CaUC02G038850 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G038850
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	60S ribosomal protein L35-like
Location	Ciama_Chr02: 25647437 .. 25650286 (+)
RNA-Seq Expression	CaUC02G038850
Synteny	CaUC02G038850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGAGTGAACAATCGTCCTGCAGTTTAGAAGCATTAGTTCTACTTTGATATTATTTAGAATTAAAATAATAATAATAATAATAAAAAGGGTAAACAAATTACATATCTTCGAACAATTATGACTCTGACATTGCAAGAGCAGGAAAATAGCATTTCAAATACATAGGATCCATCAATTATGCGACAACTACCCTAAGGTTCTATTTATGACCTAGGGCAAAATTACTTTAATTAAAATAAAATTTAATATCAAATATTAAAATAACAATAATTTTATGTAATTGAATAATATTCCATTATCAAATTCTCTATTTTAATATCTTATATTAAAATAAATATATTAAATTATTTAAATCAAATTCAAACCTTTTAATTCTCCTAATACATATTTACTCATTTTATGAAATGTTAATTTCTTCAATTAACATATTTATAAAAAGATATTAAATATTTCACAGTTTAATCTTTTACAAACTTTTTGTATAAATATCCCTGCTCACATATCTCCACATGAACGATTTGGACAAATCACTTGTAATAATTACAAAGTTGGTTGAATATGTAAATGTCACAAGGATAAACCACCCAACTTTTTCCATATACTATAGACTCTTTAGGTTATTTCTTAAACATGATCCACTCGTATGTCAACCACATACTGTTTATGATAATATCTAATAAAATTGAATAATATAATATTGCATATAAAATAATTAAATTAAATCATTATTAAATAACAAATTAATTATGATGCTTTTTGTATATAAATCCCAACACAAAACATAGAATTCAGGGATGAAAGTGGTGGGTAGCTATAGGCTTTATTTTGAATTCATTTGGTAATTGTTTTGGATTTTGATTTGGGAAACTTGTGCTTGTTTTTTTCCCCAAATTTTTAGTGGGCCGAAAATTTAAAGCCCATTCCATATCAAATGCTCTTTAGTGGGCCCATCGGTAAAAGCCCAATCCAAATCGGGAAACAGCCCATCGAATTGAAAATGAAGGAAATTACGGGCGTCTTAAATAGGTTTGGATCTTCTTCAGTTGCTTCAACCTAGGGTTTTGCTAGTTGCAGACCTCCGCCGAATCCCAAATCACAACAGACGGTCTCTGCTTACCAGATTTTAATGGGTAAAATCTCACGAACTTCGCTTAACTGAAGCTTTCTCTTCATAATTTCTCCGTCGTTGAGCAACATTGATCGCTTCATGATTGATTTTGTCTTAGTTTTCTTTCTCTCTTCTGCTTTAAAATTTATATGGTCGGTTTTCTTGATTGAGTGCAGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATGTACATTCGTTTATCTTTCTATTGATTCTCTTCTTCTTTGTATGTTTTCGTATGTATGTTGATTGTTGTTCTTTTGGGTTTTTGCTGTGATGTTTATTGGGTTTGTTTTGGTGGTTCTTCACTGCAGTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGTAAGAGCTTTCTTCATTTGAAATTGCATATTAGTATATATTCCTTTCCCTTTTGTTGTATTTGTCTGTTTGCTTAAATTTCTGCTATGTATTTGATTCATTATCAATGTATTTGTGCACGTTTCTGAATAATCTATGAATTTGCTTTCCCCGTTGAATGGTTAAGGATTCTACTGTGTGGTATAATTTTATTGTTAATATTGTATTTCCCGTTGAAGCTTCGTTTAGTATTTGGTCATTTTTGCCATTTATTGGGCTCTTCGTTTCCTGAGATTGTTGAGCCACTGCATTTTAGAAGTTAAAGGAGACTTCTTTTTATTAGAAAGAAAAAACAGTATCAAACGGAATGATTCTCCAAGTATTGGAAGCCTTCTACATAGTTTCAATGTCTTAATGCTGTGAACAAAATTCTGTTTCATGCCTTATCTAGAATGTGCATATAACATATCTGAGATCATATCTCAGTTCTTTATGGTAATGAATATTTGGGGTGATTAGAATCCTGTATTTGTTGTATTGAAATACTGCAAGAAGTGTAGGTCGGCATTTTTCCTTTTTGTGATTCGGCATTCATGTATTGTGTATTACAGGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAGTATGCCATCAAGGTGTAGGCTTTAGAGGGAATTGATTTATCGTCCGTGGTATCATGCATCTTTTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTCTGAACTTTGAAGTCTTTCATTTTCCATGTAATACTTCAGTTTTCCAAGTTATAATGAAATGGTTTTTTGGTTAATGACCTTAGGCGGTGCAATCTTTTGCCAAGATGAATGTGCTCTGATCTTAAACCGCGTGTGTGATTTGTCTGGATTGAGATTTTTATGTATCAAGCTGTAAATTTGCAGTTCTCTTCTACCTTTGCTAAAATTTTGACAAGTAGGATCAAGCGATGAACTCATTACAGCTGAAGAACTCAATCCAGATACCTTGGATTTGGACGATCAGATTGATTTGAATGAACAAATTTCTTTATAAATGCGTTAATCATCAAGTATTCGGATGAATTTCTGTTGTG

