M+S L+FD+   +       +  +++GFQSS
Sbjct: 76  TIPKEEANQVHDSSAKVDDRILLDSFPVDMSS-LEFDEDFTWRG-----VQEDLLGFQSS 126

[Close]

BLAST of CaUC02G042370 vs. ExPASy TrEMBL
Match: A0A6A1UKY6 (VQ domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006185 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 7   NRY-NNQNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDALAHRRN 66
           N Y ++++Q+QNPTK +++P+K+KYISSP  ++ASN +EFRAIVQ+LTG +S+       
Sbjct: 9   NHYLHHRDQTQNPTKAKQEPVKIKYISSPTFVRASNPIEFRAIVQELTGQNSE------- 68

Query: 67  HKSPSDGTPTPSSTFYADH-----EMEVLKFSDGMASLLQF 102
                D T + S T   +H     EM       G++S ++F
Sbjct: 69  -----DRTSSDSYTMITNHGNLHKEMGTENADGGLSSTMRF 97

The following BLAST results are available for this feature:

BLAST of CaUC02G042370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	6.8e-44	75.54	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	8.7e-39	68.46	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	3.8e-18	77.03	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	2.9e-10	40.15	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
XP_039063993.1	1.6e-08	37.80	uncharacterized protein LOC120208953 [Hibiscus syriacus]	[more]

BLAST of CaUC02G042370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G042370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	3.3e-44	75.54	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	1.8e-18	77.03	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	1.4e-10	40.15	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A1R3HNT0	2.9e-08	40.00	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 P...	[more]
A0A6A1UKY6	6.5e-08	39.60	VQ domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR0G006185 PE=4...	[more]

BLAST of CaUC02G042370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 31..58 e-value: 5.8E-9 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 10..126
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 10..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G042370.1	CaUC02G042370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity