CaUC02G033740 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G033740
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGlyco_18 domain-containing protein
LocationCiama_Chr02: 9935968 .. 9937105 (-)
RNA-Seq ExpressionCaUC02G033740
SyntenyCaUC02G033740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGCGGCAGTATCAAGACACGTCAGTTGCAGATCGGGCTATGTATGTGGACTAGCCAGAGGATGATAGAGTTCCTAGCCCGAGTCTCACTGATTCAGACTCTAGTGACGATATGTGGGGATCATGCGGATGATCCTAGGCATGAACATCCATCCACCGTTGCCCAAGAGACGCATGACGATGACGACGAGGAGTGCCCTGTCACTCTAGACAATCATGAGGAGCACCTTGTTGACCCTCCAGTTGTATCTAAGAGGAGGAAGGTTGAGAGTGGTGGGCATGGCCACACTTTACTCGATGAGCGGGTTGAAAGAGTGGAGGCGAATGTGGATGAGCTACGGTCTGACCTACATGAGGTCAAATCTCAGTTGCAGACCATCACAGCGCTCTTGAGATCACTATGTCCGATATGAATTTAAATAATAGTCAAAGTTTTAATTTATTTATTTTTATTAATTTTAAAGTAATTATTATGATATTTGAACTCATGTAGGAATTTTTTGACACCCATCCCGAGACCACCACCACCACTAACCATCCCGATACACCCACTGAGCCAGAGATCCCCACCACCATCTCCCATCTAGAGCCACCACCACCACCACTCATCTCGATACACGCACTGAGCCAGAGATCCCCACCACCATCACCCATCTCGAGACCACCACCACCACCCATCACAATACCACCACCAACCCCAATCCCACCACCCATCTTGAGCCTGAGACCACCACTACCACCCACCATCTTGAGACCACCACCATCGACCTTGAGTCTGAAACCAGAACTACCACCCATCATCTTGAGACCACGATTATCGACCTTGAGCCCGAGACCACCGCCAACCCCCATCCCGAGACCATCACCCAGTTTGATCCCACCACCTATCTCGATCCACCTACCATCACCACCACCATCACTAATCTCATTACCATGGATGTTGACCCCACCACAGATCCCAAGTTGGCCACTACCTCCATCGAGCCTACCCTAGTGGCCATTCTCGATCCTTCCACTGCCATCGAGATATTATTTGATAATGAGGAATGTGATGTAGAGGTTCTTCACATTCCTCCACCGAAAGCGAAGTTGAGGATAAAGTCAAAGATGCCAGCAAAACAAGAGGCACCTTAA

mRNA sequence

ATGCAGAGCGGCAGTATCAAGACACGTCAGTTGCAGATCGGGCTATGTATGTGGACTAGCCAGAGGATGATAGAGTTCCTAGCCCGAGTCTCACTGATTCAGACTCTAGTGACGATATGTGGGGATCATGCGGATGATCCTAGGCATGAACATCCATCCACCGTTGCCCAAGAGACGCATGACGATGACGACGAGGAGTGCCCTGTCACTCTAGACAATCATGAGGAGCACCTTGTTGACCCTCCAGTTGTATCTAAGAGGAGGAAGGTTGAGAGTGGTGGGCATGGCCACACTTTACTCGATGAGCGGGTTGAAAGAGTGGAGGCGAATGTGGATGAGCTACGAGATCCCCACCACCATCTCCCATCTAGAGCCACCACCACCACCACTCATCTCGATACACGCACTGAGCCAGAGATCCCCACCACCATCACCCATCTCGAGACCACCACCACCACCCATCACAATACCACCACCAACCCCAATCCCACCACCCATCTTGAGCCTGAGACCACCACTACCACCCACCATCTTGAGACCACCACCATCGACCTTGAGTCTGAAACCAGAACTACCACCCATCATCTTGAGACCACGATTATCGACCTTGAGCCCGAGACCACCGCCAACCCCCATCCCGAGACCATCACCCAGTTTGATCCCACCACCTATCTCGATCCACCTACCATCACCACCACCATCACTAATCTCATTACCATGGATGTTGACCCCACCACAGATCCCAAGTTGGCCACTACCTCCATCGAGCCTACCCTAGTGGCCATTCTCGATCCTTCCACTGCCATCGAGATATTATTTGATAATGAGGAATGTGATGTAGAGGTTCTTCACATTCCTCCACCGAAAGCGAAGTTGAGGATAAAGTCAAAGATGCCAGCAAAACAAGAGGCACCTTAA

