CaUC02G035540 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G035540
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDUF4228 domain protein
LocationCiama_Chr02: 15406966 .. 15407406 (-)
RNA-Seq ExpressionCaUC02G035540
SyntenyCaUC02G035540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATAATTGCTTCAAAAGCAACAAAGTGATGGCGCAAGACGAGCCTGATGATCTTTTGCCTCCTACCGAAGTTAAGAAAGTTGAGGAAAAACCGCCGGCTGGATCGGCAATGGCGAAGCCGAAGACGGCAGAGGCGAGAGCCGGTGGTGCGAGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGAGGAGAAAAATTCCGGCGGAAGTGGCAGCGATGCTGGAGTACTGAGGATTAAAGTGGTGATGTCTCAGAAAGAGTTGAAACAGATGTTGACGGATAGAGAGAACAATTCGTGTACATTGGAGGAATTGATTGCTGAATTGAAGGTGAGAGGCAGAACGACGATTTCAGATGCGAGAATCGATGAAGTTGAAGATGAAAATGGAAGCTGGAAGCCGGATCTGGAATCTATTCCTGAAGGTCTCCATTAA

mRNA sequence

ATGGGGAATAATTGCTTCAAAAGCAACAAAGTGATGGCGCAAGACGAGCCTGATGATCTTTTGCCTCCTACCGAAGTTAAGAAAGTTGAGGAAAAACCGCCGGCTGGATCGGCAATGGCGAAGCCGAAGACGGCAGAGGCGAGAGCCGGTGGTGCGAGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGAGGAGAAAAATTCCGGCGGAAGTGGCAGCGATGCTGGAGTACTGAGGATTAAAGTGGTGATGTCTCAGAAAGAGTTGAAACAGATGTTGACGGATAGAGAGAACAATTCGTGTACATTGGAGGAATTGATTGCTGAATTGAAGGTGAGAGGCAGAACGACGATTTCAGATGCGAGAATCGATGAAGTTGAAGATGAAAATGGAAGCTGGAAGCCGGATCTGGAATCTATTCCTGAAGGTCTCCATTAA

Coding sequence (CDS)

ATGGGGAATAATTGCTTCAAAAGCAACAAAGTGATGGCGCAAGACGAGCCTGATGATCTTTTGCCTCCTACCGAAGTTAAGAAAGTTGAGGAAAAACCGCCGGCTGGATCGGCAATGGCGAAGCCGAAGACGGCAGAGGCGAGAGCCGGTGGTGCGAGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGAGGAGAAAAATTCCGGCGGAAGTGGCAGCGATGCTGGAGTACTGAGGATTAAAGTGGTGATGTCTCAGAAAGAGTTGAAACAGATGTTGACGGATAGAGAGAACAATTCGTGTACATTGGAGGAATTGATTGCTGAATTGAAGGTGAGAGGCAGAACGACGATTTCAGATGCGAGAATCGATGAAGTTGAAGATGAAAATGGAAGCTGGAAGCCGGATCTGGAATCTATTCCTGAAGGTCTCCATTAA

Protein sequence

MGNNCFKSNKVMAQDEPDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVRFKLQEEEEKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVRGRTTISDARIDEVEDENGSWKPDLESIPEGLH
Homology
BLAST of CaUC02G035540 vs. NCBI nr
Match: XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 5.0e-59
Identity = 126/144 (87.50%), Postives = 128/144 (88.89%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVRFK 60
           MGNNCFKSNKVMAQDEP+DLLPP E KKVEEKP  GSAMAKPKTAEAR GGASKKVVRFK
Sbjct: 1   MGNNCFKSNKVMAQDEPEDLLPPIEAKKVEEKPRPGSAMAKPKTAEARTGGASKKVVRFK 60

Query: 61  LQEEEEKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVRGRTTIS 120
           LQEEEEKNSG    D GVLRIKVVMSQKELKQML DRENNSCTLEELI ELKV+GRTTIS
Sbjct: 61  LQEEEEKNSG----DGGVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVKGRTTIS 120

Query: 121 DARIDEVEDENGSWKPDLESIPEG 145
           D RID VEDENG WKPDLE IPEG
Sbjct: 121 DGRIDAVEDENGRWKPDLEGIPEG 140

BLAST of CaUC02G035540 vs. NCBI nr
Match: KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 8.3e-46
Identity = 114/153 (74.51%), Postives = 126/153 (82.35%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLL---PPTEVKKVEEKPPAGSAMAKPKTAEARAGGAS-KKV 60
           MGN+CFKSNKVMAQDE    L   PP E KKVEEKP AGSAMAKPKTAE R+G A+ KKV
Sbjct: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60

Query: 61  VRFKLQEEEEKNSGGSGSD---AGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKV 120
           VRFKLQEE+E NSGGSG D   AGVLRIKVVMSQ+ELKQ+L + EN+S +LEELIAE KV
Sbjct: 61  VRFKLQEEDE-NSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKV 120

Query: 121 RGRTTISDARIDEVEDENGSWKPDLESIPEGLH 147
           +GRTT+SDA  DEVEDENGS +P LE IPEGLH
Sbjct: 121 KGRTTVSDAITDEVEDENGSRRPALECIPEGLH 152

