CaUC02G039970 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G039970
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransducin/WD-like repeat-protein
LocationCiama_Chr02: 27175769 .. 27176818 (+)
RNA-Seq ExpressionCaUC02G039970
SyntenyCaUC02G039970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCTCCATTGGTTTGCCCTATTATTTCGGTGCAAGCCTCGATTTGATCTTCTCAACCTCCTTAGTCCCAATCTGAAACGCCTTCGTCAACACATTATCAGGAACCGGCGGAGATGCGGCGAAAAGCGCCGCCGCAATCGATTGAGTACCAGGCAACTGGCTATTAAACGCCGCAATCACCGCCGCCGGAACCTTTCCGTTGTTTTTCTGGAAGTGAACCAATCCCTTCGGGAAAACGAAGATCTCACCCTTCTTGATCGATTTCGAGACAAGAACATTGGCGGTTGTAATGAAGCCGACGTCTAGTTGGCCTTCGAGGACGAACACGATCTCGGTTGCGCGTGGATGCGTGTGCGGCGGATTCAGCCCGCCGGGAGCATAGTCGATTCGCGAGAGGGAGACGCCGAGTGTGTTCAGGCCGGGGATTGATTGGACATTGGCTCCAGTTACTCGCGAGCCTAGGGTATTGTTGGTGAGCCCTGGTTTGGCCAATCCATCGAAGAAGAAATCGTTTGCTGAGAAATTCGATTTGCAGGTGAATCCGTTTACTTTGATTCCTGTTTTGATTCAAATGTTAGTATCTGCAAAATATAAACTGTTTGGGAATGCTGGTTATGATTAGAGCCTATGATGTTGTCTAGTTTGAGCTTAAACATGGATTAGAACAGAGGAAATTCTTTGAATCAATCTGAATTCCATCTCTAAAGAGGTCAATGTCTTGATCTTTTTCTTGTTAGTTCTTCCTTCTAGGCATTGTGAGCCTGTTTAGACAACATCTCTATTGATACGAGACATTTCGAATTCAAAACTCAATTCTAACTCAACAAGATGGAGACATTTTACATGAAAACAAGATCAAATCTTCCACTCAGGCTTCTGTCCAAAATAGAGATGGTGAAGGGTCTTGTTGGAACAAAAACCCTATACCCTTTACTCAACTATGAACAAATGAAAACCCACAAGGCCATAACCCTAAACTTAGAAACCAATGATTATGCAACCTTGTTAGAGAATTGGGGGAATATAGAAATAGAGAAAGAGAGGTTAGCT

mRNA sequence

AACCTCCATTGGTTTGCCCTATTATTTCGGTGCAAGCCTCGATTTGATCTTCTCAACCTCCTTAGTCCCAATCTGAAACGCCTTCGTCAACACATTATCAGGAACCGGCGGAGATGCGGCGAAAAGCGCCGCCGCAATCGATTGAGTACCAGGCAACTGGCTATTAAACGCCGCAATCACCGCCGCCGGAACCTTTCCGTTGTTTTTCTGGAAGTGAACCAATCCCTTCGGGAAAACGAAGATCTCACCCTTCTTGATCGATTTCGAGACAAGAACATTGGCGGTTGTAATGAAGCCGACTTGGCCTTCGAGGACGAACACGATCTCGGTTGCGCGTGGATGCGTGTGCGGCGGATTCAGCCCGCCGGGAGCATAGTCGATTCGCGAGAGGGAGACGCCGAGCCGGGGATTGATTGGACATTGGCTCCAGTTACTCGCGAGCCTAGGGTATTGTTGGTGAGCCCTGGTTTGGCCAATCCATCGAAGAAGAAATCGTTTGCTGAGAAATTCGATTTGCAGGTGAATCCGTTTACTTTGATTCCTGTTTTGATTCAAATGCTTCTGTCCAAAATAGAGATGGTGAAGGGTCTTGTTGGAACAAAAACCCTATACCCTTTACTCAACTATGAACAAATGAAAACCCACAAGGCCATAACCCTAAACTTAGAAACCAATGATTATGCAACCTTGTTAGAGAATTGGGGGAATATAGAAATAGAGAAAGAGAGGTTAGCT

Coding sequence (CDS)

AACCTCCATTGGTTTGCCCTATTATTTCGGTGCAAGCCTCGATTTGATCTTCTCAACCTCCTTAGTCCCAATCTGAAACGCCTTCGTCAACACATTATCAGGAACCGGCGGAGATGCGGCGAAAAGCGCCGCCGCAATCGATTGAGTACCAGGCAACTGGCTATTAAACGCCGCAATCACCGCCGCCGGAACCTTTCCGTTGTTTTTCTGGAAGTGAACCAATCCCTTCGGGAAAACGAAGATCTCACCCTTCTTGATCGATTTCGAGACAAGAACATTGGCGGTTGTAATGAAGCCGACTTGGCCTTCGAGGACGAACACGATCTCGGTTGCGCGTGGATGCGTGTGCGGCGGATTCAGCCCGCCGGGAGCATAGTCGATTCGCGAGAGGGAGACGCCGAGCCGGGGATTGATTGGACATTGGCTCCAGTTACTCGCGAGCCTAGGGTATTGTTGGTGAGCCCTGGTTTGGCCAATCCATCGAAGAAGAAATCGTTTGCTGAGAAATTCGATTTGCAGGTGAATCCGTTTACTTTGATTCCTGTTTTGATTCAAATGCTTCTGTCCAAAATAGAGATGGTGAAGGGTCTTGTTGGAACAAAAACCCTATACCCTTTACTCAACTATGAACAAATGAAAACCCACAAGGCCATAACCCTAAACTTAGAAACCAATGATTATGCAACCTTGTTAGAGAATTGGGGGAATATAGAAATAGAGAAAGAGAGGTTAGCT