Coding sequence (CDS)

ATGCAGAGCGGCAGTATCAAGACACGTCAGTTGCAGATCGGGCTATGTATGTGGACTAGCCAGAGGATGATAGAGTTCCTAGCCCGAGTCTCACTGATTCAGACTCTAGTGACGATATGTGGGGATCATGCGGATGATCCTAGGCATGAACATCCATCCACCGTTGCCCAAGAGACGCATGACGATGACGACGAGGAGTGCCCTGTCACTCTAGACAATCATGAGGAGCACCTTGTTGACCCTCCAGTTGTATCTAAGAGGAGGAAGGTTGAGAGTGGTGGGCATGGCCACACTTTACTCGATGAGCGGGTTGAAAGAGTGGAGGCGAATGTGGATGAGCTACGAGATCCCCACCACCATCTCCCATCTAGAGCCACCACCACCACCACTCATCTCGATACACGCACTGAGCCAGAGATCCCCACCACCATCACCCATCTCGAGACCACCACCACCACCCATCACAATACCACCACCAACCCCAATCCCACCACCCATCTTGAGCCTGAGACCACCACTACCACCCACCATCTTGAGACCACCACCATCGACCTTGAGTCTGAAACCAGAACTACCACCCATCATCTTGAGACCACGATTATCGACCTTGAGCCCGAGACCACCGCCAACCCCCATCCCGAGACCATCACCCAGTTTGATCCCACCACCTATCTCGATCCACCTACCATCACCACCACCATCACTAATCTCATTACCATGGATGTTGACCCCACCACAGATCCCAAGTTGGCCACTACCTCCATCGAGCCTACCCTAGTGGCCATTCTCGATCCTTCCACTGCCATCGAGATATTATTTGATAATGAGGAATGTGATGTAGAGGTTCTTCACATTCCTCCACCGAAAGCGAAGTTGAGGATAAAGTCAAAGATGCCAGCAAAACAAGAGGCACCTTAA

Protein sequence

MQSGSIKTRQLQIGLCMWTSQRMIEFLARVSLIQTLVTICGDHADDPRHEHPSTVAQETHDDDDEECPVTLDNHEEHLVDPPVVSKRRKVESGGHGHTLLDERVERVEANVDELRDPHHHLPSRATTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHLEPETTTTTHHLETTTIDLESETRTTTHHLETTIIDLEPETTANPHPETITQFDPTTYLDPPTITTTITNLITMDVDPTTDPKLATTSIEPTLVAILDPSTAIEILFDNEECDVEVLHIPPPKAKLRIKSKMPAKQEAP
Homology
BLAST of CaUC02G033740 vs. NCBI nr
Match: XP_030586919.1 (LOW QUALITY PROTEIN: mucin-2-like [Archocentrus centrarchus])

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-06
Identity = 64/149 (42.95%), Postives = 67/149 (44.97%), Query Frame = 0

Query: 122  PSRATTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHLEPETTTTTHHLETT 181
            P   TTTT H  T T P   TT  H  TTTT H  TTT P P+T   P TTTTT    TT
Sbjct: 2667 PHTTTTTTPHPTTTTPPSSTTTTPHTTTTTTPHTYTTTTPPPSTTTTPPTTTTTTPHPTT 2726