BLAST of CaUC02G035540 vs. NCBI nr
Match: XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 5.0e-35
Identity = 95/148 (64.19%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 4   NCFKSNKVMAQDE-----PDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVR 63
           NC ++N+VMAQDE     P+  L  T   KVE+KP AGSA+A+PKT EAR     KKVVR
Sbjct: 45  NCLRNNRVMAQDEACSPSPNSSLTETNY-KVEDKPAAGSALARPKTEEARIAARRKKVVR 104

Query: 64  FKLQEEEEKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVRGRTT 123
           F  Q+ E++ SGG G   GVLRIKVV+SQKELKQ+L DRE+NS TLEEL+AELK++GR T
Sbjct: 105 F--QQREDEISGGGG---GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMKGR-T 164

Query: 124 ISDARIDEVEDENGSWKPDLESIPEGLH 147
           ISDAR D  EDENGSW+P LESIPE LH
Sbjct: 165 ISDARADNEEDENGSWRPALESIPEDLH 185

BLAST of CaUC02G035540 vs. NCBI nr
Match: KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 96/151 (63.58%), Postives = 106/151 (70.20%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLLPP---TEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVV 60
           MGN CFKSNKVMAQD+  D  PP    E KKV+++P  GSAMAKPK      G A KKVV
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPK--NGTGGAAGKKVV 60

Query: 61  RFKLQEEEE----KNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKV 120
           RF LQEEE+    +NSG SG   GVLRIKVV+SQKELKQ+L  RENNSC+LEELI ELKV
Sbjct: 61  RFNLQEEEKDEEGRNSGDSG--PGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKV 120

Query: 121 RGRTTISDARIDEVEDENGSWKPDLESIPEG 145
           +GR T   A      DE GSWKP LE IPEG
Sbjct: 121 KGRATTVSA------DETGSWKPALECIPEG 141

BLAST of CaUC02G035540 vs. NCBI nr
Match: TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 94/151 (62.25%), Postives = 106/151 (70.20%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLLPP---TEVKKVEEKP-PAGSAMAKPKTAEARAGGASKKV 60
           MGN CF++NKVMAQD+  D LPP    E +KVEE+P   GSAMAKPK      G A KKV
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPK--NGTGGAAGKKV 60

Query: 61  VRFKLQEEE---EKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKV 120
           VRF LQEEE   E  + G  S AGVLRIKVV+SQKELK++L +RENNSC+LEELI ELKV
Sbjct: 61  VRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIEELKV 120

Query: 121 RGRTTISDARIDEVEDENGSWKPDLESIPEG 145
           +GR T        V DE GSWKP LE IPEG
Sbjct: 121 KGRAT-------TVSDEIGSWKPALECIPEG 142

BLAST of CaUC02G035540 vs. ExPASy TrEMBL
Match: A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.4e-35
Identity = 95/148 (64.19%), Postives = 112/148 (75.68%), Query Frame = 0

Query: 4   NCFKSNKVMAQDE-----PDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVR 63
           NC ++N+VMAQDE     P+  L  T   KVE+KP AGSA+A+PKT EAR     KKVVR
Sbjct: 45  NCLRNNRVMAQDEACSPSPNSSLTETNY-KVEDKPAAGSALARPKTEEARIAARRKKVVR 104

Query: 64  FKLQEEEEKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVRGRTT 123
           F  Q+ E++ SGG G   GVLRIKVV+SQKELKQ+L DRE+NS TLEEL+AELK++GR T
Sbjct: 105 F--QQREDEISGGGG---GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMKGR-T 164

Query: 124 ISDARIDEVEDENGSWKPDLESIPEGLH 147
           ISDAR D  EDENGSW+P LESIPE LH
Sbjct: 165 ISDARADNEEDENGSWRPALESIPEDLH 185

BLAST of CaUC02G035540 vs. ExPASy TrEMBL
Match: A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.8e-34
Identity = 96/151 (63.58%), Postives = 106/151 (70.20%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLLPP---TEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVV 60
           MGN CFKSNKVMAQD+  D  PP    E KKV+++P  GSAMAKPK      G A KKVV
Sbjct: 1   MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPK--NGTGGAAGKKVV 60

Query: 61  RFKLQEEEE----KNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKV 120
           RF LQEEE+    +NSG SG   GVLRIKVV+SQKELKQ+L  RENNSC+LEELI ELKV
Sbjct: 61  RFNLQEEEKDEEGRNSGDSG--PGVLRIKVVISQKELKQILKSRENNSCSLEELIEELKV 120

Query: 121 RGRTTISDARIDEVEDENGSWKPDLESIPEG 145
           +GR T   A      DE GSWKP LE IPEG
Sbjct: 121 KGRATTVSA------DETGSWKPALECIPEG 141

BLAST of CaUC02G035540 vs. ExPASy TrEMBL
Match: A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 94/151 (62.25%), Postives = 106/151 (70.20%), Query Frame = 0