Protein sequence

NLHWFALLFRCKPRFDLLNLLSPNLKRLRQHIIRNRRRCGEKRRRNRLSTRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADLAFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFAEKFDLQVNPFTLIPVLIQMLLSKIEMVKGLVGTKTLYPLLNYEQMKTHKAITLNLETNDYATLLENWGNIEIEKERLA
Homology
[Close]
BLAST of CaUC02G039970 vs. NCBI nr
Match: KAG6418092.1 (hypothetical protein SASPL_120291 [Salvia splendens])

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-06
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 78  ENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE 135
           ENED+  LD   D+++GG +EAD+  AFE +HDLG AW+ V R++ A  +VD+ +GDAE
Sbjct: 10  ENEDVPFLDGLGDEDVGGGDEADVEFAFEHQHDLGGAWVLVGRVEAARGVVDAGQGDAE 68

[Close]
BLAST of CaUC02G039970 vs. NCBI nr
Match: RWV81621.1 (hypothetical protein GW17_00056938, partial [Ensete ventricosum])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-05
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 68  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSI 127
           V LEV+Q+  E+ED+ L D   D+ +GG +EA +  A E E DLG A + VRR+QPAG +
Sbjct: 1   VLLEVDQAAGEDEDVALGDGLGDQLVGGGDEAHVEGAVEHEDDLGGAGVGVRRVQPAGGV 60

Query: 128 VDSREGDAE 135
           VD+  G A+
Sbjct: 61  VDAGHGHAQ 69

[Close]
BLAST of CaUC02G039970 vs. NCBI nr
Match: RWR75980.1 (LOW QUALITY PROTEIN: transducin/WD-like repeat-protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-05
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 40  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI-- 99
           G  R + R+S    T  L  K RN   R ++ + LEVN++  E++ ++L++    + I  
Sbjct: 98  GRLRSKYRISNGDHTWVLTAKSRNGYSRGVANISLEVNEAYWEDKHISLVEDLAYQGIIV 157

Query: 100 -GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSREGDAEPGIDWTLAPVTREPR 159
             G ++AD  L F+D   L   W+ VRR+ P  G           PGI +T A VT  P 
Sbjct: 158 LVGEDKADVELPFKDRQYLCGTWVCVRRVLPIRGKRTKEIPRVLSPGIWFTRALVTLNPT 217

Query: 160 VLLVSPGLANPSKKKSFA--EKFDLQVNPFT 179
           + +V  GL+ P KKKSFA      LQ+NPFT
Sbjct: 218 LFMVLLGLSKPDKKKSFAVTSSTALQMNPFT 248

[Close]
BLAST of CaUC02G039970 vs. ExPASy TrEMBL
Match: A0A444C6X6 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00056938 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 68  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSI 127
           V LEV+Q+  E+ED+ L D   D+ +GG +EA +  A E E DLG A + VRR+QPAG +
Sbjct: 1   VLLEVDQAAGEDEDVALGDGLGDQLVGGGDEAHVEGAVEHEDDLGGAGVGVRRVQPAGGV 60

Query: 128 VDSREGDAE 135
           VD+  G A+
Sbjct: 61  VDAGHGHAQ 69

[Close]
BLAST of CaUC02G039970 vs. ExPASy TrEMBL
Match: A0A3S3M2P0 (Transducin/WD-like repeat-protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00438800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 40  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI-- 99
           G  R + R+S    T  L  K RN   R ++ + LEVN++  E++ ++L++    + I  
Sbjct: 98  GRLRSKYRISNGDHTWVLTAKSRNGYSRGVANISLEVNEAYWEDKHISLVEDLAYQGIIV 157

Query: 100 -GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSREGDAEPGIDWTLAPVTREPR 159
             G ++AD  L F+D   L   W+ VRR+ P  G           PGI +T A VT  P 
Sbjct: 158 LVGEDKADVELPFKDRQYLCGTWVCVRRVLPIRGKRTKEIPRVLSPGIWFTRALVTLNPT 217

Query: 160 VLLVSPGLANPSKKKSFA--EKFDLQVNPFT 179
           + +V  GL+ P KKKSFA      LQ+NPFT
Sbjct: 218 LFMVLLGLSKPDKKKSFAVTSSTALQMNPFT 248

The following BLAST results are available for this feature:
BLAST of CaUC02G039970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6418092.11.7e-0650.85hypothetical protein SASPL_120291 [Salvia splendens][more]
RWV81621.12.4e-0547.83hypothetical protein GW17_00056938, partial [Ensete ventricosum][more]
RWR75980.13.1e-0535.76LOW QUALITY PROTEIN: transducin/WD-like repeat-protein [Cinnamomum micranthum f.... [more]
BLAST of CaUC02G039970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G039970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A444C6X61.2e-0547.83Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0005693... [more]
A0A3S3M2P01.5e-0535.76Transducin/WD-like repeat-protein OS=Cinnamomum micranthum f. kanehirae OX=33745... [more]
BLAST of CaUC02G039970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G039970.1CaUC02G039970.1mRNA