Query: 182  TIDLESETRTTTHHLETTIIDLEPETTANPHPETITQFDPTTYLDPPTITTTITNLITMD 241
            T      T TTT H  TT     P TT  PHP T T     T   PPT TTT  +  T  
Sbjct: 2727 TTTTPHPTTTTTPHTTTTTTP-PPTTTTTPHPTTTTTPHTYTTTTPPTTTTTTPHTTTTT 2786

Query: 242  VDP---TTDPKLATTSIEPTLVAILDPST 268
              P   TT P   TT+   T      P T
Sbjct: 2787 TPPSTTTTTPHPTTTTTPHTTTTTTPPPT 2814

BLAST of CaUC02G033740 vs. NCBI nr
Match: XP_033739191.1 (integumentary mucin C.1-like [Pecten maximus])

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-05
Identity = 65/137 (47.45%), Postives = 70/137 (51.09%), Query Frame = 0

Query: 122 PSRATTTTTHLDTRTEPEIPTTITHLETTTTT--HHNTTTNPNPTTHLEPETTTTTHHLE 181
           P   TTT     T T+PE  TT T  ETTTTT     TTT P  TT  +PETTTTT   E
Sbjct: 55  PETTTTTQPETTTTTQPETTTTTTQPETTTTTQPETTTTTQPETTTTTQPETTTTTTQPE 114

Query: 182 TTTIDLESETRTTTHHLETTIIDLEPETTANPHPETITQFDP--TTYLDPPTITTTITNL 241
           TTT   + ET TTT   ETT    EPETT    PET T   P  TT   P T TTT    
Sbjct: 115 TTT-TTQPETTTTTTQPETT-TTTEPETTTTTQPETTTTTQPETTTTTQPETTTTTQPET 174

Query: 242 ITMDVDPTTDPKLATTS 255
            T     TT P+  TT+
Sbjct: 175 TT-----TTQPETTTTT 184

BLAST of CaUC02G033740 vs. NCBI nr
Match: XP_028324733.1 (mucin-2-like [Gouania willdenowi])

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-05
Identity = 65/159 (40.88%), Postives = 73/159 (45.91%), Query Frame = 0

Query: 122 PSRATTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHL---------EPETT 181
           P+  TTTTT   T TEP   TT     TTTTT   T+T   PTT           EP TT
Sbjct: 361 PTPTTTTTTTEPTTTEPTTTTTTEPTTTTTTTEPTTSTTTEPTTSTTTEPTTTTPEPTTT 420

Query: 182 TTTHHLETTTIDLESETRTTT-HHLETTIIDLEPETTANPHPETITQFDPTTYLDPPTIT 241
           TTT    TTT   E  T TTT     TT    EP T+    P T T  +PTT    PT T
Sbjct: 421 TTTPEPTTTTTTTEPTTTTTTIEPTTTTTTTTEPTTSTTTEPTTSTTTEPTTTTPEPTTT 480

Query: 242 TTI---TNLITMDVDPTTDPKLATTSIEPTLVAILDPST 268
           TT    T   T     TT+P   TT+ EPT     +P+T
Sbjct: 481 TTTTEPTTTTTTTETTTTEPTTTTTTTEPTTSTTTEPTT 519

BLAST of CaUC02G033740 vs. NCBI nr
Match: XP_037040434.1 (integumentary mucin C.1-like [Bradysia coprophila])

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-05
Identity = 65/143 (45.45%), Postives = 70/143 (48.95%), Query Frame = 0

Query: 126 TTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHLEPETTTTTHHLETTTIDL 185
           TTT T   T T    PTT T   TTTT    TTT P PTT   PETTTTT    TTT   
Sbjct: 108 TTTPTTTTTPTTTTTPTTTTTPTTTTTPEPTTTTTPEPTTTTTPETTTTTTPEPTTTTTP 167