mRNA sequence

ATGAAGGGATGGGCCGAAAATTTAAAGCCCATTCCATATCAAATGCTCTTTAGTGGGCCCATCGGTAAAAGCCCAATCCAAATCGGGAAACAGCCCATCGAATTGAAAATGAAGGAAATTACGGGCGTCTTAAATAGACCTCCGCCGAATCCCAAATCACAACAGACGGTCTCTGCTTACCAGATTTTAATGGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAGTATGCCATCAAGGTGTAGGCTTTAGAGGGAATTGATTTATCGTCCGTGGTATCATGCATCTTTTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTCTGAACTTTGAAGTCTTTCATTTTCCATGTAATACTTCAGTTTTCCAAGTTATAATGAAATGGTTTTTTGGTTAATGACCTTAGGCGGTGCAATCTTTTGCCAAGATGAATGTGCTCTGATCTTAAACCGCGTGTGTGATTTGTCTGGATTGAGATTTTTATGTATCAAGCTGTAAATTTGCAGTTCTCTTCTACCTTTGCTAAAATTTTGACAAGTAGGATCAAGCGATGAACTCATTACAGCTGAAGAACTCAATCCAGATACCTTGGATTTGGACGATCAGATTGATTTGAATGAACAAATTTCTTTATAAATGCGTTAATCATCAAGTATTCGGATGAATTTCTGTTGTG

Coding sequence (CDS)

ATGAAGGGATGGGCCGAAAATTTAAAGCCCATTCCATATCAAATGCTCTTTAGTGGGCCCATCGGTAAAAGCCCAATCCAAATCGGGAAACAGCCCATCGAATTGAAAATGAAGGAAATTACGGGCGTCTTAAATAGACCTCCGCCGAATCCCAAATCACAACAGACGGTCTCTGCTTACCAGATTTTAATGGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAGTATGCCATCAAGGTGTAG

Protein sequence

MKGWAENLKPIPYQMLFSGPIGKSPIQIGKQPIELKMKEITGVLNRPPPNPKSQQTVSAYQILMARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYAIKV

Homology

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BLAST of CaUC02G038850 vs. NCBI nr
Match: KAG6601021.1 (Spliceosome-associated protein 130 B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-61
Identity = 136/154 (88.31%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 33   IELKMKEITGVLNRPPPNPKSQQTVSAYQILMARIKVHELRQKSKGDLLTQLKDLKAELA 92
            ++L + ++T  L +PPPNPK+ Q VSAYQILMARIKVHELRQKSK DLLTQLKDLKAEL+
Sbjct: 1206 LQLALDKLT--LMKPPPNPKTPQPVSAYQILMARIKVHELRQKSKADLLTQLKDLKAELS 1265

Query: 93   LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTR 152
            LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTR
Sbjct: 1266 LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTR 1325

Query: 153  AIRRRLTKHQASLKTERQKKKEMYYPLRKYAIKV 187
            AIRRRLTKHQASLKTER+KKKEMYYPLRKYAIKV
Sbjct: 1326 AIRRRLTKHQASLKTEREKKKEMYYPLRKYAIKV 1357

[Close]

BLAST of CaUC02G038850 vs. NCBI nr
Match: KAG7031634.1 (60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 8.9e-61
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 46  RPPPNPKSQQTVSAYQILMARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPN 105
           RPPPNPK+ Q VSAYQILMARIKVHELRQKSK DLLTQLKDLKAEL+LLRVAKVTGGAPN
Sbjct: 6   RPPPNPKTPQPVSAYQILMARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPN 65

Query: 106 KLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL 165
           KLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL
Sbjct: 66  KLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL 125

Query: 166 KTERQKKKEMYYPLRKYAIKV 187
           KTER+KKKEMYYPLRKYAIKV
Sbjct: 126 KTEREKKKEMYYPLRKYAIKV 146

[Close]

BLAST of CaUC02G038850 vs. NCBI nr
Match: XP_038891782.1 (60S ribosomal protein L35-like [Benincasa hispida])