Query: 1   MGNNCFKSNKVMAQDEPDDLLPP---TEVKKVEEKP-PAGSAMAKPKTAEARAGGASKKV 60
           MGN CF++NKVMAQD+  D LPP    E +KVEE+P   GSAMAKPK      G A KKV
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPK--NGTGGAAGKKV 60

Query: 61  VRFKLQEEE---EKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKV 120
           VRF LQEEE   E  + G  S AGVLRIKVV+SQKELK++L +RENNSC+LEELI ELKV
Sbjct: 61  VRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIEELKV 120

Query: 121 RGRTTISDARIDEVEDENGSWKPDLESIPEG 145
           +GR T        V DE GSWKP LE IPEG
Sbjct: 121 KGRAT-------TVSDEIGSWKPALECIPEG 142

BLAST of CaUC02G035540 vs. ExPASy TrEMBL
Match: A0A6J1B1M6 (uncharacterized protein LOC110423293 OS=Herrania umbratica OX=108875 GN=LOC110423293 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 57/143 (39.86%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 4   NCFKSNKVMAQ-DEPDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVRFKLQ 63
           NC  SNK++AQ D+P+      EV +   K  A         A+       KK+VRFKL 
Sbjct: 3   NCLTSNKIVAQNDQPEPQGCRAEVIEETGKVTASKLERAEVAADEGEKVKKKKMVRFKLN 62

Query: 64  EEEEKNSGGSG-SDAGVLRIKVVMSQKELKQMLTDREN-NSCTLEELIAELKVRGRTTIS 123
           EE + + G  G S  GV+RI++V++QKELKQ+L+ RE+    +LE LI  +K+RG     
Sbjct: 63  EENDVDGGRQGESKDGVVRIRLVVTQKELKQILSSREDLKHTSLEGLIRVMKLRGVRISE 122

Query: 124 DARIDEVEDENGSWKPDLESIPE 144
             R ++ +  +G W+P LESIPE
Sbjct: 123 GGRTNDDDGFHGGWRPALESIPE 145

BLAST of CaUC02G035540 vs. ExPASy TrEMBL
Match: A0A4V3WQ11 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029836 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 56/149 (37.58%), Postives = 83/149 (55.70%), Query Frame = 0

Query: 4   NCFKSNKVMAQDEPDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVRFKL-- 63
           NC  SNK++ QDE D+   P E + +E              +     G  KK VRFKL  
Sbjct: 3   NCVTSNKILGQDEKDE--QPREERAIER-------------SVRHVDGGKKKSVRFKLHE 62

Query: 64  -QEEEEKNSGGSG------SDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVR 123
            +EEEE+   G+G      S  G +RI+VV++Q+EL ++L  +   S ++E+++ E+K++
Sbjct: 63  EEEEEEEEEDGNGEERQGCSKGGAVRIRVVVTQRELIRILNTKSKYS-SVEQMLGEMKLK 122

Query: 124 GRTTISDARIDEVEDENGSWKPDLESIPE 144
            R  IS  R  + E  NGSW+P LESIPE
Sbjct: 123 SR-KISQIRSSDDEGTNGSWRPALESIPE 134

BLAST of CaUC02G035540 vs. TAIR 10
Match: AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 50/142 (35.21%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 4   NCFKSNKVMAQDEPDDLLPPTEVKKVEEKPPAGSAMAKPKTAEARAGGASKKVVRFKLQE 63
           NC + +  +A+ E DDL P   VK +EE           KT+             F+ +E
Sbjct: 3   NCLRHDNGVARKEKDDLDPEPLVKLLEE----------GKTS-------------FRGEE 62

Query: 64  EEEKNSGGSGSDAGVLRIKVVMSQKELKQMLTDRENNSCTLEELIAELKVRGRTTISDAR 123
           E E++   +  ++ V+RIKVV+++KEL+Q+L   +N   ++++L+  LK  GR  IS A 
Sbjct: 63  ESERS---TEEESKVVRIKVVVTKKELRQIL-GHKNGINSIQQLVHVLKDSGR-NISMAS 116

Query: 124 IDEVEDENG--SWKPDLESIPE 144
            +E E E G  +W+P LESIPE
Sbjct: 123 YEEDEKEEGDENWRPTLESIPE 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902397.15.0e-5987.50uncharacterized protein LOC120089037 [Benincasa hispida][more]
KAG6570883.18.3e-4674.51hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022140639.15.0e-3564.19uncharacterized protein LOC111011249 [Momordica charantia][more]
KGN63254.11.6e-3363.58hypothetical protein Csa_022493 [Cucumis sativus][more]
TYK24218.11.8e-3262.25hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CG852.4e-3564.19uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0LQE97.8e-3463.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1[more]
A0A5D3DKZ88.7e-3362.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1B1M61.9e-1139.86uncharacterized protein LOC110423293 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A4V3WQ112.5e-1137.58Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0298... [more]
Match NameE-valueIdentityDescription
AT3G21680.11.1e-0835.21unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availablePANTHERPTHR33148:SF55OS01G0219300 PROTEINcoord: 1..144
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G035540.1CaUC02G035540.1mRNA