Query: 186 ESETRTTTHHLETTIIDLEPETTANPHPETITQFDPTTYLDP-PTITTTITNLITMDVDP 245
           E  T TT     TT    EP TT  P P T T  +PTT   P PT TTT     T   +P
Sbjct: 168 EPTTTTTPE--PTTTTTPEPTTTTTPEPTTTTTPEPTTTTTPEPTTTTTPEPTTTTTPEP 227

Query: 246 TTDPKLATTSIEPTLVAILDPST 268
           TT     TT+ EPT     +P+T
Sbjct: 228 TT-----TTTPEPTTTTTPEPTT 243

BLAST of CaUC02G033740 vs. NCBI nr
Match: XP_031756615.1 (mucin-5AC [Xenopus tropicalis])

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-04
Identity = 61/145 (42.07%), Postives = 70/145 (48.28%), Query Frame = 0

Query: 123  SRATTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHLEPETTTTTHHLETTT 182
            S  TTTTT   T T     TT +H  TTTT+H  TTT  +PTT  +P TTTT+H   TTT
Sbjct: 3438 SHPTTTTTSHPTTTSQPTTTTTSHPTTTTTSHPTTTTTSHPTTTSQPTTTTTSH--PTTT 3497

Query: 183  IDLESETRTTTHHLETTIIDLEPETTANPHPETITQFDPTTYLDPPTITTTITNLITMDV 242
                  T TTT H  TT     P TT   HP T T   PTT   P T TT+     T   
Sbjct: 3498 ---SQPTTTTTSH-PTTTTTSHPTTTTTSHPTTTTTSHPTTTSQPTTTTTSHPTTTTTSH 3557

Query: 243  DPTTDPKLATTSIEPTLVAILDPST 268
              TT     TT+ +PT      P+T
Sbjct: 3558 PTTTTTSHPTTTSQPTTTTTSHPTT 3576

BLAST of CaUC02G033740 vs. ExPASy TrEMBL
Match: A0A4Y0BQH6 (Glyco_18 domain-containing protein OS=Anopheles funestus OX=62324 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 62/150 (41.33%), Postives = 66/150 (44.00%), Query Frame = 0

Query: 122 PSRATTTTTHLDTRTEPEIPTTITHLETTTTTHHNTTTNPNPTTHLEPETTTTTHHLETT 181
           P+  TTT T   T T P   TT T   TTTTT   TTT P  TT   P TTTTT    TT
Sbjct: 510 PTTTTTTPTTTTTTTTPTTTTTTTPTTTTTTTPTTTTTTPTTTTTTTPTTTTTTDTTTTT 569

Query: 182 TIDLESETRTTTHHLETTIIDLEPETTANPHPETITQFDPTTYLDPPTITTT----ITNL 241
           T    + T TTT    TT     P TT    P T T   PTT    PT TTT     T  
Sbjct: 570 TTTTPTTTTTTTPTTTTT----TPTTTTTTTPTTTTTTTPTTTTTTPTTTTTTTTPTTTT 629

Query: 242 ITMDVDPTTDPKLATTSIEPTLVAILDPST 268
            T     TT P   TT+  PT      P+T
Sbjct: 630 TTTPTTTTTTPTTTTTTTTPTTTTTTTPTT 655

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030586919.13.5e-0642.95LOW QUALITY PROTEIN: mucin-2-like [Archocentrus centrarchus][more]
XP_033739191.18.7e-0547.45integumentary mucin C.1-like [Pecten maximus][more]
XP_028324733.18.7e-0540.88mucin-2-like [Gouania willdenowi][more]
XP_037040434.18.7e-0545.45integumentary mucin C.1-like [Bradysia coprophila][more]
XP_031756615.11.5e-0442.07mucin-5AC [Xenopus tropicalis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Y0BQH62.7e-0441.33Glyco_18 domain-containing protein OS=Anopheles funestus OX=62324 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G033740.1CaUC02G033740.1mRNA