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. NCBI nr
Match: KAA0062216.1 (60S ribosomal protein L35-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 8.9e-53
Identity = 130/154 (84.42%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 37  MKEITGVLNR----PPPNPKSQQTVSAYQ-ILMARIKVHELRQKSKGDLLTQLKDLKAEL 96
           MKEI GVLNR        P+  +T +  Q    ARIKVHELRQKSKGDLL QLKDLKAEL
Sbjct: 1   MKEIMGVLNRFDLPQFLQPRVLKTTAESQNSTPARIKVHELRQKSKGDLLAQLKDLKAEL 60

Query: 97  ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKT 156
           ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKT
Sbjct: 61  ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKT 120

Query: 157 RAIRRRLTKHQASLKTERQKKKEMYYPLRKYAIK 186
           RAIRRRLTKHQ SLKTERQKKKEMYYPLRKYAIK
Sbjct: 121 RAIRRRLTKHQESLKTERQKKKEMYYPLRKYAIK 154

[Close]

BLAST of CaUC02G038850 vs. NCBI nr
Match: XP_004150961.1 (60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa_000675 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.6e-51
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQK+K +LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-50
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR KSK DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL
Match: A0A5A7V711 (60S ribosomal protein L35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00120 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.3e-53
Identity = 130/154 (84.42%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 37  MKEITGVLNR----PPPNPKSQQTVSAYQ-ILMARIKVHELRQKSKGDLLTQLKDLKAEL 96
           MKEI GVLNR        P+  +T +  Q    ARIKVHELRQKSKGDLL QLKDLKAEL
Sbjct: 1   MKEIMGVLNRFDLPQFLQPRVLKTTAESQNSTPARIKVHELRQKSKGDLLAQLKDLKAEL 60

Query: 97  ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKT 156
           ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK+ALREAYKKKKLLPLDLRPKKT
Sbjct: 61  ALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKT 120

Query: 157 RAIRRRLTKHQASLKTERQKKKEMYYPLRKYAIK 186
           RAIRRRLTKHQ SLKTERQKKKEMYYPLRKYAIK
Sbjct: 121 RAIRRRLTKHQESLKTERQKKKEMYYPLRKYAIK 154

[Close]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL
Match: A0A0A0KLK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.4e-53
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSK DLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL
Match: A0A1S3CF13 (60S ribosomal protein L35-like OS=Cucumis melo OX=3656 GN=LOC103500179 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL
Match: A0A6J1JVN4 (60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.8e-52
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELRQKSK DLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.2e-51
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR KSK DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of CaUC02G038850 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 5.2e-51
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 64  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 123
           MARIKVHELR KSK DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 124 ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 183
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 184 IKV 187
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of CaUC02G038850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601021.1	4.0e-61	88.31	Spliceosome-associated protein 130 B, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7031634.1	8.9e-61	95.04	60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038891782.1	1.8e-53	100.00	60S ribosomal protein L35-like [Benincasa hispida]	[more]
KAA0062216.1	8.9e-53	84.42	60S ribosomal protein L35-like [Cucumis melo var. makuwa]	[more]
XP_004150961.1	1.5e-52	98.37	60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa...	[more]

BLAST of CaUC02G038850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	6.6e-51	91.06	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
Q9SF53	1.5e-50	91.06	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
O80626	1.5e-50	91.06	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9LZ41	3.3e-50	91.06	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	7.3e-50	90.24	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of CaUC02G038850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V711	4.3e-53	84.42	60S ribosomal protein L35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KLK6	7.4e-53	98.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1	[more]
A0A6J1BZV3	2.8e-52	97.56	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]
A0A1S3CF13	2.8e-52	97.56	60S ribosomal protein L35-like OS=Cucumis melo OX=3656 GN=LOC103500179 PE=3 SV=1	[more]
A0A6J1JVN4	4.8e-52	96.75	60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1	[more]

BLAST of CaUC02G038850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	1.1e-51	91.06	Ribosomal L29 family protein	[more]
AT3G09500.1	1.1e-51	91.06	Ribosomal L29 family protein	[more]
AT5G02610.1	2.3e-51	91.06	Ribosomal L29 family protein	[more]
AT3G55170.1	5.2e-51	90.24	Ribosomal L29 family protein	[more]
AT3G55170.2	5.2e-51	90.24	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 71..127 e-value: 8.8E-17 score: 60.8
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 71..127 e-value: 5.8E-18 score: 62.6
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 67..127 score: 12.747765
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 64..140 e-value: 1.1E-34 score: 120.6
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 67..128
None	No IPR available	GENE3D	6.10.250.3450		coord: 141..186 e-value: 8.4E-22 score: 79.1
None	No IPR available	PANTHER	PTHR45722:SF8	60S RIBOSOMAL PROTEIN L35-4	coord: 56..186
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 71..127 e-value: 3.90672E-13 score: 59.4235
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 56..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G038850.1	CaUC02G038850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome