CaUC02G041250 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G041250
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionmicrotubule-binding protein TANGLED
LocationCiama_Chr02: 28548826 .. 28549506 (+)
RNA-Seq ExpressionCaUC02G041250
SyntenyCaUC02G041250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTAAAACCCCACCAAAACAAAAGAAAATGGTAGCAGCAGCAGCAGCCACTCTCAACCCAGTTCAAGTTAGAGAAACACTAAAGAAGGTAACAAGAAAGTTCATGGTTTAATTTCCCATTTGTTGTGATTTAAGCTTTTGGAGAGGATTTGCTGCTTTTATCTGCCTCTTTCTTCACCTTCAGCTTAATTTTTCAGCTCATTGAAAATCTTACATTGTTATTTATTTTGGCTCTCTTCTTTTTTTTTTTTTTTTCTTTGGTGAAACAGTTTTAGAAAGCCATGATGAGAAAAAAGTTTCTATCTTTCATTTCAATGTCTATGTTTCATTTCTCTAATCTGGGTTCTTCATTTTCAGTACATTTTCTTTGCTCAAAGGTTGAAAATTTAAATTCTTCTTCACTTTCTTGGGAAACAAACACTCTACAATCTTTTGGTTTCCCCAGCTCAATGTTCAGCTTCAATATTTTCTTAATCCACGAACTTTTTTGGCTTCTTTTTCATACATAAATTGCAGGTCTCATTTGGGATCTTCATCCTCAGTTTAACTTTTCAGCTCAAATGATGTAAAAACATATATATACATTCTTGTTCATCTCCTCAGGAAACAAAGAGCCCCCACTGAACTTCAGCTAGAACTTGACACAAATGGATGGAAAAATTCATCTTGTTCTTAG

mRNA sequence

ATGGTTGCTAAAACCCCACCAAAACAAAAGAAAATGGTAGCAGCAGCAGCAGCCACTCTCAACCCAGTTCAAGTTAGAGAAACACTAAAGAAGCTCAATGTTCAGCTTCAATATTTTCTTAATCCACGAACTTTTTTGGCTTCTTTTTCATACATAAATTGCAGGAAACAAAGAGCCCCCACTGAACTTCAGCTAGAACTTGACACAAATGGATGGAAAAATTCATCTTGTTCTTAG

Coding sequence (CDS)

ATGGTTGCTAAAACCCCACCAAAACAAAAGAAAATGGTAGCAGCAGCAGCAGCCACTCTCAACCCAGTTCAAGTTAGAGAAACACTAAAGAAGCTCAATGTTCAGCTTCAATATTTTCTTAATCCACGAACTTTTTTGGCTTCTTTTTCATACATAAATTGCAGGAAACAAAGAGCCCCCACTGAACTTCAGCTAGAACTTGACACAAATGGATGGAAAAATTCATCTTGTTCTTAG

Protein sequence

MVAKTPPKQKKMVAAAAATLNPVQVRETLKKLNVQLQYFLNPRTFLASFSYINCRKQRAPTELQLELDTNGWKNSSCS
Homology
[Close]
BLAST of CaUC02G041250 vs. NCBI nr
Match: XP_023547292.1 (microtubule-binding protein TANGLED [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV-AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVAAAAAATLNPVQVRETLKKVEM 35

[Close]
BLAST of CaUC02G041250 vs. NCBI nr
Match: KAG6599245.1 (Microtubule-binding protein TANGLED, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVAAAAAAATLNPVQVRETLKKVEM 36

[Close]
BLAST of CaUC02G041250 vs. NCBI nr
Match: XP_022946572.1 (microtubule-binding protein TANGLED [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVAAAAAAATLNPVQVRETLKKVEM 36

[Close]
BLAST of CaUC02G041250 vs. NCBI nr
Match: XP_011648821.1 (microtubule-binding protein TANGLED [Cucumis sativus] >KAE8651599.1 hypothetical protein Csa_023440 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV   AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVASAAAAAATLNPVQVRETLKKVEM 37

[Close]
BLAST of CaUC02G041250 vs. NCBI nr
Match: KAG7030245.1 (Microtubule-binding protein TANGLED [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-04
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV----AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV    AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVAAAAAAAAATLNPVQVRETLKKVEM 38

[Close]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match: A0A6J1G429 (microtubule-binding protein TANGLED OS=Cucurbita moschata OX=3662 GN=LOC111450593 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV--AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV  AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVAAAAAAATLNPVQVRETLKKVEM 36

[Close]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match: A0A0A0LFS2 (Microtubule binding protein OS=Cucumis sativus OX=3659 GN=Csa_2G022250 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV---AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV   AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVASAAAAAATLNPVQVRETLKKVEM 37

[Close]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match: A0A6J1KAM7 (microtubule-binding protein TANGLED OS=Cucurbita maxima OX=3661 GN=LOC111493748 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMVAAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV AAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMV-AAAATLNPVQVRETLKKVEM 33

[Close]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match: A0A5D3D444 (Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00190 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV     AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVASAAAAAAAATLNPVQVRETLKKVEM 39

[Close]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match: A6YTD5 (Microtubule binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MVAKTPPKQKKMV-----AAAAATLNPVQVRETLKKLNV 35
          MVAKTPPKQKKMV     AAAAATLNPVQVRETLKK+ +
Sbjct: 1  MVAKTPPKQKKMVASAAAAAAAATLNPVQVRETLKKVEM 39

The following BLAST results are available for this feature:
BLAST of CaUC02G041250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023547292.14.2e-0488.57microtubule-binding protein TANGLED [Cucurbita pepo subsp. pepo][more]
KAG6599245.15.5e-0486.11Microtubule-binding protein TANGLED, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022946572.15.5e-0486.11microtubule-binding protein TANGLED [Cucurbita moschata][more]
XP_011648821.17.1e-0483.78microtubule-binding protein TANGLED [Cucumis sativus] >KAE8651599.1 hypothetical... [more]
KAG7030245.19.3e-0481.58Microtubule-binding protein TANGLED [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CaUC02G041250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G4292.6e-0486.11microtubule-binding protein TANGLED OS=Cucurbita moschata OX=3662 GN=LOC11145059... [more]
A0A0A0LFS23.5e-0483.78Microtubule binding protein OS=Cucumis sativus OX=3659 GN=Csa_2G022250 PE=4 SV=1[more]
A0A6J1KAM75.9e-0488.24microtubule-binding protein TANGLED OS=Cucurbita maxima OX=3661 GN=LOC111493748 ... [more]
A0A5D3D4445.9e-0479.49Microtubule-binding protein TANGLED OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A6YTD55.9e-0479.49Microtubule binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of CaUC02G041250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G041250.1CaUC02G041250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000694 regulation of phragmoplast microtubule organization
molecular_function GO:0008017 microtubule binding